Wall clock time and date at job start Mon Mar 30 2020 05:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47120 * 2 1 4 4 C 1.52999 * 109.46920 * 119.99665 * 2 1 3 5 5 N 1.46498 * 109.47058 * 175.10880 * 4 2 1 6 6 C 1.46499 * 120.00099 * 96.07426 * 5 4 2 7 7 C 1.50703 * 109.47323 * 78.03437 * 6 5 4 8 8 H 1.08007 * 119.99674 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00154 * 180.27436 * 7 6 5 10 10 N 1.31517 * 120.00150 * 179.72550 * 9 7 6 11 11 Si 1.86797 * 120.00104 * 359.72550 * 9 7 6 12 12 H 1.48500 * 109.47136 * 90.00017 * 11 9 7 13 13 H 1.48497 * 109.47439 * 209.99923 * 11 9 7 14 14 H 1.48499 * 109.47200 * 330.00232 * 11 9 7 15 15 C 1.34777 * 119.99948 * 276.06728 * 5 4 2 16 16 O 1.21280 * 119.99776 * 0.81898 * 15 5 4 17 17 C 1.50701 * 120.00118 * 180.80953 * 15 5 4 18 18 C 1.53000 * 110.29021 * 291.82641 * 17 15 5 19 19 C 1.54263 * 110.32345 * 169.69626 * 17 15 5 20 20 C 1.54381 * 105.05824 * 241.10775 * 19 17 15 21 21 N 1.48564 * 104.59755 * 23.85500 * 20 19 17 22 22 C 1.48558 * 104.21801 * 320.51584 * 21 20 19 23 23 H 1.08996 * 109.47328 * 300.00266 * 1 2 3 24 24 H 1.09002 * 109.46964 * 60.00505 * 1 2 3 25 25 H 1.09001 * 109.47070 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47328 * 239.99734 * 2 1 3 27 27 H 1.09000 * 109.47484 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46790 * 299.99601 * 3 2 1 29 29 H 1.09001 * 109.47370 * 59.99239 * 3 2 1 30 30 H 1.09004 * 109.47079 * 55.10624 * 4 2 1 31 31 H 1.09003 * 109.46900 * 295.10775 * 4 2 1 32 32 H 1.08994 * 109.47203 * 318.03879 * 6 5 4 33 33 H 1.09004 * 109.47000 * 198.03339 * 6 5 4 34 34 H 0.96993 * 120.00052 * 180.02562 * 10 9 7 35 35 H 1.08999 * 109.46994 * 66.99546 * 18 17 15 36 36 H 1.08997 * 109.47149 * 186.99236 * 18 17 15 37 37 H 1.08998 * 109.47289 * 306.99521 * 18 17 15 38 38 H 1.09003 * 110.32235 * 0.02562 * 19 17 15 39 39 H 1.08994 * 110.32480 * 122.10868 * 19 17 15 40 40 H 1.09007 * 110.40894 * 142.63207 * 20 19 17 41 41 H 1.08997 * 110.40998 * 264.95359 * 20 19 17 42 42 H 1.00899 * 110.99685 * 200.96061 * 21 20 19 43 43 H 1.08999 * 110.41271 * 280.70544 * 22 21 20 44 44 H 1.09000 * 110.40968 * 158.26259 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5002 -0.8240 1.1919 6 6 4.3319 0.1673 1.8787 7 6 4.3644 -0.1395 3.3538 8 1 3.8202 -0.9883 3.7409 9 6 5.0845 0.6664 4.2099 10 7 5.1084 0.4018 5.4979 11 14 6.0262 2.1341 3.5403 12 1 5.1484 3.3318 3.5499 13 1 7.2178 2.3870 4.3895 14 1 6.4611 1.8503 2.1490 15 6 4.0784 -1.8308 0.5073 16 8 3.3901 -2.6430 -0.0735 17 6 5.5803 -1.9471 0.4635 18 6 6.1786 -0.7921 -0.3422 19 6 5.9952 -3.3001 -0.1504 20 6 6.7896 -4.0183 0.9615 21 7 6.3063 -3.4027 2.2243 22 6 6.1589 -1.9617 1.8947 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6068 -1.7204 1.2942 31 1 1.7499 -0.1591 2.1371 32 1 3.9142 1.1620 1.7237 33 1 5.3450 0.1320 1.4779 34 1 5.6147 0.9690 6.1002 35 1 6.0151 0.1450 0.1898 36 1 7.2486 -0.9549 -0.4710 37 1 5.6982 -0.7437 -1.3195 38 1 5.1125 -3.8799 -0.4204 39 1 6.6250 -3.1415 -1.0257 40 1 6.5745 -5.0869 0.9528 41 1 7.8586 -3.8456 0.8371 42 1 6.9726 -3.5368 2.9700 43 1 7.1291 -1.4653 1.9175 44 1 5.4689 -1.4816 2.5886 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062896209.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:44 Heat of formation + Delta-G solvation = -30.744849 kcal Electronic energy + Delta-G solvation = -22835.348009 eV Core-core repulsion = 19787.718316 eV Total energy + Delta-G solvation = -3047.629693 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.18093 -37.36528 -35.95674 -34.26212 -32.45468 -31.73944 -28.93406 -28.06076 -26.85205 -25.93898 -25.21391 -22.66816 -21.32087 -20.87554 -19.71749 -17.81395 -17.19552 -16.08325 -15.72740 -15.65313 -14.91355 -14.61525 -14.16520 -13.95504 -13.35668 -13.15454 -12.99209 -12.75228 -12.42702 -12.36134 -12.25736 -11.97050 -11.88787 -11.58202 -11.38632 -11.16855 -11.10392 -10.89757 -10.84890 -10.78781 -10.49866 -10.30617 -10.20981 -10.14816 -9.96374 -9.51657 -8.89423 -8.74738 -7.99024 -7.67430 -6.29538 -4.27457 3.10998 3.17954 3.21244 3.41985 3.88308 4.18812 4.79572 4.96944 5.01045 5.06157 5.25748 5.29937 5.38935 5.44245 5.55582 5.59696 5.74050 5.87052 5.90741 5.98053 6.02664 6.05906 6.11654 6.13048 6.21877 6.25769 6.29893 6.32555 6.38775 6.42069 6.52489 6.60423 6.69322 6.70557 6.77365 7.10709 7.32885 7.42172 7.53934 7.82862 8.13027 8.43470 8.79115 9.00037 9.29111 10.81809 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.011749 B = 0.011270 C = 0.006945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.642024 B = 2483.786147 C = 4030.546239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C -0.146 4.146 4 C 0.127 3.873 5 N -0.585 5.585 6 C 0.186 3.814 7 C -0.538 4.538 8 H 0.085 0.915 9 C 0.080 3.920 10 N -0.880 5.880 11 Si 0.864 3.136 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.263 1.263 15 C 0.537 3.463 16 O -0.566 6.566 17 C -0.081 4.081 18 C -0.146 4.146 19 C -0.112 4.112 20 C 0.033 3.967 21 N -0.658 5.658 22 C 0.000 4.000 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.029 0.971 33 H 0.053 0.947 34 H 0.268 0.732 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.030 0.970 42 H 0.333 0.667 43 H 0.033 0.967 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.730 0.082 -9.747 9.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 C -0.203 4.203 4 C 0.004 3.996 5 N -0.314 5.314 6 C 0.065 3.935 7 C -0.575 4.575 8 H 0.103 0.897 9 C -0.125 4.125 10 N -0.517 5.517 11 Si 0.691 3.309 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.187 1.187 15 C 0.325 3.675 16 O -0.446 6.446 17 C -0.084 4.084 18 C -0.203 4.203 19 C -0.151 4.151 20 C -0.097 4.097 21 N -0.286 5.286 22 C -0.127 4.127 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.049 0.951 42 H 0.148 0.852 43 H 0.052 0.948 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.275 -0.458 -9.874 9.888 hybrid contribution 1.699 1.216 -0.178 2.097 sum 1.424 0.758 -10.052 10.181 Atomic orbital electron populations 1.21740 0.95248 1.01551 1.01354 1.21487 0.95384 0.96566 0.99660 1.21898 1.01616 0.95841 1.00977 1.21350 0.80470 1.00614 0.97169 1.47754 1.06270 1.27458 1.49912 1.20387 0.91687 0.87851 0.93560 1.21261 1.32162 1.14368 0.89738 0.89703 1.24880 0.95944 0.97016 0.94638 1.69892 1.40640 1.38519 1.02633 0.87026 0.80368 0.83834 0.79712 1.19727 1.20789 1.18727 1.20092 0.89635 0.80053 0.77702 1.90547 1.64915 1.42257 1.46892 1.21340 0.93070 0.96465 0.97573 1.22119 1.00375 0.98179 0.99672 1.22390 1.00911 0.94955 0.96795 1.22929 0.96089 0.99372 0.91263 1.63813 1.48192 1.11148 1.05464 1.24402 1.02041 0.89493 0.96787 0.92636 0.93090 0.92749 0.91272 0.92288 0.93613 0.92561 0.91295 0.89918 0.95314 0.92944 0.92228 0.90589 0.92114 0.92466 0.89122 0.91749 0.90876 0.95141 0.85239 0.94845 0.81636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.19 37.16 0.34 -1.52 16 2 C -0.11 -1.76 3.08 -90.62 -0.28 -2.04 16 3 C -0.15 -2.18 8.38 37.16 0.31 -1.87 16 4 C 0.13 2.38 4.73 -4.04 -0.02 2.36 16 5 N -0.59 -11.95 2.17 -175.06 -0.38 -12.33 16 6 C 0.19 3.96 2.78 -5.19 -0.01 3.94 16 7 C -0.54 -13.44 6.96 -34.44 -0.24 -13.68 16 8 H 0.09 2.43 8.06 -52.48 -0.42 2.00 16 9 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 10 N -0.88 -24.46 13.96 55.43 0.77 -23.69 16 11 Si 0.86 18.95 27.46 -169.99 -4.67 14.28 16 12 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.26 -5.36 6.55 56.52 0.37 -4.99 16 15 C 0.54 11.25 6.45 -10.98 -0.07 11.18 16 16 O -0.57 -12.94 15.00 5.56 0.08 -12.85 16 17 C -0.08 -1.49 0.68 -154.27 -0.10 -1.60 16 18 C -0.15 -2.33 7.97 37.16 0.30 -2.04 16 19 C -0.11 -1.88 6.22 -25.35 -0.16 -2.04 16 20 C 0.03 0.52 7.47 -2.18 -0.02 0.51 16 21 N -0.66 -12.21 7.62 -109.65 -0.84 -13.04 16 22 C 0.00 0.01 5.34 -2.18 -0.01 0.00 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.06 0.95 6.14 -51.93 -0.32 0.63 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.35 7.62 -51.93 -0.40 0.95 16 31 H 0.08 1.56 8.00 -51.93 -0.42 1.15 16 32 H 0.03 0.60 5.66 -51.93 -0.29 0.31 16 33 H 0.05 1.09 2.04 -51.93 -0.11 0.99 16 34 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.08 1.27 5.34 -51.93 -0.28 1.00 16 36 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 1.69 6.52 -51.93 -0.34 1.35 16 39 H 0.06 0.92 7.71 -51.93 -0.40 0.52 16 40 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 41 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.33 5.60 8.92 -39.29 -0.35 5.25 16 43 H 0.03 0.63 7.87 -51.93 -0.41 0.22 16 44 H 0.17 3.82 2.93 -51.93 -0.15 3.67 16 LS Contribution 328.21 15.07 4.95 4.95 Total: -1.00 -28.21 328.21 -7.42 -35.63 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -7.27 Total: 11.91 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -0.06 Total: -4.84 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: -0.44 Total: -49.07 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.08 Total: -12.85 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.67 Total: 14.28 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.21 -7.42 -35.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062896209.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.883 kcal (2) G-P(sol) polarization free energy of solvation -28.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds