Wall clock time and date at job start Mon Mar 30 2020 05:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47256 * 2 1 4 4 H 1.09001 * 109.46912 * 54.99931 * 3 2 1 5 5 C 1.50698 * 109.47433 * 174.99747 * 3 2 1 6 6 H 1.08002 * 120.00125 * 120.00091 * 5 3 2 7 7 C 1.37882 * 120.00153 * 300.00377 * 5 3 2 8 8 N 1.31510 * 119.99758 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99848 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47523 * 59.99973 * 9 7 5 11 11 H 1.48505 * 109.47194 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47550 * 299.99705 * 9 7 5 13 13 N 1.46499 * 109.47242 * 294.99929 * 3 2 1 14 14 C 1.34785 * 119.99729 * 84.99929 * 13 3 2 15 15 O 1.21274 * 119.99836 * 4.06817 * 14 13 3 16 16 C 1.50695 * 119.99687 * 184.07432 * 14 13 3 17 17 C 1.53004 * 109.53316 * 293.02216 * 16 14 13 18 18 C 1.53001 * 109.47007 * 301.50454 * 17 16 14 19 19 C 1.53118 * 109.51036 * 53.12024 * 16 14 13 20 20 C 1.53127 * 109.15805 * 62.28365 * 19 16 14 21 21 C 1.53038 * 109.27358 * 57.65658 * 20 19 16 22 22 N 1.46849 * 109.52746 * 300.82136 * 21 20 19 23 23 C 1.46839 * 111.19773 * 61.74354 * 22 21 20 24 24 H 1.08993 * 109.46865 * 59.99776 * 1 2 3 25 25 H 1.08998 * 109.46952 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46731 * 299.99851 * 1 2 3 27 27 H 1.09000 * 109.47471 * 240.00224 * 2 1 3 28 28 H 1.09001 * 109.47262 * 119.99495 * 2 1 3 29 29 H 0.97000 * 119.99410 * 179.97438 * 8 7 5 30 30 H 0.96991 * 120.00392 * 265.00302 * 13 3 2 31 31 H 1.09000 * 109.47066 * 61.50844 * 17 16 14 32 32 H 1.09004 * 109.46822 * 181.50360 * 17 16 14 33 33 H 1.08998 * 109.47096 * 295.46880 * 18 17 16 34 34 H 1.08997 * 109.47221 * 55.47755 * 18 17 16 35 35 H 1.08999 * 109.46506 * 175.47889 * 18 17 16 36 36 H 1.08998 * 109.52232 * 302.38911 * 19 16 14 37 37 H 1.08994 * 109.52691 * 182.18977 * 19 16 14 38 38 H 1.08997 * 109.50519 * 297.71804 * 20 19 16 39 39 H 1.08999 * 109.50378 * 177.59710 * 20 19 16 40 40 H 1.09004 * 109.46436 * 60.83881 * 21 20 19 41 41 H 1.09006 * 109.46259 * 180.80160 * 21 20 19 42 42 H 1.00897 * 110.99759 * 185.84243 * 22 21 20 43 43 H 1.08993 * 109.46565 * 58.27273 * 23 22 21 44 44 H 1.08999 * 109.46196 * 178.24748 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 3.4062 0.3374 2.1733 9 14 6.0049 0.8801 1.3812 10 1 6.5005 2.2800 1.3809 11 1 6.3979 0.2157 2.6499 12 1 6.5968 0.1453 0.2343 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3111 2.6975 -0.4115 16 6 0.0014 3.2571 -2.6828 17 6 0.8600 4.4833 -2.9994 18 6 0.7194 5.5090 -1.8728 19 6 0.1688 2.2156 -3.7927 20 6 -0.7390 1.0179 -3.4989 21 6 -2.1881 1.4974 -3.3889 22 7 -2.2959 2.4915 -2.3135 23 6 -1.4693 3.6716 -2.5965 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0610 2.9499 30 1 2.2719 2.1231 -1.9977 31 1 1.9039 4.1826 -3.0889 32 1 0.5279 4.9268 -3.9381 33 1 -0.3086 5.8695 -1.8359 34 1 0.9749 5.0415 -0.9219 35 1 1.3917 6.3467 -2.0582 36 1 1.2069 1.8855 -3.8288 37 1 -0.1080 2.6562 -4.7504 38 1 -0.4369 0.5539 -2.5600 39 1 -0.6563 0.2917 -4.3075 40 1 -2.4940 1.9488 -4.3327 41 1 -2.8354 0.6491 -3.1657 42 1 -3.2580 2.7527 -2.1577 43 1 -1.7784 4.1128 -3.5440 44 1 -1.5943 4.4026 -1.7977 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062861146.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:33 Heat of formation + Delta-G solvation = -54.884265 kcal Electronic energy + Delta-G solvation = -22836.845021 eV Core-core repulsion = 19788.168564 eV Total energy + Delta-G solvation = -3048.676456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.22839 -37.16505 -34.85375 -34.18535 -32.32582 -31.54129 -30.60293 -28.95915 -26.86379 -24.14126 -23.66418 -23.10764 -21.80340 -20.54488 -19.49093 -18.53692 -16.77055 -16.27552 -15.39045 -15.24623 -14.90318 -14.52637 -14.11766 -13.77918 -13.66712 -13.36462 -12.85359 -12.83047 -12.60301 -12.44385 -12.09025 -11.73995 -11.61750 -11.32612 -11.19699 -11.10490 -10.95109 -10.83967 -10.78000 -10.68964 -10.22805 -10.12632 -10.05063 -9.93907 -9.42217 -8.93408 -8.58271 -8.37769 -8.09644 -7.57485 -6.04330 -4.13090 3.29033 3.34424 3.35527 3.73485 4.20202 4.38325 4.50583 4.74118 4.99176 5.05689 5.19124 5.26491 5.34277 5.46596 5.52340 5.57711 5.66321 5.72595 5.74946 5.94766 6.00333 6.06443 6.10820 6.19538 6.23815 6.37069 6.40037 6.51777 6.53145 6.68816 6.85336 7.21842 7.26414 7.36675 7.54285 7.59017 7.67815 7.73223 7.89314 8.03923 8.30463 8.85953 8.94798 9.40845 9.57711 11.00733 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024003 B = 0.006353 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.255549 B = 4406.027992 C = 4904.538324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.274 3.726 4 H 0.047 0.953 5 C -0.532 4.532 6 H 0.058 0.942 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.716 5.716 14 C 0.525 3.475 15 O -0.527 6.527 16 C -0.081 4.081 17 C -0.109 4.109 18 C -0.155 4.155 19 C -0.107 4.107 20 C -0.131 4.131 21 C 0.061 3.939 22 N -0.671 5.671 23 C 0.088 3.912 24 H 0.056 0.944 25 H 0.017 0.983 26 H 0.047 0.953 27 H 0.027 0.973 28 H 0.095 0.905 29 H 0.263 0.737 30 H 0.382 0.618 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.021 0.979 41 H 0.070 0.930 42 H 0.339 0.661 43 H 0.024 0.976 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.532 4.943 -12.787 15.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C 0.172 3.828 4 H 0.065 0.935 5 C -0.570 4.570 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.365 5.365 14 C 0.309 3.691 15 O -0.403 6.403 16 C -0.085 4.085 17 C -0.147 4.147 18 C -0.212 4.212 19 C -0.145 4.145 20 C -0.169 4.169 21 C -0.069 4.069 22 N -0.302 5.302 23 C -0.041 4.041 24 H 0.074 0.926 25 H 0.036 0.964 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.214 0.786 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.088 0.912 42 H 0.157 0.843 43 H 0.042 0.958 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.584 4.537 -11.479 14.487 hybrid contribution 0.850 0.315 -1.024 1.368 sum -6.733 4.852 -12.503 15.007 Atomic orbital electron populations 1.21957 0.98181 0.97894 1.02037 1.21912 0.92752 0.99970 1.01838 1.18653 0.93727 0.88987 0.81417 0.93533 1.21233 0.91069 1.38694 1.06039 0.92384 1.24873 0.98308 0.94987 0.95493 1.69894 1.35023 1.37744 1.09332 0.86576 0.85294 0.78225 0.77367 1.20273 1.21203 1.20273 1.46446 1.14860 1.57061 1.18136 1.19724 0.82153 0.78511 0.88700 1.90653 1.52797 1.57663 1.39221 1.21038 0.96132 0.95923 0.95391 1.21517 0.99742 0.94640 0.98828 1.21830 1.01357 0.98608 0.99439 1.21614 1.00476 0.95462 0.96937 1.21794 0.94456 0.97448 1.03165 1.21894 0.97368 0.95656 0.91936 1.60044 1.13292 1.13017 1.43836 1.21691 0.91390 0.92179 0.98864 0.92580 0.96351 0.93378 0.95420 0.88680 0.92653 0.78632 0.91224 0.91780 0.92729 0.91672 0.92851 0.91260 0.92023 0.89517 0.91812 0.96103 0.91196 0.84323 0.95787 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.57 37.16 0.32 -2.96 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.94 2.24 -69.08 -0.16 6.78 16 4 H 0.05 1.38 7.52 -51.93 -0.39 0.99 16 5 C -0.53 -14.18 8.73 -34.44 -0.30 -14.48 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -25.07 11.29 55.43 0.63 -24.44 16 9 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 13 N -0.72 -14.83 4.82 -54.93 -0.26 -15.09 16 14 C 0.53 10.17 2.41 -10.98 -0.03 10.14 16 15 O -0.53 -12.13 12.86 5.56 0.07 -12.06 16 16 C -0.08 -1.19 0.42 -155.58 -0.07 -1.26 16 17 C -0.11 -1.40 4.98 -26.73 -0.13 -1.53 16 18 C -0.16 -2.12 9.29 37.16 0.35 -1.77 16 19 C -0.11 -1.40 4.67 -26.60 -0.12 -1.52 16 20 C -0.13 -1.81 5.84 -26.65 -0.16 -1.96 16 21 C 0.06 0.77 6.55 -3.83 -0.03 0.75 16 22 N -0.67 -9.60 5.89 -113.82 -0.67 -10.27 16 23 C 0.09 1.23 4.47 -3.83 -0.02 1.21 16 24 H 0.06 1.22 3.16 -51.93 -0.16 1.06 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 1.19 7.91 -51.93 -0.41 0.78 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.38 7.14 7.49 -40.82 -0.31 6.84 16 31 H 0.07 0.89 7.99 -51.93 -0.41 0.48 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.69 6.73 -51.93 -0.35 0.34 16 34 H 0.06 1.11 7.01 -51.93 -0.36 0.75 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.90 7.22 -51.93 -0.38 0.53 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.49 4.84 -51.93 -0.25 1.24 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.34 4.15 8.90 -39.29 -0.35 3.80 16 43 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.08 1.23 6.48 -51.93 -0.34 0.89 16 LS Contribution 325.17 15.07 4.90 4.90 Total: -1.00 -29.93 325.17 -8.30 -38.24 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -7.37 Total: 11.04 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -0.58 Total: -8.15 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: -0.31 Total: -49.80 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.07 Total: -12.06 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.93 -8.30 -38.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062861146.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.646 kcal (2) G-P(sol) polarization free energy of solvation -29.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds