Wall clock time and date at job start Mon Mar 30 2020 05:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47256 * 2 1 4 4 H 1.09001 * 109.46912 * 54.99931 * 3 2 1 5 5 C 1.50698 * 109.47433 * 174.99747 * 3 2 1 6 6 H 1.08002 * 120.00125 * 120.00091 * 5 3 2 7 7 C 1.37882 * 120.00153 * 300.00377 * 5 3 2 8 8 N 1.31510 * 119.99758 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99848 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47523 * 59.99973 * 9 7 5 11 11 H 1.48505 * 109.47194 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47550 * 299.99705 * 9 7 5 13 13 N 1.46499 * 109.47242 * 294.99929 * 3 2 1 14 14 C 1.34785 * 119.99729 * 84.99929 * 13 3 2 15 15 O 1.21274 * 119.99836 * 4.06817 * 14 13 3 16 16 C 1.50695 * 119.99687 * 184.07432 * 14 13 3 17 17 C 1.53004 * 109.53316 * 293.02216 * 16 14 13 18 18 C 1.53001 * 109.47007 * 301.50454 * 17 16 14 19 19 C 1.53118 * 109.51036 * 53.12024 * 16 14 13 20 20 C 1.53127 * 109.15805 * 62.28365 * 19 16 14 21 21 C 1.53038 * 109.27358 * 57.65658 * 20 19 16 22 22 N 1.46849 * 109.52746 * 300.82136 * 21 20 19 23 23 C 1.46839 * 111.19773 * 61.74354 * 22 21 20 24 24 H 1.08993 * 109.46865 * 59.99776 * 1 2 3 25 25 H 1.08998 * 109.46952 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46731 * 299.99851 * 1 2 3 27 27 H 1.09000 * 109.47471 * 240.00224 * 2 1 3 28 28 H 1.09001 * 109.47262 * 119.99495 * 2 1 3 29 29 H 0.97000 * 119.99410 * 179.97438 * 8 7 5 30 30 H 0.96991 * 120.00392 * 265.00302 * 13 3 2 31 31 H 1.09000 * 109.47066 * 61.50844 * 17 16 14 32 32 H 1.09004 * 109.46822 * 181.50360 * 17 16 14 33 33 H 1.08998 * 109.47096 * 295.46880 * 18 17 16 34 34 H 1.08997 * 109.47221 * 55.47755 * 18 17 16 35 35 H 1.08999 * 109.46506 * 175.47889 * 18 17 16 36 36 H 1.08998 * 109.52232 * 302.38911 * 19 16 14 37 37 H 1.08994 * 109.52691 * 182.18977 * 19 16 14 38 38 H 1.08997 * 109.50519 * 297.71804 * 20 19 16 39 39 H 1.08999 * 109.50378 * 177.59710 * 20 19 16 40 40 H 1.09004 * 109.46436 * 60.83881 * 21 20 19 41 41 H 1.09006 * 109.46259 * 180.80160 * 21 20 19 42 42 H 1.00897 * 110.99759 * 185.84243 * 22 21 20 43 43 H 1.08993 * 109.46565 * 58.27273 * 23 22 21 44 44 H 1.08999 * 109.46196 * 178.24748 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 3.4062 0.3374 2.1733 9 14 6.0049 0.8801 1.3812 10 1 6.5005 2.2800 1.3809 11 1 6.3979 0.2157 2.6499 12 1 6.5968 0.1453 0.2343 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3111 2.6975 -0.4115 16 6 0.0014 3.2571 -2.6828 17 6 0.8600 4.4833 -2.9994 18 6 0.7194 5.5090 -1.8728 19 6 0.1688 2.2156 -3.7927 20 6 -0.7390 1.0179 -3.4989 21 6 -2.1881 1.4974 -3.3889 22 7 -2.2959 2.4915 -2.3135 23 6 -1.4693 3.6716 -2.5965 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0610 2.9499 30 1 2.2719 2.1231 -1.9977 31 1 1.9039 4.1826 -3.0889 32 1 0.5279 4.9268 -3.9381 33 1 -0.3086 5.8695 -1.8359 34 1 0.9749 5.0415 -0.9219 35 1 1.3917 6.3467 -2.0582 36 1 1.2069 1.8855 -3.8288 37 1 -0.1080 2.6562 -4.7504 38 1 -0.4369 0.5539 -2.5600 39 1 -0.6563 0.2917 -4.3075 40 1 -2.4940 1.9488 -4.3327 41 1 -2.8354 0.6491 -3.1657 42 1 -3.2580 2.7527 -2.1577 43 1 -1.7784 4.1128 -3.5440 44 1 -1.5943 4.4026 -1.7977 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062861146.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:32 Heat of formation + Delta-G solvation = -75.953493 kcal Electronic energy + Delta-G solvation = -22837.758651 eV Core-core repulsion = 19788.168564 eV Total energy + Delta-G solvation = -3049.590087 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.57392 -38.61116 -36.67752 -35.36148 -34.17803 -32.80321 -32.38378 -30.05717 -28.85146 -25.43645 -24.92012 -24.65728 -23.29683 -21.67117 -21.34657 -20.14603 -18.35765 -17.61670 -17.07759 -16.83937 -16.31432 -16.14949 -15.34467 -15.19668 -14.80860 -14.67373 -14.46464 -14.27045 -13.88577 -13.64614 -13.55962 -13.28144 -13.13856 -13.01110 -12.87338 -12.67713 -12.62081 -12.31965 -12.15590 -12.10735 -11.90633 -11.76086 -11.31728 -11.18015 -11.08402 -10.97608 -10.51100 -10.11647 -9.39523 -9.10727 -8.12579 -6.29829 1.43826 1.45874 1.53528 2.22805 2.39326 2.82234 3.16000 3.39976 3.67486 3.88688 3.94117 4.17518 4.26348 4.36168 4.44517 4.50006 4.54319 4.65239 4.66097 4.70867 4.77048 4.84900 4.90032 4.97556 5.00228 5.07754 5.10763 5.13001 5.21210 5.31608 5.32641 5.41715 5.43775 5.57969 5.67928 5.77470 5.90537 6.04892 6.25171 6.28588 6.64368 6.80784 7.24934 7.38548 7.89432 8.92252 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024003 B = 0.006353 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.255549 B = 4406.027992 C = 4904.538324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.116 4.116 3 C 0.285 3.715 4 H -0.009 1.009 5 C -0.547 4.547 6 H 0.068 0.932 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.264 1.264 13 N -0.715 5.715 14 C 0.524 3.476 15 O -0.569 6.569 16 C -0.075 4.075 17 C -0.106 4.106 18 C -0.153 4.153 19 C -0.105 4.105 20 C -0.134 4.134 21 C 0.063 3.937 22 N -0.700 5.700 23 C 0.090 3.910 24 H 0.068 0.932 25 H 0.036 0.964 26 H 0.017 0.983 27 H 0.036 0.964 28 H 0.065 0.935 29 H 0.263 0.737 30 H 0.394 0.606 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.019 0.981 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.046 0.954 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.348 0.652 43 H 0.057 0.943 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.162 5.606 -16.073 18.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.155 4.155 3 C 0.182 3.818 4 H 0.009 0.991 5 C -0.585 4.585 6 H 0.086 0.914 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.792 3.208 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.364 5.364 14 C 0.311 3.689 15 O -0.448 6.448 16 C -0.078 4.078 17 C -0.144 4.144 18 C -0.211 4.211 19 C -0.142 4.142 20 C -0.172 4.172 21 C -0.066 4.066 22 N -0.332 5.332 23 C -0.039 4.039 24 H 0.087 0.913 25 H 0.055 0.945 26 H 0.036 0.964 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.228 0.772 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.081 0.919 34 H 0.038 0.962 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.104 0.896 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.167 0.833 43 H 0.075 0.925 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.218 5.214 -14.808 17.279 hybrid contribution 0.669 0.133 0.032 0.682 sum -6.549 5.347 -14.775 17.023 Atomic orbital electron populations 1.21806 0.96887 0.98741 1.01197 1.21728 0.93796 0.99383 1.00611 1.18167 0.93074 0.88816 0.81785 0.99146 1.21593 0.91836 1.38623 1.06475 0.91380 1.25768 1.03163 0.94513 0.95088 1.70063 1.37018 1.38507 1.09851 0.85478 0.79377 0.78411 0.77535 1.19695 1.21231 1.18908 1.46227 1.16000 1.57302 1.16897 1.20624 0.80824 0.77173 0.90230 1.90635 1.53768 1.58994 1.41394 1.21058 0.97071 0.97028 0.92676 1.21570 0.99517 0.93438 0.99892 1.21808 1.02334 0.99278 0.97632 1.21660 1.00449 0.94636 0.97489 1.21813 0.95362 0.98175 1.01845 1.21903 0.96664 0.95452 0.92570 1.59993 1.14113 1.13748 1.45327 1.21664 0.90665 0.91827 0.99757 0.91294 0.94514 0.96373 0.94562 0.91671 0.92762 0.77243 0.91201 0.87950 0.91859 0.96215 0.91025 0.91300 0.88527 0.93531 0.89616 0.93447 0.91087 0.83328 0.92498 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.12 8.57 71.98 0.62 -5.51 16 2 C -0.12 -5.95 5.45 30.59 0.17 -5.78 16 3 C 0.29 15.07 2.24 44.24 0.10 15.17 16 4 H -0.01 -0.59 7.52 -2.39 -0.02 -0.61 16 5 C -0.55 -29.73 8.73 25.60 0.22 -29.51 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.01 0.80 5.29 84.66 0.45 1.25 16 8 N -0.92 -53.93 11.29 21.45 0.24 -53.69 16 9 Si 0.97 43.00 29.54 68.60 2.03 45.02 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 13 N -0.71 -30.14 4.82 -446.10 -2.15 -32.29 16 14 C 0.52 20.58 2.41 87.65 0.21 20.79 16 15 O -0.57 -27.40 12.86 -3.01 -0.04 -27.44 16 16 C -0.07 -2.04 0.42 -52.87 -0.02 -2.06 16 17 C -0.11 -2.41 4.98 30.60 0.15 -2.26 16 18 C -0.15 -4.02 9.29 71.98 0.67 -3.35 16 19 C -0.10 -2.37 4.67 30.68 0.14 -2.23 16 20 C -0.13 -3.36 5.84 30.65 0.18 -3.18 16 21 C 0.06 1.42 6.55 86.33 0.57 1.99 16 22 N -0.70 -18.98 5.89 -514.00 -3.03 -22.00 16 23 C 0.09 2.31 4.47 86.33 0.39 2.70 16 24 H 0.07 3.10 3.16 -2.39 -0.01 3.09 16 25 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.02 0.92 7.91 -2.39 -0.02 0.90 16 27 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.06 3.75 5.95 -2.39 -0.01 3.73 16 29 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 30 H 0.39 14.59 7.49 -92.71 -0.69 13.89 16 31 H 0.07 1.60 7.99 -2.39 -0.02 1.58 16 32 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.06 1.52 6.73 -2.39 -0.02 1.50 16 34 H 0.02 0.67 7.01 -2.39 -0.02 0.65 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 1.57 7.22 -2.39 -0.02 1.56 16 37 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.05 1.55 4.84 -2.39 -0.01 1.54 16 39 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 40 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 41 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.35 8.07 8.90 -89.70 -0.80 7.27 16 43 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.06 1.84 6.48 -2.39 -0.02 1.83 16 Total: -1.00 -68.73 325.17 0.40 -68.33 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: -0.49 Total: 34.05 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 3.84 Total: -11.98 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -4.94 Total: -107.98 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.04 Total: -27.44 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -68.73 0.40 -68.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062861146.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.622 kcal (2) G-P(sol) polarization free energy of solvation -68.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds