Wall clock time and date at job start Mon Mar 30 2020 04:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46927 * 2 1 4 4 C 1.53000 * 109.46955 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.76995 * 308.20491 * 4 3 2 6 6 C 1.55144 * 110.70322 * 71.39815 * 4 3 2 7 7 C 1.54909 * 101.65226 * 154.03608 * 6 4 3 8 8 N 1.47842 * 104.79478 * 322.93175 * 7 6 4 9 9 C 1.46904 * 111.00238 * 146.36255 * 8 7 6 10 10 C 1.50705 * 109.46752 * 49.15511 * 9 8 7 11 11 O 1.21279 * 120.00138 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99839 * 180.02562 * 10 9 8 13 13 C 1.46496 * 119.99902 * 359.97438 * 12 10 9 14 14 C 1.46503 * 120.00036 * 180.02562 * 12 10 9 15 15 C 1.50698 * 109.47066 * 89.99768 * 14 12 10 16 16 H 1.07996 * 120.00202 * 359.97438 * 15 14 12 17 17 C 1.37874 * 119.99493 * 180.02562 * 15 14 12 18 18 N 1.31515 * 120.00445 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99901 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46979 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46803 * 119.99792 * 19 17 15 22 22 H 1.48497 * 109.47334 * 239.99527 * 19 17 15 23 23 C 1.47440 * 108.57011 * 24.09510 * 8 7 6 24 24 H 1.09002 * 109.47130 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47518 * 300.00165 * 1 2 3 26 26 H 1.08996 * 109.46996 * 60.00182 * 1 2 3 27 27 H 1.08994 * 109.46728 * 239.99486 * 2 1 3 28 28 H 1.09004 * 109.46410 * 120.00009 * 2 1 3 29 29 H 1.08999 * 109.47143 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47134 * 299.99734 * 3 2 1 31 31 H 1.09002 * 110.99593 * 272.13014 * 6 4 3 32 32 H 1.09000 * 110.99290 * 35.95008 * 6 4 3 33 33 H 1.09004 * 110.37452 * 204.10471 * 7 6 4 34 34 H 1.09002 * 110.46848 * 81.80721 * 7 6 4 35 35 H 1.08998 * 109.47401 * 169.15588 * 9 8 7 36 36 H 1.08999 * 109.46974 * 289.16051 * 9 8 7 37 37 H 1.09006 * 109.46791 * 90.00518 * 13 12 10 38 38 H 1.08995 * 109.47466 * 210.00264 * 13 12 10 39 39 H 1.09003 * 109.47790 * 330.00349 * 13 12 10 40 40 H 1.08994 * 109.46526 * 209.99689 * 14 12 10 41 41 H 1.09003 * 109.46275 * 329.99543 * 14 12 10 42 42 H 0.96998 * 120.00077 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.89463 * 239.60653 * 23 8 7 44 44 H 1.09000 * 109.88994 * 118.41471 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9562 0.8123 0.8018 6 6 4.1191 0.9794 -1.3745 7 6 5.5056 1.6694 -1.4062 8 7 5.2892 2.9815 -0.7603 9 6 6.4806 3.4023 -0.0108 10 6 7.7002 3.2588 -0.8844 11 8 7.5880 2.8470 -2.0196 12 7 8.9157 3.5880 -0.4040 13 6 9.0512 4.0858 0.9671 14 6 10.1012 3.4490 -1.2534 15 6 10.3308 4.7323 -2.0093 16 1 9.6605 5.5677 -1.8712 17 6 11.3961 4.8395 -2.8780 18 7 12.2122 3.8220 -3.0465 19 14 11.6804 6.4300 -3.8156 20 1 10.6300 7.4142 -3.4507 21 1 13.0153 6.9789 -3.4658 22 1 11.6225 6.1615 -5.2749 23 6 4.1156 2.8805 0.1264 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 4.2218 -0.1053 -1.4088 32 1 3.4868 1.3361 -2.1876 33 1 5.8394 1.8034 -2.4352 34 1 6.2349 1.0856 -0.8445 35 1 6.3707 4.4437 0.2915 36 1 6.5924 2.7767 0.8748 37 1 9.2124 3.2467 1.6440 38 1 9.9002 4.7669 1.0241 39 1 8.1417 4.6141 1.2534 40 1 10.9701 3.2330 -0.6318 41 1 9.9481 2.6333 -1.9601 42 1 12.9619 3.8976 -3.6574 43 1 3.3533 3.5948 -0.1846 44 1 4.4116 3.0760 1.1571 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075011651.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:50 Heat of formation + Delta-G solvation = -63.378617 kcal Electronic energy + Delta-G solvation = -20925.547755 eV Core-core repulsion = 17876.502956 eV Total energy + Delta-G solvation = -3049.044799 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.13817 -39.52486 -36.66794 -35.92266 -34.75113 -32.78556 -30.36444 -30.09339 -28.15170 -27.19966 -25.94610 -24.39301 -22.72987 -21.77587 -21.02975 -20.05378 -18.70842 -17.89028 -17.40743 -16.67784 -16.64079 -16.10002 -16.00094 -15.57852 -14.89062 -14.58403 -14.33462 -14.25514 -14.01483 -13.83301 -13.60637 -13.45539 -13.30673 -13.14531 -12.88906 -12.75328 -12.69302 -12.56488 -12.28792 -12.22043 -12.13228 -11.70959 -11.67549 -11.53550 -11.33026 -11.26433 -10.66341 -10.38444 -9.42303 -9.21907 -8.23771 -6.38624 1.35077 1.37866 1.49840 1.83292 2.27000 2.41312 3.05518 3.09066 3.57141 3.71771 3.86318 3.89940 4.21336 4.26887 4.33387 4.36747 4.37808 4.48926 4.50392 4.60670 4.68118 4.71526 4.83531 4.93466 4.93970 4.95306 5.00379 5.05905 5.09501 5.13864 5.20854 5.25887 5.28395 5.40860 5.50024 5.55601 5.56153 5.82526 5.96251 6.05176 6.12639 6.69537 6.79326 7.27716 7.50604 8.83447 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.038709 B = 0.003423 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.180719 B = 8178.811215 C = 8366.646666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.100 4.100 4 C -0.101 4.101 5 H 0.080 0.920 6 C -0.120 4.120 7 C 0.058 3.942 8 N -0.538 5.538 9 C 0.048 3.952 10 C 0.490 3.510 11 O -0.580 6.580 12 N -0.613 5.613 13 C 0.078 3.922 14 C 0.261 3.739 15 C -0.540 4.540 16 H 0.052 0.948 17 C 0.006 3.994 18 N -0.930 5.930 19 Si 0.969 3.031 20 H -0.267 1.267 21 H -0.267 1.267 22 H -0.282 1.282 23 C 0.045 3.955 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.024 0.976 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.023 0.977 41 H -0.004 1.004 42 H 0.267 0.733 43 H 0.084 0.916 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.187 -4.113 12.605 24.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.138 4.138 4 C -0.120 4.120 5 H 0.098 0.902 6 C -0.158 4.158 7 C -0.070 4.070 8 N -0.263 5.263 9 C -0.083 4.083 10 C 0.279 3.721 11 O -0.460 6.460 12 N -0.346 5.346 13 C -0.064 4.064 14 C 0.139 3.861 15 C -0.579 4.579 16 H 0.070 0.930 17 C -0.193 4.193 18 N -0.569 5.569 19 Si 0.793 3.207 20 H -0.192 1.192 21 H -0.192 1.192 22 H -0.208 1.208 23 C -0.082 4.082 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.042 0.958 35 H 0.138 0.862 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.041 0.959 41 H 0.014 0.986 42 H 0.076 0.924 43 H 0.102 0.898 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.147 -3.987 11.581 23.578 hybrid contribution 1.111 -0.009 -0.334 1.160 sum -19.036 -3.996 11.246 22.468 Atomic orbital electron populations 1.21770 0.95391 1.01810 1.01959 1.21533 0.96193 0.96568 1.01940 1.21526 0.92472 0.97284 1.02544 1.22396 0.96844 0.95870 0.96914 0.90153 1.22833 0.94804 1.00148 0.98045 1.22877 0.96613 0.87983 0.99506 1.63393 1.03404 1.29396 1.30084 1.22254 0.87456 1.04131 0.94466 1.21260 0.85317 0.77518 0.88024 1.90631 1.86004 1.47867 1.21481 1.48204 1.07257 1.63741 1.15359 1.21936 1.03940 0.99850 0.80669 1.18728 0.82350 0.95716 0.89296 1.21720 1.11255 0.99565 1.25345 0.93019 1.25881 0.95500 1.00489 0.97427 1.70057 1.16628 1.32461 1.37801 0.85347 0.78421 0.78910 0.78000 1.19169 1.19234 1.20773 1.23049 0.91975 0.97370 0.95774 0.92552 0.92282 0.92901 0.92526 0.91857 0.90709 0.92020 0.90274 0.90947 0.92432 0.95789 0.86203 0.89710 0.91193 0.91487 0.88807 0.95872 0.98595 0.92386 0.89752 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.12 -1.65 5.82 30.60 0.18 -1.47 16 3 C -0.10 -1.42 4.57 30.59 0.14 -1.28 16 4 C -0.10 -1.82 2.92 -9.61 -0.03 -1.85 16 5 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 6 C -0.12 -2.80 5.92 31.98 0.19 -2.61 16 7 C 0.06 1.89 4.95 86.77 0.43 2.32 16 8 N -0.54 -16.25 5.21 -890.09 -4.64 -20.88 16 9 C 0.05 1.41 3.87 85.56 0.33 1.74 16 10 C 0.49 21.11 7.20 87.66 0.63 21.74 16 11 O -0.58 -30.87 13.13 -3.03 -0.04 -30.91 16 12 N -0.61 -26.71 2.86 -851.13 -2.43 -29.14 16 13 C 0.08 2.34 10.24 127.77 1.31 3.65 16 14 C 0.26 14.46 5.16 85.63 0.44 14.90 16 15 C -0.54 -31.98 9.39 25.60 0.24 -31.74 16 16 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 17 C 0.01 0.34 5.46 84.65 0.46 0.80 16 18 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 19 Si 0.97 45.95 29.54 68.60 2.03 47.97 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 22 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 23 C 0.05 0.93 6.47 86.65 0.56 1.49 16 24 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 0.82 7.68 -2.39 -0.02 0.81 16 28 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.95 8.00 -2.39 -0.02 0.93 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 1.70 7.94 -2.39 -0.02 1.68 16 33 H 0.06 2.38 6.71 -2.38 -0.02 2.36 16 34 H 0.02 0.83 7.53 -2.39 -0.02 0.81 16 35 H 0.12 3.02 7.40 -2.39 -0.02 3.00 16 36 H 0.09 2.01 7.92 -2.39 -0.02 1.99 16 37 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 39 H 0.09 2.10 6.44 -2.39 -0.02 2.08 16 40 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 41 H 0.00 -0.26 7.42 -2.39 -0.02 -0.28 16 42 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 43 H 0.08 1.64 7.82 -2.39 -0.02 1.63 16 44 H 0.07 1.21 7.49 -2.39 -0.02 1.20 16 Total: -1.00 -75.15 346.98 1.74 -73.41 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.94 Total: 9.96 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 5.60 Total: 6.64 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -6.78 Total: -107.07 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.04 Total: -30.91 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -75.15 1.74 -73.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075011651.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.035 kcal (2) G-P(sol) polarization free energy of solvation -75.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds