Wall clock time and date at job start Mon Mar 30 2020 05:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47120 * 2 1 4 4 C 1.52999 * 109.46920 * 119.99665 * 2 1 3 5 5 N 1.46498 * 109.47058 * 175.10880 * 4 2 1 6 6 C 1.46499 * 120.00099 * 96.07426 * 5 4 2 7 7 C 1.50703 * 109.47323 * 78.03437 * 6 5 4 8 8 H 1.08007 * 119.99674 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00154 * 180.27436 * 7 6 5 10 10 N 1.31517 * 120.00150 * 179.72550 * 9 7 6 11 11 Si 1.86797 * 120.00104 * 359.72550 * 9 7 6 12 12 H 1.48500 * 109.47136 * 90.00017 * 11 9 7 13 13 H 1.48497 * 109.47439 * 209.99923 * 11 9 7 14 14 H 1.48499 * 109.47200 * 330.00232 * 11 9 7 15 15 C 1.34777 * 119.99948 * 276.06728 * 5 4 2 16 16 O 1.21280 * 119.99776 * 0.81898 * 15 5 4 17 17 C 1.50701 * 120.00118 * 180.80953 * 15 5 4 18 18 C 1.53000 * 110.29021 * 291.82641 * 17 15 5 19 19 C 1.54263 * 110.32345 * 169.69626 * 17 15 5 20 20 C 1.54381 * 105.05824 * 241.10775 * 19 17 15 21 21 N 1.48564 * 104.59755 * 23.85500 * 20 19 17 22 22 C 1.48558 * 104.21801 * 320.51584 * 21 20 19 23 23 H 1.08996 * 109.47328 * 300.00266 * 1 2 3 24 24 H 1.09002 * 109.46964 * 60.00505 * 1 2 3 25 25 H 1.09001 * 109.47070 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47328 * 239.99734 * 2 1 3 27 27 H 1.09000 * 109.47484 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46790 * 299.99601 * 3 2 1 29 29 H 1.09001 * 109.47370 * 59.99239 * 3 2 1 30 30 H 1.09004 * 109.47079 * 55.10624 * 4 2 1 31 31 H 1.09003 * 109.46900 * 295.10775 * 4 2 1 32 32 H 1.08994 * 109.47203 * 318.03879 * 6 5 4 33 33 H 1.09004 * 109.47000 * 198.03339 * 6 5 4 34 34 H 0.96993 * 120.00052 * 180.02562 * 10 9 7 35 35 H 1.08999 * 109.46994 * 66.99546 * 18 17 15 36 36 H 1.08997 * 109.47149 * 186.99236 * 18 17 15 37 37 H 1.08998 * 109.47289 * 306.99521 * 18 17 15 38 38 H 1.09003 * 110.32235 * 0.02562 * 19 17 15 39 39 H 1.08994 * 110.32480 * 122.10868 * 19 17 15 40 40 H 1.09007 * 110.40894 * 142.63207 * 20 19 17 41 41 H 1.08997 * 110.40998 * 264.95359 * 20 19 17 42 42 H 1.00899 * 110.99685 * 200.96061 * 21 20 19 43 43 H 1.08999 * 110.41271 * 280.70544 * 22 21 20 44 44 H 1.09000 * 110.40968 * 158.26259 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5002 -0.8240 1.1919 6 6 4.3319 0.1673 1.8787 7 6 4.3644 -0.1395 3.3538 8 1 3.8202 -0.9883 3.7409 9 6 5.0845 0.6664 4.2099 10 7 5.1084 0.4018 5.4979 11 14 6.0262 2.1341 3.5403 12 1 5.1484 3.3318 3.5499 13 1 7.2178 2.3870 4.3895 14 1 6.4611 1.8503 2.1490 15 6 4.0784 -1.8308 0.5073 16 8 3.3901 -2.6430 -0.0735 17 6 5.5803 -1.9471 0.4635 18 6 6.1786 -0.7921 -0.3422 19 6 5.9952 -3.3001 -0.1504 20 6 6.7896 -4.0183 0.9615 21 7 6.3063 -3.4027 2.2243 22 6 6.1589 -1.9617 1.8947 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6068 -1.7204 1.2942 31 1 1.7499 -0.1591 2.1371 32 1 3.9142 1.1620 1.7237 33 1 5.3450 0.1320 1.4779 34 1 5.6147 0.9690 6.1002 35 1 6.0151 0.1450 0.1898 36 1 7.2486 -0.9549 -0.4710 37 1 5.6982 -0.7437 -1.3195 38 1 5.1125 -3.8799 -0.4204 39 1 6.6250 -3.1415 -1.0257 40 1 6.5745 -5.0869 0.9528 41 1 7.8586 -3.8456 0.8371 42 1 6.9726 -3.5368 2.9700 43 1 7.1291 -1.4653 1.9175 44 1 5.4689 -1.4816 2.5886 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062896209.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:44 Heat of formation + Delta-G solvation = -49.568957 kcal Electronic energy + Delta-G solvation = -22836.164283 eV Core-core repulsion = 19787.718316 eV Total energy + Delta-G solvation = -3048.445967 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.73734 -38.80416 -37.55403 -35.80185 -34.30930 -33.12824 -30.48353 -29.69241 -28.02051 -27.38236 -26.61766 -24.48526 -22.78967 -22.27346 -21.06256 -19.40715 -19.10085 -17.66613 -17.26635 -17.12631 -16.44520 -16.13430 -15.77593 -15.35174 -14.79940 -14.66970 -14.47427 -14.26996 -14.00596 -13.76313 -13.67558 -13.25791 -13.07016 -12.97740 -12.91197 -12.65826 -12.60313 -12.44209 -12.23121 -12.18699 -11.89225 -11.80279 -11.66497 -11.59844 -11.54936 -11.25788 -10.73761 -10.47044 -9.39716 -9.35172 -8.27766 -6.29780 1.39661 1.41254 1.49720 1.78660 2.31769 2.34689 3.02617 3.46950 3.55719 3.65530 3.91935 4.01107 4.06547 4.19244 4.21722 4.33302 4.44769 4.55310 4.62953 4.69143 4.71338 4.74940 4.82306 4.86741 4.89206 4.94361 4.95286 5.00361 5.04543 5.06686 5.20676 5.23074 5.25509 5.39749 5.44714 5.46962 5.63213 5.79749 5.98142 6.22162 6.48020 6.67937 6.75147 7.25282 7.39547 8.87547 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.011749 B = 0.011270 C = 0.006945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.642024 B = 2483.786147 C = 4030.546239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 C -0.143 4.143 4 C 0.123 3.877 5 N -0.588 5.588 6 C 0.197 3.803 7 C -0.526 4.526 8 H 0.031 0.969 9 C 0.028 3.972 10 N -0.933 5.933 11 Si 0.925 3.075 12 H -0.265 1.265 13 H -0.285 1.285 14 H -0.232 1.232 15 C 0.527 3.473 16 O -0.592 6.592 17 C -0.083 4.083 18 C -0.142 4.142 19 C -0.110 4.110 20 C 0.037 3.963 21 N -0.683 5.683 22 C 0.000 4.000 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.268 0.732 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.339 0.661 43 H 0.046 0.954 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.103 1.472 -12.232 12.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.122 4.122 3 C -0.200 4.200 4 C 0.000 4.000 5 N -0.316 5.316 6 C 0.076 3.924 7 C -0.564 4.564 8 H 0.049 0.951 9 C -0.172 4.172 10 N -0.572 5.572 11 Si 0.748 3.252 12 H -0.190 1.190 13 H -0.211 1.211 14 H -0.154 1.154 15 C 0.317 3.683 16 O -0.474 6.474 17 C -0.087 4.087 18 C -0.199 4.199 19 C -0.148 4.148 20 C -0.092 4.092 21 N -0.312 5.312 22 C -0.128 4.128 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.155 0.845 43 H 0.064 0.936 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.086 0.927 -12.381 12.463 hybrid contribution 1.189 0.638 0.655 1.500 sum 2.275 1.565 -11.726 12.046 Atomic orbital electron populations 1.21713 0.93108 1.01853 1.02752 1.21390 0.97127 0.96716 0.96987 1.21868 1.00849 0.95046 1.02254 1.21445 0.79941 0.99941 0.98641 1.47835 1.06852 1.27413 1.49527 1.20260 0.92777 0.88346 0.91015 1.21240 1.30911 1.12409 0.91880 0.95062 1.25666 0.96952 1.00059 0.94556 1.70048 1.42442 1.40344 1.04378 0.86044 0.78789 0.79885 0.80516 1.19011 1.21053 1.15449 1.20679 0.91005 0.79473 0.77190 1.90526 1.65880 1.42961 1.48072 1.21437 0.91043 0.98750 0.97440 1.22114 1.02062 0.96311 0.99453 1.22405 1.00632 0.93584 0.98176 1.22981 0.97439 0.99459 0.89316 1.63739 1.49528 1.10730 1.07234 1.24155 1.01736 0.90198 0.96747 0.92001 0.90875 0.93085 0.92644 0.93434 0.91083 0.92520 0.93144 0.90843 0.94136 0.91388 0.92274 0.91375 0.89299 0.91363 0.91531 0.88584 0.90084 0.92319 0.84515 0.93554 0.85143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.19 71.98 0.66 -2.74 16 2 C -0.10 -3.16 3.08 -10.79 -0.03 -3.20 16 3 C -0.14 -3.97 8.38 71.98 0.60 -3.36 16 4 C 0.12 4.73 4.73 86.38 0.41 5.14 16 5 N -0.59 -24.27 2.17 -826.15 -1.79 -26.06 16 6 C 0.20 8.29 2.78 85.63 0.24 8.53 16 7 C -0.53 -27.09 6.96 25.60 0.18 -26.91 16 8 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 9 C 0.03 1.44 5.47 84.65 0.46 1.91 16 10 N -0.93 -53.66 13.96 21.45 0.30 -53.36 16 11 Si 0.93 38.08 27.46 68.60 1.88 39.96 16 12 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 13 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 14 H -0.23 -8.31 6.55 99.48 0.65 -7.66 16 15 C 0.53 22.08 6.45 87.66 0.57 22.65 16 16 O -0.59 -27.46 15.00 -3.03 -0.05 -27.51 16 17 C -0.08 -2.93 0.68 -52.03 -0.04 -2.97 16 18 C -0.14 -4.04 7.97 71.98 0.57 -3.47 16 19 C -0.11 -3.44 6.22 31.49 0.20 -3.24 16 20 C 0.04 1.08 7.47 86.45 0.65 1.73 16 21 N -0.68 -24.94 7.62 -500.84 -3.82 -28.76 16 22 C 0.00 0.00 5.34 86.45 0.46 0.46 16 23 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.05 1.42 6.14 -2.39 -0.01 1.40 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.05 2.08 7.62 -2.38 -0.02 2.06 16 31 H 0.07 2.89 8.00 -2.39 -0.02 2.87 16 32 H 0.04 1.63 5.66 -2.39 -0.01 1.61 16 33 H 0.07 2.70 2.04 -2.38 0.00 2.69 16 34 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 35 H 0.07 2.04 5.34 -2.39 -0.01 2.02 16 36 H 0.09 2.04 8.13 -2.39 -0.02 2.02 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.07 2.42 6.52 -2.39 -0.02 2.41 16 39 H 0.10 2.37 7.71 -2.39 -0.02 2.36 16 40 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 41 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.34 11.26 8.92 -89.69 -0.80 10.46 16 43 H 0.05 1.64 7.87 -2.39 -0.02 1.62 16 44 H 0.13 6.10 2.93 -2.39 -0.01 6.10 16 Total: -1.00 -63.70 328.21 1.59 -62.11 By element: Atomic # 1 Polarization: 38.95 SS G_CDS: 0.13 Total: 39.08 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 4.93 Total: -5.48 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -5.31 Total: -108.17 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.05 Total: -27.51 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 1.88 Total: 39.96 kcal Total: -63.70 1.59 -62.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062896209.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.541 kcal (2) G-P(sol) polarization free energy of solvation -63.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds