Wall clock time and date at job start Mon Mar 30 2020 05:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46979 * 2 1 4 4 H 1.08999 * 109.47137 * 304.99410 * 3 2 1 5 5 C 1.50699 * 109.47156 * 184.99897 * 3 2 1 6 6 H 1.07999 * 120.00581 * 240.00280 * 5 3 2 7 7 C 1.37884 * 119.99748 * 59.99776 * 5 3 2 8 8 N 1.31509 * 120.00188 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99737 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47347 * 89.99877 * 9 7 5 11 11 H 1.48494 * 109.47025 * 210.00077 * 9 7 5 12 12 H 1.48501 * 109.47352 * 329.99684 * 9 7 5 13 13 N 1.46500 * 109.47373 * 64.99819 * 3 2 1 14 14 C 1.34777 * 119.99981 * 274.99560 * 13 3 2 15 15 O 1.21275 * 120.00166 * 354.57811 * 14 13 3 16 16 C 1.50705 * 119.99709 * 174.57137 * 14 13 3 17 17 C 1.52998 * 109.50398 * 293.65061 * 16 14 13 18 18 C 1.52999 * 109.46802 * 179.97438 * 17 16 14 19 19 C 1.53115 * 109.53043 * 173.55285 * 16 14 13 20 20 C 1.53115 * 109.16336 * 297.69404 * 19 16 14 21 21 C 1.53038 * 109.28083 * 302.34796 * 20 19 16 22 22 N 1.46853 * 109.52007 * 59.17595 * 21 20 19 23 23 C 1.46845 * 111.19761 * 298.25991 * 22 21 20 24 24 H 1.08996 * 109.46894 * 60.00246 * 1 2 3 25 25 H 1.08993 * 109.47187 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47123 * 300.00537 * 1 2 3 27 27 H 1.08993 * 109.47323 * 239.99661 * 2 1 3 28 28 H 1.09004 * 109.46614 * 119.99831 * 2 1 3 29 29 H 0.96998 * 120.00031 * 179.97438 * 8 7 5 30 30 H 0.96995 * 119.99841 * 95.00082 * 13 3 2 31 31 H 1.08997 * 109.47037 * 59.95885 * 17 16 14 32 32 H 1.09004 * 109.47367 * 299.96139 * 17 16 14 33 33 H 1.08998 * 109.47209 * 299.43601 * 18 17 16 34 34 H 1.08998 * 109.47304 * 59.44020 * 18 17 16 35 35 H 1.09004 * 109.46730 * 179.43763 * 18 17 16 36 36 H 1.09004 * 109.52726 * 57.60352 * 19 16 14 37 37 H 1.09001 * 109.52144 * 177.78984 * 19 16 14 38 38 H 1.09005 * 109.50449 * 182.40789 * 20 19 16 39 39 H 1.09000 * 109.53911 * 62.31124 * 20 19 16 40 40 H 1.08999 * 109.46274 * 299.16272 * 21 20 19 41 41 H 1.09000 * 109.46776 * 179.19194 * 21 20 19 42 42 H 1.00896 * 110.99911 * 62.36055 * 22 21 20 43 43 H 1.09000 * 109.46266 * 301.72616 * 23 22 21 44 44 H 1.09003 * 109.45817 * 181.75789 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8800 -1.3811 10 1 6.5539 -0.3520 -0.7597 11 1 6.3835 0.9214 -2.8164 12 1 6.5576 2.0720 -0.6890 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6645 1.3668 15 8 -0.3015 2.7196 0.4050 16 6 -0.0106 3.2299 2.6908 17 6 -0.1720 2.0940 3.7030 18 6 -0.6239 2.6690 5.0469 19 6 -1.3494 3.9516 2.5145 20 6 -1.1651 5.1234 1.5463 21 6 -0.0852 6.0622 2.0890 22 7 1.1759 5.3248 2.2391 23 6 1.0358 4.2235 3.2003 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8293 -0.0604 -2.9502 30 1 2.2719 2.1232 1.9977 31 1 0.7817 1.5815 3.8290 32 1 -0.9189 1.3877 3.3406 33 1 0.1276 3.3679 5.4143 34 1 -1.5727 3.1900 4.9187 35 1 -0.7485 1.8587 5.7653 36 1 -2.0869 3.2579 2.1106 37 1 -1.6909 4.3266 3.4793 38 1 -2.1049 5.6671 1.4498 39 1 -0.8615 4.7454 0.5701 40 1 -0.3960 6.4513 3.0586 41 1 0.0587 6.8902 1.3948 42 1 1.5054 4.9868 1.3473 43 1 0.7198 4.6212 4.1647 44 1 1.9939 3.7161 3.3132 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062861145.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:30 Heat of formation + Delta-G solvation = -80.796044 kcal Electronic energy + Delta-G solvation = -22639.233857 eV Core-core repulsion = 19589.433782 eV Total energy + Delta-G solvation = -3049.800076 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.84621 -38.89236 -36.82607 -35.38070 -34.28307 -32.92237 -32.09677 -30.02972 -28.84181 -25.91793 -24.84917 -24.61828 -22.89025 -22.39236 -21.36373 -20.29687 -18.50180 -17.48665 -17.20357 -16.83664 -16.23906 -16.15196 -15.67846 -15.49642 -15.18726 -14.81340 -14.59974 -14.01457 -13.77005 -13.60919 -13.33874 -13.18788 -13.13841 -13.02846 -12.89081 -12.79909 -12.64517 -12.30541 -12.26448 -12.16107 -12.03400 -11.84046 -11.64110 -11.41648 -11.18315 -11.02780 -10.56096 -10.29728 -9.56471 -9.30875 -8.15939 -6.32768 1.43778 1.44835 1.54958 1.89047 2.36427 2.67596 3.13646 3.36926 3.64060 3.81003 3.89119 4.15083 4.19393 4.30804 4.37194 4.45392 4.52428 4.56321 4.58873 4.67719 4.72065 4.83698 4.86496 4.98345 4.99198 5.03965 5.09142 5.14583 5.20523 5.22225 5.33465 5.41232 5.46777 5.48975 5.56787 5.67326 5.79388 5.94342 6.10072 6.17758 6.25049 6.76337 7.04804 7.35034 7.64528 8.89204 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022100 B = 0.006066 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.656623 B = 4615.133091 C = 4924.468919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.282 3.718 4 H -0.004 1.004 5 C -0.545 4.545 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.703 5.703 14 C 0.508 3.492 15 O -0.585 6.585 16 C -0.107 4.107 17 C -0.106 4.106 18 C -0.146 4.146 19 C -0.087 4.087 20 C -0.164 4.164 21 C 0.060 3.940 22 N -0.691 5.691 23 C 0.070 3.930 24 H 0.023 0.977 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.070 0.930 28 H 0.040 0.960 29 H 0.264 0.736 30 H 0.398 0.602 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.329 0.671 43 H 0.110 0.890 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 6.584 14.905 17.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.178 3.822 4 H 0.014 0.986 5 C -0.583 4.583 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.792 3.208 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.352 5.352 14 C 0.296 3.704 15 O -0.465 6.465 16 C -0.112 4.112 17 C -0.144 4.144 18 C -0.203 4.203 19 C -0.125 4.125 20 C -0.204 4.204 21 C -0.070 4.070 22 N -0.317 5.317 23 C -0.060 4.060 24 H 0.042 0.958 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.233 0.767 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.112 0.888 41 H 0.091 0.909 42 H 0.146 0.854 43 H 0.128 0.872 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.446 6.974 14.511 17.342 hybrid contribution 0.521 -1.078 -1.284 1.756 sum -5.925 5.896 13.227 15.647 Atomic orbital electron populations 1.21642 0.97198 0.99175 0.99932 1.21778 0.93537 0.99444 1.01190 1.18269 0.93421 0.88872 0.81614 0.98610 1.21579 0.91590 1.38643 1.06521 0.91224 1.25736 1.03086 0.94469 0.95068 1.70045 1.36971 1.38536 1.09879 0.85423 0.79454 0.78856 0.77090 1.19700 1.21379 1.18940 1.46270 1.15650 1.56015 1.17229 1.21022 0.81409 0.77399 0.90596 1.90615 1.54965 1.59338 1.41632 1.21646 0.99104 0.98164 0.92272 1.21457 1.02031 0.95678 0.95267 1.21846 1.02071 1.01684 0.94705 1.21398 0.94410 0.96443 1.00202 1.22340 1.00950 0.97573 0.99497 1.22085 0.87225 0.95547 1.02094 1.60764 1.29365 1.27096 1.14520 1.22266 0.96996 0.89669 0.97035 0.95792 0.93543 0.93917 0.91140 0.94134 0.92702 0.76709 0.91246 0.93185 0.90880 0.91777 0.91534 0.93548 0.88444 0.90548 0.93803 0.88818 0.90930 0.85413 0.87163 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.59 71.98 0.62 -4.89 16 2 C -0.12 -5.93 5.45 30.59 0.17 -5.76 16 3 C 0.28 14.30 2.25 44.24 0.10 14.40 16 4 H 0.00 -0.24 7.51 -2.39 -0.02 -0.26 16 5 C -0.55 -28.71 8.73 25.60 0.22 -28.49 16 6 H 0.07 3.46 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.88 5.29 84.66 0.45 1.33 16 8 N -0.92 -52.59 11.29 21.45 0.24 -52.34 16 9 Si 0.97 42.26 29.54 68.60 2.03 44.28 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 13 N -0.70 -28.24 4.90 -446.10 -2.18 -30.43 16 14 C 0.51 19.21 3.44 87.66 0.30 19.51 16 15 O -0.58 -27.05 11.65 -3.01 -0.04 -27.09 16 16 C -0.11 -2.84 0.44 -52.88 -0.02 -2.87 16 17 C -0.11 -2.39 4.96 30.59 0.15 -2.23 16 18 C -0.15 -2.24 9.21 71.98 0.66 -1.57 16 19 C -0.09 -2.21 4.13 30.67 0.13 -2.08 16 20 C -0.16 -4.45 5.76 30.65 0.18 -4.27 16 21 C 0.06 1.40 6.55 86.32 0.57 1.97 16 22 N -0.69 -18.55 6.82 -514.00 -3.51 -22.05 16 23 C 0.07 1.63 4.87 86.32 0.42 2.05 16 24 H 0.02 1.16 7.93 -2.39 -0.02 1.14 16 25 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.04 1.84 5.76 -2.39 -0.01 1.82 16 27 H 0.07 3.90 5.95 -2.39 -0.01 3.89 16 28 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 30 H 0.40 14.01 7.45 -92.71 -0.69 13.32 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 0.94 6.44 -2.39 -0.02 0.92 16 34 H 0.06 0.91 6.35 -2.39 -0.02 0.90 16 35 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.05 1.37 7.96 -2.39 -0.02 1.36 16 37 H 0.10 1.84 6.30 -2.39 -0.02 1.83 16 38 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.04 1.58 5.99 -2.39 -0.01 1.57 16 40 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 42 H 0.33 10.90 7.91 -89.70 -0.71 10.19 16 43 H 0.11 1.96 6.40 -2.39 -0.02 1.95 16 44 H 0.08 1.81 7.12 -2.39 -0.02 1.80 16 Total: -1.00 -63.75 325.42 0.08 -63.67 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: -0.40 Total: 36.87 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 3.94 Total: -12.92 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -5.45 Total: -104.83 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.04 Total: -27.09 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -63.75 0.08 -63.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062861145.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.122 kcal (2) G-P(sol) polarization free energy of solvation -63.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds