Wall clock time and date at job start Mon Mar 30 2020 05:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46979 * 2 1 4 4 H 1.08999 * 109.47137 * 304.99410 * 3 2 1 5 5 C 1.50699 * 109.47156 * 184.99897 * 3 2 1 6 6 H 1.07999 * 120.00581 * 240.00280 * 5 3 2 7 7 C 1.37884 * 119.99748 * 59.99776 * 5 3 2 8 8 N 1.31509 * 120.00188 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99737 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47347 * 89.99877 * 9 7 5 11 11 H 1.48494 * 109.47025 * 210.00077 * 9 7 5 12 12 H 1.48501 * 109.47352 * 329.99684 * 9 7 5 13 13 N 1.46500 * 109.47373 * 64.99819 * 3 2 1 14 14 C 1.34777 * 119.99981 * 274.99560 * 13 3 2 15 15 O 1.21275 * 120.00166 * 354.57811 * 14 13 3 16 16 C 1.50705 * 119.99709 * 174.57137 * 14 13 3 17 17 C 1.52998 * 109.50398 * 293.65061 * 16 14 13 18 18 C 1.52999 * 109.46802 * 179.97438 * 17 16 14 19 19 C 1.53115 * 109.53043 * 173.55285 * 16 14 13 20 20 C 1.53115 * 109.16336 * 297.69404 * 19 16 14 21 21 C 1.53038 * 109.28083 * 302.34796 * 20 19 16 22 22 N 1.46853 * 109.52007 * 59.17595 * 21 20 19 23 23 C 1.46845 * 111.19761 * 298.25991 * 22 21 20 24 24 H 1.08996 * 109.46894 * 60.00246 * 1 2 3 25 25 H 1.08993 * 109.47187 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47123 * 300.00537 * 1 2 3 27 27 H 1.08993 * 109.47323 * 239.99661 * 2 1 3 28 28 H 1.09004 * 109.46614 * 119.99831 * 2 1 3 29 29 H 0.96998 * 120.00031 * 179.97438 * 8 7 5 30 30 H 0.96995 * 119.99841 * 95.00082 * 13 3 2 31 31 H 1.08997 * 109.47037 * 59.95885 * 17 16 14 32 32 H 1.09004 * 109.47367 * 299.96139 * 17 16 14 33 33 H 1.08998 * 109.47209 * 299.43601 * 18 17 16 34 34 H 1.08998 * 109.47304 * 59.44020 * 18 17 16 35 35 H 1.09004 * 109.46730 * 179.43763 * 18 17 16 36 36 H 1.09004 * 109.52726 * 57.60352 * 19 16 14 37 37 H 1.09001 * 109.52144 * 177.78984 * 19 16 14 38 38 H 1.09005 * 109.50449 * 182.40789 * 20 19 16 39 39 H 1.09000 * 109.53911 * 62.31124 * 20 19 16 40 40 H 1.08999 * 109.46274 * 299.16272 * 21 20 19 41 41 H 1.09000 * 109.46776 * 179.19194 * 21 20 19 42 42 H 1.00896 * 110.99911 * 62.36055 * 22 21 20 43 43 H 1.09000 * 109.46266 * 301.72616 * 23 22 21 44 44 H 1.09003 * 109.45817 * 181.75789 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8800 -1.3811 10 1 6.5539 -0.3520 -0.7597 11 1 6.3835 0.9214 -2.8164 12 1 6.5576 2.0720 -0.6890 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6645 1.3668 15 8 -0.3015 2.7196 0.4050 16 6 -0.0106 3.2299 2.6908 17 6 -0.1720 2.0940 3.7030 18 6 -0.6239 2.6690 5.0469 19 6 -1.3494 3.9516 2.5145 20 6 -1.1651 5.1234 1.5463 21 6 -0.0852 6.0622 2.0890 22 7 1.1759 5.3248 2.2391 23 6 1.0358 4.2235 3.2003 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8293 -0.0604 -2.9502 30 1 2.2719 2.1232 1.9977 31 1 0.7817 1.5815 3.8290 32 1 -0.9189 1.3877 3.3406 33 1 0.1276 3.3679 5.4143 34 1 -1.5727 3.1900 4.9187 35 1 -0.7485 1.8587 5.7653 36 1 -2.0869 3.2579 2.1106 37 1 -1.6909 4.3266 3.4793 38 1 -2.1049 5.6671 1.4498 39 1 -0.8615 4.7454 0.5701 40 1 -0.3960 6.4513 3.0586 41 1 0.0587 6.8902 1.3948 42 1 1.5054 4.9868 1.3473 43 1 0.7198 4.6212 4.1647 44 1 1.9939 3.7161 3.3132 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062861145.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:30 Heat of formation + Delta-G solvation = -61.492125 kcal Electronic energy + Delta-G solvation = -22638.396777 eV Core-core repulsion = 19589.433782 eV Total energy + Delta-G solvation = -3048.962995 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.52428 -37.44307 -35.02190 -34.32908 -32.45714 -31.33139 -30.70022 -28.94311 -26.98135 -24.69693 -23.57386 -23.02260 -21.52975 -21.25508 -19.55916 -18.80129 -16.85573 -16.01146 -15.70537 -15.30864 -14.83634 -14.67476 -14.47621 -14.24140 -13.79824 -13.39377 -12.93459 -12.64813 -12.44254 -12.31768 -12.09480 -11.99424 -11.61373 -11.55534 -11.28450 -11.23078 -11.15896 -10.99267 -10.89651 -10.79010 -10.41077 -10.27466 -10.21249 -10.10404 -9.65748 -9.04802 -8.79067 -8.50365 -8.19810 -7.79441 -6.12433 -4.21620 3.24271 3.31654 3.33843 3.36784 4.07053 4.37278 4.48567 4.74717 4.92752 4.98955 5.19106 5.22797 5.25430 5.32227 5.35307 5.57093 5.59387 5.68425 5.78031 5.88335 5.93362 6.02043 6.05366 6.09649 6.21897 6.33091 6.34867 6.36001 6.41372 6.59485 6.65306 7.00074 7.13051 7.17196 7.34344 7.45121 7.50247 7.61894 7.73024 7.89928 8.17680 8.68692 8.78993 9.15628 9.46200 10.92831 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022100 B = 0.006066 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.656623 B = 4615.133091 C = 4924.468919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.706 5.706 14 C 0.511 3.489 15 O -0.546 6.546 16 C -0.118 4.118 17 C -0.107 4.107 18 C -0.153 4.153 19 C -0.089 4.089 20 C -0.167 4.167 21 C 0.057 3.943 22 N -0.686 5.686 23 C 0.069 3.931 24 H 0.049 0.951 25 H 0.023 0.977 26 H 0.036 0.964 27 H 0.099 0.901 28 H 0.030 0.970 29 H 0.264 0.736 30 H 0.386 0.614 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.348 0.652 43 H 0.080 0.920 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.605 5.784 11.894 14.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.354 5.354 14 C 0.296 3.704 15 O -0.425 6.425 16 C -0.123 4.123 17 C -0.145 4.145 18 C -0.210 4.210 19 C -0.127 4.127 20 C -0.206 4.206 21 C -0.073 4.073 22 N -0.314 5.314 23 C -0.061 4.061 24 H 0.068 0.932 25 H 0.042 0.958 26 H 0.055 0.945 27 H 0.117 0.883 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.219 0.781 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.167 0.833 43 H 0.098 0.902 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.818 6.159 11.451 14.681 hybrid contribution 0.700 -0.856 -0.311 1.149 sum -6.119 5.303 11.140 13.771 Atomic orbital electron populations 1.21816 0.98576 0.98115 1.00947 1.21935 0.92407 1.00016 1.02257 1.18747 0.94163 0.88978 0.81199 0.93326 1.21235 0.90769 1.38901 1.06224 0.92111 1.24878 0.98528 0.94832 0.95388 1.69889 1.35105 1.37695 1.09350 0.86478 0.85001 0.78455 0.77369 1.20600 1.21113 1.19805 1.46522 1.14627 1.55796 1.18429 1.20147 0.82568 0.78578 0.89149 1.90619 1.54072 1.58193 1.39626 1.21665 0.98463 0.97290 0.94927 1.21436 1.02281 0.96590 0.94224 1.21879 1.01492 1.01012 0.96606 1.21369 0.95346 0.97114 0.98867 1.22401 0.99728 0.96956 1.01473 1.22016 0.88408 0.96104 1.00725 1.60697 1.28589 1.26709 1.15407 1.22137 0.97361 0.90304 0.96331 0.93229 0.95778 0.94533 0.88298 0.95097 0.92605 0.78111 0.91276 0.91648 0.92307 0.92433 0.92723 0.91463 0.91843 0.92145 0.89477 0.91504 0.91105 0.83327 0.90172 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.59 37.16 0.32 -2.70 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.62 2.25 -69.09 -0.16 6.47 16 4 H 0.05 1.39 7.51 -51.93 -0.39 1.00 16 5 C -0.53 -13.82 8.73 -34.44 -0.30 -14.12 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.56 11.29 55.43 0.63 -23.93 16 9 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.71 -13.96 4.90 -54.93 -0.27 -14.23 16 14 C 0.51 9.49 3.44 -10.98 -0.04 9.45 16 15 O -0.55 -12.05 11.65 5.56 0.06 -11.98 16 16 C -0.12 -1.66 0.44 -155.58 -0.07 -1.73 16 17 C -0.11 -1.33 4.96 -26.73 -0.13 -1.46 16 18 C -0.15 -1.48 9.21 37.16 0.34 -1.14 16 19 C -0.09 -1.21 4.13 -26.61 -0.11 -1.32 16 20 C -0.17 -2.32 5.76 -26.65 -0.15 -2.47 16 21 C 0.06 0.73 6.55 -3.83 -0.03 0.70 16 22 N -0.69 -9.74 6.82 -113.82 -0.78 -10.52 16 23 C 0.07 0.89 4.87 -3.84 -0.02 0.87 16 24 H 0.05 1.17 7.93 -51.93 -0.41 0.76 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.04 0.77 5.76 -51.93 -0.30 0.47 16 27 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.39 6.88 7.45 -40.82 -0.30 6.58 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.53 6.44 -51.93 -0.33 0.19 16 34 H 0.06 0.54 6.35 -51.93 -0.33 0.21 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 1.02 7.96 -51.93 -0.41 0.60 16 37 H 0.06 0.73 6.30 -51.93 -0.33 0.40 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.09 1.52 5.99 -51.93 -0.31 1.21 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.35 5.73 7.91 -39.29 -0.31 5.42 16 43 H 0.08 0.91 6.40 -51.93 -0.33 0.58 16 44 H 0.08 0.99 7.12 -51.93 -0.37 0.62 16 LS Contribution 325.42 15.07 4.90 4.90 Total: -1.00 -28.09 325.42 -8.42 -36.51 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -7.37 Total: 12.70 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -0.58 Total: -8.96 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -0.42 Total: -48.68 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.06 Total: -11.98 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.09 -8.42 -36.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062861145.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.981 kcal (2) G-P(sol) polarization free energy of solvation -28.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds