Wall clock time and date at job start Mon Mar 30 2020 05:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47386 * 2 1 4 4 C 1.53002 * 109.46609 * 239.99978 * 2 1 3 5 5 N 1.46500 * 109.47269 * 120.00471 * 2 1 3 6 6 C 1.34771 * 120.00206 * 59.99481 * 5 2 1 7 7 O 1.21283 * 120.00264 * 0.02562 * 6 5 2 8 8 C 1.50696 * 120.00050 * 180.02562 * 6 5 2 9 9 N 1.46501 * 109.47156 * 180.02562 * 8 6 5 10 10 C 1.36937 * 119.99892 * 263.29622 * 9 8 6 11 11 H 1.08001 * 119.99699 * 142.11381 * 10 9 8 12 12 C 1.38808 * 120.00063 * 322.11274 * 10 9 8 13 13 N 1.31623 * 120.00078 * 158.59573 * 12 10 9 14 14 Si 1.86794 * 120.00103 * 338.59450 * 12 10 9 15 15 H 1.48501 * 109.47401 * 96.00567 * 14 12 10 16 16 H 1.48505 * 109.47575 * 216.00499 * 14 12 10 17 17 H 1.48503 * 109.47113 * 336.00382 * 14 12 10 18 18 C 1.46505 * 120.00294 * 83.30152 * 9 8 6 19 19 C 1.54267 * 110.03443 * 122.09137 * 18 9 8 20 20 C 1.54964 * 104.15883 * 95.75565 * 19 18 9 21 21 C 1.54891 * 102.77988 * 37.88622 * 20 19 18 22 22 C 1.53874 * 110.03078 * 239.30897 * 18 9 8 23 23 H 1.08999 * 109.46627 * 300.00022 * 1 2 3 24 24 H 1.09002 * 109.47323 * 59.99393 * 1 2 3 25 25 H 1.08994 * 109.47313 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47065 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.46945 * 300.00295 * 3 2 1 28 28 H 1.08999 * 109.47255 * 60.00363 * 3 2 1 29 29 H 1.09003 * 109.47463 * 299.99872 * 4 2 1 30 30 H 1.08999 * 109.47209 * 60.00019 * 4 2 1 31 31 H 1.09005 * 109.47172 * 180.02562 * 4 2 1 32 32 H 0.97001 * 119.99850 * 239.99180 * 5 2 1 33 33 H 1.08992 * 109.47421 * 60.00018 * 8 6 5 34 34 H 1.09005 * 109.46923 * 299.99769 * 8 6 5 35 35 H 0.97001 * 120.00089 * 180.02562 * 13 12 10 36 36 H 1.09001 * 110.01529 * 0.69813 * 18 9 8 37 37 H 1.09000 * 110.48326 * 214.40100 * 19 18 9 38 38 H 1.08993 * 110.48471 * 337.04543 * 19 18 9 39 39 H 1.09001 * 110.71664 * 279.57338 * 20 19 18 40 40 H 1.09004 * 110.91898 * 156.29558 * 20 19 18 41 41 H 1.08993 * 110.48734 * 203.40760 * 21 20 19 42 42 H 1.09003 * 110.59843 * 80.81618 * 21 20 19 43 43 H 1.09004 * 110.03366 * 359.95018 * 22 18 9 44 44 H 1.08995 * 110.03193 * 121.37427 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 2.0184 -0.6907 1.1961 6 6 1.6927 -1.9810 1.4094 7 8 0.9958 -2.5705 0.6109 8 6 2.1946 -2.6913 2.6400 9 7 1.7069 -4.0727 2.6397 10 6 0.5819 -4.4017 3.3478 11 1 -0.1188 -5.1185 2.9458 12 6 0.3423 -3.8141 4.5823 13 7 -0.8800 -3.7813 5.0694 14 14 1.7545 -3.0699 5.5524 15 1 1.8194 -1.6096 5.2908 16 1 1.5365 -3.3038 7.0026 17 1 3.0305 -3.7048 5.1350 18 6 2.4226 -5.1021 1.8818 19 6 2.8589 -6.2438 2.8230 20 6 1.7374 -7.3035 2.6787 21 6 1.3892 -7.2308 1.1712 22 6 1.4882 -5.7291 0.8322 23 1 -0.3632 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6765 -1.7490 -1.2493 30 1 1.6765 -0.2075 -2.1393 31 1 3.1299 -0.7217 -1.2492 32 1 2.5761 -0.2193 1.8346 33 1 1.8310 -2.1774 3.5298 34 1 3.2847 -2.6912 2.6404 35 1 -1.0475 -3.3703 5.9320 36 1 3.2945 -4.6672 1.3932 37 1 3.8163 -6.6560 2.5044 38 1 2.9188 -5.8884 3.8516 39 1 0.8739 -7.0366 3.2880 40 1 2.1031 -8.2957 2.9433 41 1 0.3773 -7.5956 0.9954 42 1 2.1075 -7.8027 0.5837 43 1 0.5020 -5.2681 0.8873 44 1 1.9067 -5.5984 -0.1657 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078003532.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:11 Heat of formation + Delta-G solvation = -23.438499 kcal Electronic energy + Delta-G solvation = -22419.962225 eV Core-core repulsion = 19372.649360 eV Total energy + Delta-G solvation = -3047.312866 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.47779 -37.78485 -35.92403 -33.91631 -31.71820 -31.23461 -27.77276 -27.58599 -27.24691 -26.98734 -26.31840 -22.72680 -20.77736 -19.77762 -19.09222 -18.83296 -16.99706 -16.16776 -15.48588 -15.36677 -15.03520 -14.35359 -14.12162 -13.74989 -13.57674 -13.33369 -12.95521 -12.72600 -12.43022 -12.27867 -12.17282 -11.85650 -11.79635 -11.41572 -11.23246 -10.96212 -10.87975 -10.75052 -10.70969 -10.32856 -10.24874 -10.19288 -10.05040 -9.81327 -9.77650 -9.38329 -8.85088 -8.50291 -8.44651 -6.76964 -5.95749 -3.36314 3.22660 3.41311 3.45421 3.56043 3.70791 4.50078 4.92840 4.96857 5.08643 5.25271 5.32349 5.50322 5.54261 5.60587 5.71738 5.76129 5.77650 5.89300 5.94562 6.02405 6.06063 6.17249 6.18069 6.21539 6.22713 6.34555 6.43842 6.52708 6.56849 6.58695 6.68888 6.70633 6.77107 6.86923 7.10781 7.15481 7.17652 7.42019 8.02089 8.20159 8.48810 8.96609 9.13925 9.73960 10.13286 11.19858 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016810 B = 0.007825 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.273590 B = 3577.447505 C = 4525.757380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.168 3.832 3 C -0.153 4.153 4 C -0.159 4.159 5 N -0.742 5.742 6 C 0.488 3.512 7 O -0.514 6.514 8 C 0.115 3.885 9 N -0.572 5.572 10 C -0.245 4.245 11 H 0.084 0.916 12 C 0.031 3.969 13 N -0.899 5.899 14 Si 0.866 3.134 15 H -0.289 1.289 16 H -0.300 1.300 17 H -0.265 1.265 18 C 0.180 3.820 19 C -0.129 4.129 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.125 4.125 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.082 0.918 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.391 0.609 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.262 0.738 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.044 0.956 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.082 0.918 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.578 5.459 -8.093 12.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.082 3.918 3 C -0.210 4.210 4 C -0.217 4.217 5 N -0.397 5.397 6 C 0.273 3.727 7 O -0.388 6.388 8 C -0.015 4.015 9 N -0.292 5.292 10 C -0.374 4.374 11 H 0.101 0.899 12 C -0.169 4.169 13 N -0.540 5.540 14 Si 0.696 3.304 15 H -0.217 1.217 16 H -0.228 1.228 17 H -0.190 1.190 18 C 0.073 3.927 19 C -0.168 4.168 20 C -0.154 4.154 21 C -0.158 4.158 22 C -0.164 4.164 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.101 0.899 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.224 0.776 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.101 0.899 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.934 5.000 -8.532 12.678 hybrid contribution 0.909 0.968 0.970 1.644 sum 8.843 5.968 -7.562 13.077 Atomic orbital electron populations 1.22201 0.94608 1.04364 1.00822 1.20204 0.94308 0.91228 0.86085 1.22071 1.01149 0.95315 1.02484 1.22186 1.00332 1.03059 0.96158 1.46554 1.55229 1.13136 1.24818 1.22792 0.80123 0.80705 0.89109 1.90535 1.36045 1.65940 1.46255 1.21408 0.97520 0.88001 0.94613 1.43877 1.30221 0.99674 1.55414 1.18691 0.96868 1.25061 0.96746 0.89880 1.25488 0.95748 0.98729 0.96908 1.69872 1.18617 1.45832 1.19689 0.87080 0.85341 0.78091 0.79873 1.21735 1.22807 1.18970 1.20978 0.92213 0.88695 0.90785 1.22704 0.96352 0.96634 1.01132 1.22448 0.99858 0.96908 0.96205 1.22293 0.99777 0.97149 0.96624 1.22513 1.02425 0.94197 0.97287 0.93007 0.92826 0.89906 0.92348 0.91479 0.92204 0.90143 0.92730 0.93281 0.77634 0.89845 0.91970 0.92846 0.93490 0.93534 0.91194 0.90000 0.93701 0.92882 0.93385 0.89910 0.93947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 8.40 37.16 0.31 -2.18 16 2 C 0.17 2.35 1.06 -131.82 -0.14 2.21 16 3 C -0.15 -1.59 8.59 37.15 0.32 -1.27 16 4 C -0.16 -2.21 8.40 37.16 0.31 -1.90 16 5 N -0.74 -11.61 5.11 -47.61 -0.24 -11.85 16 6 C 0.49 9.68 7.30 -10.99 -0.08 9.60 16 7 O -0.51 -11.64 12.50 5.55 0.07 -11.57 16 8 C 0.12 2.40 4.68 -5.19 -0.02 2.37 16 9 N -0.57 -13.21 1.47 -165.75 -0.24 -13.46 16 10 C -0.24 -6.59 7.73 -15.06 -0.12 -6.71 16 11 H 0.08 2.48 6.81 -52.49 -0.36 2.12 16 12 C 0.03 0.86 5.28 -17.43 -0.09 0.77 16 13 N -0.90 -27.01 13.97 55.49 0.78 -26.24 16 14 Si 0.87 20.98 24.97 -169.99 -4.25 16.73 16 15 H -0.29 -6.70 6.71 56.52 0.38 -6.32 16 16 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 18 C 0.18 3.66 3.39 -66.81 -0.23 3.43 16 19 C -0.13 -2.46 6.10 -25.03 -0.15 -2.61 16 20 C -0.12 -2.17 6.56 -24.70 -0.16 -2.33 16 21 C -0.12 -2.13 6.83 -25.07 -0.17 -2.30 16 22 C -0.13 -2.49 6.09 -25.61 -0.16 -2.65 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.08 1.58 6.17 -51.93 -0.32 1.26 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.37 6.17 -51.93 -0.32 1.05 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.39 5.12 8.47 -40.82 -0.35 4.77 16 33 H 0.08 1.87 3.62 -51.93 -0.19 1.68 16 34 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.05 0.89 7.91 -51.93 -0.41 0.48 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.47 7.97 -51.93 -0.41 1.06 16 39 H 0.08 1.76 6.89 -51.93 -0.36 1.40 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.08 1.95 7.00 -51.93 -0.36 1.58 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 334.45 15.07 5.04 5.04 Total: -1.00 -30.48 334.45 -6.95 -37.43 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -7.73 Total: 7.48 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -0.38 Total: -3.57 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.29 Total: -51.54 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.07 Total: -11.57 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.25 Total: 16.73 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.48 -6.95 -37.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003532.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.991 kcal (2) G-P(sol) polarization free energy of solvation -30.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds