Wall clock time and date at job start Mon Mar 30 2020 05:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47520 * 2 1 4 4 H 1.08997 * 109.47181 * 305.76441 * 3 2 1 5 5 C 1.50700 * 109.47308 * 185.76559 * 3 2 1 6 6 H 1.07998 * 119.99825 * 335.00511 * 5 3 2 7 7 C 1.37875 * 120.00313 * 155.00850 * 5 3 2 8 8 N 1.31523 * 119.99917 * 355.56685 * 7 5 3 9 9 Si 1.86799 * 120.00279 * 175.56646 * 7 5 3 10 10 H 1.48500 * 109.47163 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47219 * 120.00123 * 9 7 5 12 12 H 1.48501 * 109.47197 * 239.99813 * 9 7 5 13 13 N 1.46503 * 109.47213 * 65.76261 * 3 2 1 14 14 C 1.34775 * 120.00010 * 275.00432 * 13 3 2 15 15 O 1.21283 * 120.00028 * 4.54593 * 14 13 3 16 16 C 1.50694 * 119.99960 * 184.54775 * 14 13 3 17 17 C 1.52999 * 109.50460 * 66.51534 * 16 14 13 18 18 C 1.52999 * 109.47194 * 63.94171 * 17 16 14 19 19 C 1.53118 * 109.50577 * 186.63384 * 16 14 13 20 20 C 1.53116 * 109.16047 * 62.28535 * 19 16 14 21 21 C 1.53044 * 109.27690 * 57.65746 * 20 19 16 22 22 N 1.46852 * 109.51943 * 300.82020 * 21 20 19 23 23 C 1.46844 * 111.19667 * 61.74597 * 22 21 20 24 24 H 1.09001 * 109.46438 * 299.99822 * 1 2 3 25 25 H 1.08995 * 109.46891 * 59.99446 * 1 2 3 26 26 H 1.09000 * 109.47333 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46989 * 239.99684 * 2 1 3 28 28 H 1.08998 * 109.47387 * 120.00474 * 2 1 3 29 29 H 0.96998 * 119.99704 * 5.36229 * 8 7 5 30 30 H 0.97003 * 119.99684 * 95.00132 * 13 3 2 31 31 H 1.09002 * 109.47560 * 183.94067 * 17 16 14 32 32 H 1.09005 * 109.47406 * 303.94318 * 17 16 14 33 33 H 1.09001 * 109.47221 * 305.55679 * 18 17 16 34 34 H 1.09008 * 109.47178 * 65.55681 * 18 17 16 35 35 H 1.09002 * 109.47544 * 185.55499 * 18 17 16 36 36 H 1.09000 * 109.52320 * 182.19668 * 19 16 14 37 37 H 1.09006 * 109.51938 * 302.38310 * 19 16 14 38 38 H 1.09004 * 109.50481 * 297.72157 * 20 19 16 39 39 H 1.08997 * 109.50481 * 177.59871 * 20 19 16 40 40 H 1.09001 * 109.45869 * 180.80636 * 21 20 19 41 41 H 1.08995 * 109.46090 * 60.83655 * 21 20 19 42 42 H 1.00895 * 110.99958 * 297.64367 * 22 21 20 43 43 H 1.09009 * 109.45920 * 178.24137 * 23 22 21 44 44 H 1.08994 * 109.46400 * 58.27099 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5950 1.9852 -0.8338 5 6 3.5403 1.4448 -0.1427 6 1 4.1139 0.5851 0.1709 7 6 4.1806 2.5443 -0.6737 8 7 3.4775 3.5552 -1.1359 9 14 6.0468 2.5984 -0.7366 10 1 6.5981 1.3471 -0.1574 11 1 6.4909 2.7290 -2.1476 12 1 6.5349 3.7625 0.0457 13 7 1.6683 2.0919 1.2595 14 6 0.4526 2.6583 1.3924 15 8 -0.3634 2.5590 0.5007 16 6 0.1072 3.4149 2.6491 17 6 0.9723 4.6734 2.7417 18 6 0.6404 5.6073 1.5761 19 6 -1.3714 3.8112 2.6172 20 6 -2.2307 2.5443 2.5847 21 6 -1.9042 1.6809 3.8054 22 7 -0.4788 1.3278 3.7897 23 6 0.3659 2.5264 3.8680 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.5130 3.5623 -1.0331 30 1 2.2972 2.1142 1.9977 31 1 0.7723 5.1834 3.6841 32 1 2.0252 4.3949 2.6956 33 1 0.7458 5.0663 0.6357 34 1 -0.3846 5.9643 1.6770 35 1 1.3234 6.4567 1.5851 36 1 -1.6122 4.3920 3.5076 37 1 -1.5693 4.4084 1.7270 38 1 -2.0176 1.9832 1.6747 39 1 -3.2852 2.8191 2.6049 40 1 -2.5041 0.7712 3.7777 41 1 -2.1305 2.2375 4.7148 42 1 -0.2516 0.7778 2.9749 43 1 1.4150 2.2307 3.8857 44 1 0.1290 3.0789 4.7771 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062861147.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:35 Heat of formation + Delta-G solvation = -69.485796 kcal Electronic energy + Delta-G solvation = -23119.160790 eV Core-core repulsion = 20069.851164 eV Total energy + Delta-G solvation = -3049.309626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.49465 -37.35586 -35.12120 -34.19434 -32.32456 -31.67339 -30.68100 -29.03410 -26.65278 -24.30925 -23.36803 -23.01522 -21.91892 -21.02262 -19.95333 -18.67259 -17.18261 -15.97588 -15.86016 -15.32776 -14.91431 -14.41688 -14.06811 -13.97298 -13.80567 -13.41417 -13.05187 -12.89460 -12.55473 -12.33353 -12.15265 -12.04991 -11.74933 -11.41097 -11.26632 -11.08539 -10.96595 -10.82951 -10.72892 -10.66408 -10.58403 -10.28219 -10.20850 -10.07104 -9.77302 -9.07583 -8.61619 -8.47726 -8.20184 -7.72735 -6.54858 -4.35192 3.34783 3.35044 3.47632 3.50778 4.16668 4.38149 4.46406 4.82277 4.95951 5.09171 5.21976 5.29628 5.41371 5.50067 5.56102 5.66115 5.68838 5.78044 5.91349 5.95674 6.01913 6.03735 6.06298 6.09753 6.19513 6.24783 6.29548 6.38377 6.45596 6.59051 6.66179 6.72477 6.83906 6.96422 7.06862 7.10027 7.30979 7.49317 7.70101 7.91553 8.26618 8.62114 8.81347 9.24798 9.44545 10.81950 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021426 B = 0.007344 C = 0.006402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.514407 B = 3811.780842 C = 4372.715832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.118 4.118 3 C 0.244 3.756 4 H 0.051 0.949 5 C -0.609 4.609 6 H 0.056 0.944 7 C 0.032 3.968 8 N -0.890 5.890 9 Si 1.072 2.928 10 H -0.287 1.287 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.700 5.700 14 C 0.509 3.491 15 O -0.555 6.555 16 C -0.121 4.121 17 C -0.103 4.103 18 C -0.151 4.151 19 C -0.089 4.089 20 C -0.166 4.166 21 C 0.056 3.944 22 N -0.685 5.685 23 C 0.070 3.930 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.026 0.974 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.277 0.723 30 H 0.384 0.616 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.344 0.656 43 H 0.077 0.923 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.551 0.077 9.773 11.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C 0.144 3.856 4 H 0.069 0.931 5 C -0.647 4.647 6 H 0.074 0.926 7 C -0.177 4.177 8 N -0.524 5.524 9 Si 0.900 3.100 10 H -0.213 1.213 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.349 5.349 14 C 0.294 3.706 15 O -0.435 6.435 16 C -0.126 4.126 17 C -0.142 4.142 18 C -0.208 4.208 19 C -0.126 4.126 20 C -0.205 4.205 21 C -0.073 4.073 22 N -0.314 5.314 23 C -0.061 4.061 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.217 0.783 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.163 0.837 43 H 0.096 0.904 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.806 0.745 9.255 10.951 hybrid contribution -1.062 -0.380 -0.016 1.128 sum -6.868 0.365 9.239 11.518 Atomic orbital electron populations 1.21902 0.97075 0.98403 1.02348 1.21824 0.94164 0.99255 1.00401 1.18871 0.95002 0.88568 0.83167 0.93087 1.22162 0.91152 1.04272 1.47141 0.92593 1.25959 1.07060 0.92576 0.92104 1.70702 1.09673 1.32385 1.39642 0.83503 0.73970 0.75592 0.76917 1.21306 1.21159 1.21266 1.47618 1.13772 1.55376 1.18146 1.20254 0.83103 0.79422 0.87805 1.90586 1.48916 1.61447 1.42533 1.21732 0.97519 0.97202 0.96159 1.21431 0.99467 0.94312 0.98971 1.21774 1.00614 0.99283 0.99113 1.21354 0.92160 0.97436 1.01689 1.22409 0.99395 0.98032 1.00691 1.22026 0.89061 0.98803 0.97438 1.60729 1.03987 1.19686 1.46995 1.22071 0.97915 0.90170 0.95909 0.92894 0.93045 0.95489 0.92558 0.93671 0.91134 0.78277 0.91786 0.91226 0.91869 0.93008 0.92875 0.92428 0.90990 0.89492 0.92219 0.91236 0.91424 0.83690 0.90448 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.48 37.16 0.32 -2.44 16 2 C -0.12 -2.49 5.58 -26.73 -0.15 -2.64 16 3 C 0.24 5.80 1.95 -69.08 -0.13 5.66 16 4 H 0.05 1.42 6.18 -51.93 -0.32 1.10 16 5 C -0.61 -15.70 8.50 -34.44 -0.29 -15.99 16 6 H 0.06 1.44 7.81 -52.49 -0.41 1.03 16 7 C 0.03 0.85 5.46 -17.82 -0.10 0.75 16 8 N -0.89 -25.40 13.62 55.43 0.76 -24.64 16 9 Si 1.07 23.67 29.91 -169.99 -5.08 18.59 16 10 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.89 16 12 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.70 -14.38 4.87 -54.94 -0.27 -14.65 16 14 C 0.51 9.78 2.70 -10.99 -0.03 9.75 16 15 O -0.55 -12.21 10.87 5.55 0.06 -12.15 16 16 C -0.12 -1.86 0.44 -155.58 -0.07 -1.93 16 17 C -0.10 -1.54 4.97 -26.73 -0.13 -1.68 16 18 C -0.15 -2.46 9.17 37.16 0.34 -2.11 16 19 C -0.09 -1.29 3.89 -26.61 -0.10 -1.40 16 20 C -0.17 -2.37 5.76 -26.65 -0.15 -2.52 16 21 C 0.06 0.73 6.55 -3.83 -0.03 0.70 16 22 N -0.69 -9.76 6.82 -113.81 -0.78 -10.53 16 23 C 0.07 0.96 5.20 -3.84 -0.02 0.94 16 24 H 0.05 1.04 4.23 -51.93 -0.22 0.82 16 25 H 0.05 1.09 7.84 -51.93 -0.41 0.68 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.28 8.11 6.66 -40.82 -0.27 7.83 16 30 H 0.38 7.52 7.51 -40.82 -0.31 7.21 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.12 8.11 -51.93 -0.42 0.70 16 33 H 0.06 1.27 7.17 -51.93 -0.37 0.90 16 34 H 0.05 0.76 6.76 -51.92 -0.35 0.41 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.17 6.46 -51.93 -0.34 0.84 16 38 H 0.09 1.50 5.80 -51.93 -0.30 1.20 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.34 5.48 6.81 -39.29 -0.27 5.21 16 43 H 0.08 1.07 7.13 -51.92 -0.37 0.70 16 44 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 325.97 15.07 4.91 4.91 Total: -1.00 -27.75 325.97 -8.33 -36.08 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -7.38 Total: 15.30 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -0.55 Total: -12.91 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -0.29 Total: -49.82 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.06 Total: -12.15 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: -5.08 Total: 18.59 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.75 -8.33 -36.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062861147.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.409 kcal (2) G-P(sol) polarization free energy of solvation -27.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds