Wall clock time and date at job start Mon Mar 30 2020 04:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 C 1.53010 * 109.46922 * 180.02562 * 3 2 1 5 5 H 1.08997 * 110.76490 * 51.80385 * 4 3 2 6 6 C 1.55133 * 110.70399 * 288.60197 * 4 3 2 7 7 C 1.54907 * 101.65312 * 205.96493 * 6 4 3 8 8 N 1.47848 * 104.79408 * 37.06804 * 7 6 4 9 9 C 1.46903 * 111.00390 * 213.63505 * 8 7 6 10 10 C 1.50703 * 109.47113 * 290.84962 * 9 8 7 11 11 O 1.21277 * 119.99973 * 359.97438 * 10 9 8 12 12 N 1.34770 * 119.99486 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00642 * 359.97438 * 12 10 9 14 14 C 1.46503 * 119.99985 * 179.97438 * 12 10 9 15 15 C 1.50699 * 109.46825 * 89.99806 * 14 12 10 16 16 H 1.07999 * 120.00803 * 0.02562 * 15 14 12 17 17 C 1.37881 * 119.99889 * 180.02562 * 15 14 12 18 18 N 1.31520 * 120.00186 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00030 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 89.99863 * 19 17 15 21 21 H 1.48503 * 109.47261 * 330.00044 * 19 17 15 22 22 H 1.48500 * 109.47454 * 210.00037 * 19 17 15 23 23 C 1.47439 * 108.56778 * 335.90824 * 8 7 6 24 24 H 1.08997 * 109.47118 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46697 * 299.99364 * 1 2 3 26 26 H 1.08994 * 109.47470 * 59.99392 * 1 2 3 27 27 H 1.09006 * 109.46697 * 240.00636 * 2 1 3 28 28 H 1.09001 * 109.47578 * 120.00922 * 2 1 3 29 29 H 1.09006 * 109.46749 * 60.00668 * 3 2 1 30 30 H 1.08994 * 109.47377 * 300.00664 * 3 2 1 31 31 H 1.08995 * 110.99744 * 324.05626 * 6 4 3 32 32 H 1.08998 * 110.99394 * 87.83918 * 6 4 3 33 33 H 1.09006 * 110.37174 * 278.24628 * 7 6 4 34 34 H 1.09001 * 110.37912 * 155.89938 * 7 6 4 35 35 H 1.08994 * 109.47072 * 170.84377 * 9 8 7 36 36 H 1.09003 * 109.46531 * 50.84856 * 9 8 7 37 37 H 1.08998 * 109.47520 * 270.00344 * 13 12 10 38 38 H 1.09010 * 109.46689 * 30.00052 * 13 12 10 39 39 H 1.09003 * 109.47452 * 149.99727 * 13 12 10 40 40 H 1.09004 * 109.46958 * 330.00217 * 14 12 10 41 41 H 1.08997 * 109.47731 * 209.99893 * 14 12 10 42 42 H 0.96998 * 120.00124 * 180.02562 * 18 17 15 43 43 H 1.09003 * 109.88649 * 120.38861 * 23 8 7 44 44 H 1.08997 * 109.88992 * 241.57990 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9562 0.8123 -0.8019 6 6 4.1191 0.9792 1.3744 7 6 5.5057 1.6692 1.4061 8 7 5.2894 2.9814 0.7602 9 6 6.4807 3.4021 0.0108 10 6 7.5909 3.7310 0.9754 11 8 7.4075 3.6257 2.1696 12 7 8.7874 4.1420 0.5109 13 6 9.0091 4.2687 -0.9317 14 6 9.8665 4.4623 1.4486 15 6 10.6803 3.2233 1.7199 16 1 10.4201 2.2907 1.2415 17 6 11.7572 3.2803 2.5791 18 7 12.4678 2.1991 2.8155 19 14 12.2069 4.8931 3.4073 20 1 11.4859 5.0032 4.7009 21 1 11.8212 6.0257 2.5277 22 1 13.6711 4.9326 3.6518 23 6 4.1157 2.8804 -0.1264 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5140 0.8899 29 1 1.6768 1.9562 0.8901 30 1 1.6767 1.9564 -0.8899 31 1 3.4870 1.3358 2.1875 32 1 4.2213 -0.1054 1.4089 33 1 6.2334 1.0845 0.8432 34 1 5.8396 1.8031 2.4351 35 1 6.2431 4.2840 -0.5841 36 1 6.7993 2.5944 -0.6482 37 1 9.3850 3.3246 -1.3258 38 1 8.0688 4.5189 -1.4231 39 1 9.7381 5.0570 -1.1195 40 1 9.4397 4.8283 2.3825 41 1 10.5075 5.2306 1.0164 42 1 13.2251 2.2391 3.4202 43 1 3.3534 3.5947 0.1847 44 1 4.4116 3.0759 -1.1571 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075011649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:47 Heat of formation + Delta-G solvation = -39.282621 kcal Electronic energy + Delta-G solvation = -20911.965247 eV Core-core repulsion = 17863.965328 eV Total energy + Delta-G solvation = -3047.999918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.68867 -38.33635 -35.35425 -34.71941 -32.57019 -31.79383 -29.42161 -28.82333 -27.01868 -25.81150 -24.82660 -22.26865 -21.87627 -20.70742 -20.22163 -18.46492 -16.93480 -16.53479 -16.10987 -15.42612 -15.13920 -14.88145 -14.81501 -13.93992 -13.71054 -13.66396 -13.26135 -13.09138 -12.85228 -12.47862 -12.34292 -12.24329 -12.10701 -11.91435 -11.62058 -11.60129 -11.49199 -11.12573 -11.00654 -10.86082 -10.68048 -10.60297 -10.49853 -10.46403 -10.10373 -9.52007 -8.92689 -8.56457 -8.09297 -7.63698 -6.06599 -4.04897 3.31254 3.37153 3.39304 3.43409 3.69714 4.27397 4.41826 4.43544 4.58216 4.69706 4.89720 5.00845 5.07914 5.19449 5.28805 5.29877 5.38980 5.43136 5.46456 5.50092 5.54615 5.63076 5.64024 5.68159 5.73380 5.84200 5.90255 5.93780 6.00956 6.05312 6.11383 6.15132 6.31033 6.42389 6.70862 6.95683 7.10652 7.14144 7.40720 7.64271 8.31148 8.50069 8.95767 9.08604 9.54134 11.06943 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036660 B = 0.003555 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.583956 B = 7875.039941 C = 8183.576638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.106 4.106 4 C -0.111 4.111 5 H 0.073 0.927 6 C -0.124 4.124 7 C 0.048 3.952 8 N -0.512 5.512 9 C 0.034 3.966 10 C 0.508 3.492 11 O -0.522 6.522 12 N -0.603 5.603 13 C 0.087 3.913 14 C 0.217 3.783 15 C -0.527 4.527 16 H 0.073 0.927 17 C 0.071 3.929 18 N -0.899 5.899 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.266 1.266 22 H -0.285 1.285 23 C 0.047 3.953 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.036 0.964 41 H 0.029 0.971 42 H 0.264 0.736 43 H 0.078 0.922 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.685 -0.420 -10.078 22.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.144 4.144 4 C -0.131 4.131 5 H 0.092 0.908 6 C -0.162 4.162 7 C -0.080 4.080 8 N -0.236 5.236 9 C -0.097 4.097 10 C 0.293 3.707 11 O -0.397 6.397 12 N -0.336 5.336 13 C -0.057 4.057 14 C 0.096 3.904 15 C -0.565 4.565 16 H 0.091 0.909 17 C -0.131 4.131 18 N -0.538 5.538 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.191 1.191 22 H -0.211 1.211 23 C -0.081 4.081 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.683 -0.142 -8.951 21.623 hybrid contribution 0.727 0.088 -0.353 0.813 sum -18.956 -0.053 -9.304 21.116 Atomic orbital electron populations 1.21778 0.96068 1.01439 1.01717 1.21542 0.95597 0.97046 1.02088 1.21573 0.93995 0.96761 1.02106 1.22439 0.95701 0.96742 0.98170 0.90818 1.22812 0.96652 0.99946 0.96758 1.23087 0.95827 0.87479 1.01574 1.63294 1.02422 1.29235 1.28613 1.22262 0.91086 1.01202 0.95193 1.20167 0.82849 0.78215 0.89425 1.90651 1.81369 1.51413 1.16314 1.47837 1.12634 1.66312 1.06862 1.21625 1.00707 1.01802 0.81609 1.19652 0.84800 0.96834 0.89097 1.21329 1.11693 0.95935 1.27554 0.90932 1.24868 0.95899 0.96422 0.95920 1.69901 1.19251 1.27999 1.36632 0.86830 0.77652 0.84308 0.80770 1.19877 1.19083 1.21116 1.22919 0.93383 0.96404 0.95413 0.92943 0.92754 0.92895 0.92237 0.91823 0.91570 0.92064 0.90644 0.91083 0.93897 0.88797 0.88738 0.92386 0.93017 0.92581 0.91394 0.94560 0.95331 0.92599 0.90409 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.13 -0.96 5.82 -26.73 -0.16 -1.11 16 3 C -0.11 -0.88 4.57 -26.73 -0.12 -1.00 16 4 C -0.11 -1.11 2.92 -88.80 -0.26 -1.37 16 5 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 6 C -0.12 -1.44 5.92 -24.60 -0.15 -1.59 16 7 C 0.05 0.74 5.75 -2.30 -0.01 0.73 16 8 N -0.51 -7.84 4.86 -232.69 -1.13 -8.97 16 9 C 0.03 0.53 3.61 -4.97 -0.02 0.51 16 10 C 0.51 10.66 7.47 -10.99 -0.08 10.58 16 11 O -0.52 -13.20 14.62 5.56 0.08 -13.12 16 12 N -0.60 -12.71 2.86 -182.95 -0.52 -13.23 16 13 C 0.09 1.34 10.29 59.85 0.62 1.96 16 14 C 0.22 5.43 4.27 -5.19 -0.02 5.41 16 15 C -0.53 -15.40 9.94 -34.44 -0.34 -15.75 16 16 H 0.07 2.33 8.06 -52.49 -0.42 1.90 16 17 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 18 N -0.90 -28.09 13.96 55.43 0.77 -27.31 16 19 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 20 H -0.27 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 C 0.05 0.53 6.46 -2.84 -0.02 0.51 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.51 7.68 -51.93 -0.40 0.11 16 29 H 0.07 0.57 8.00 -51.93 -0.42 0.16 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.88 7.94 -51.93 -0.41 0.47 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.04 0.69 7.62 -51.93 -0.40 0.29 16 34 H 0.09 1.74 7.38 -51.93 -0.38 1.36 16 35 H 0.09 1.22 7.29 -51.93 -0.38 0.84 16 36 H 0.06 0.83 7.81 -51.93 -0.41 0.42 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.66 6.44 -51.92 -0.33 0.33 16 39 H 0.07 0.98 7.89 -51.93 -0.41 0.57 16 40 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 41 H 0.03 0.68 6.95 -51.93 -0.36 0.32 16 42 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 43 H 0.08 0.86 7.82 -51.93 -0.41 0.45 16 44 H 0.05 0.52 7.55 -51.93 -0.39 0.13 16 LS Contribution 345.65 15.07 5.21 5.21 Total: -1.00 -34.16 345.65 -8.57 -42.73 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -8.02 Total: -2.77 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -0.29 Total: 0.21 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: -0.88 Total: -49.52 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.08 Total: -13.12 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.16 -8.57 -42.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075011649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.446 kcal (2) G-P(sol) polarization free energy of solvation -34.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds