Wall clock time and date at job start Mon Mar 30 2020 05:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47386 * 2 1 4 4 C 1.53002 * 109.46609 * 239.99978 * 2 1 3 5 5 N 1.46500 * 109.47269 * 120.00471 * 2 1 3 6 6 C 1.34771 * 120.00206 * 59.99481 * 5 2 1 7 7 O 1.21283 * 120.00264 * 0.02562 * 6 5 2 8 8 C 1.50696 * 120.00050 * 180.02562 * 6 5 2 9 9 N 1.46501 * 109.47156 * 180.02562 * 8 6 5 10 10 C 1.36937 * 119.99892 * 263.29622 * 9 8 6 11 11 H 1.08001 * 119.99699 * 142.11381 * 10 9 8 12 12 C 1.38808 * 120.00063 * 322.11274 * 10 9 8 13 13 N 1.31623 * 120.00078 * 158.59573 * 12 10 9 14 14 Si 1.86794 * 120.00103 * 338.59450 * 12 10 9 15 15 H 1.48501 * 109.47401 * 96.00567 * 14 12 10 16 16 H 1.48505 * 109.47575 * 216.00499 * 14 12 10 17 17 H 1.48503 * 109.47113 * 336.00382 * 14 12 10 18 18 C 1.46505 * 120.00294 * 83.30152 * 9 8 6 19 19 C 1.54267 * 110.03443 * 122.09137 * 18 9 8 20 20 C 1.54964 * 104.15883 * 95.75565 * 19 18 9 21 21 C 1.54891 * 102.77988 * 37.88622 * 20 19 18 22 22 C 1.53874 * 110.03078 * 239.30897 * 18 9 8 23 23 H 1.08999 * 109.46627 * 300.00022 * 1 2 3 24 24 H 1.09002 * 109.47323 * 59.99393 * 1 2 3 25 25 H 1.08994 * 109.47313 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47065 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.46945 * 300.00295 * 3 2 1 28 28 H 1.08999 * 109.47255 * 60.00363 * 3 2 1 29 29 H 1.09003 * 109.47463 * 299.99872 * 4 2 1 30 30 H 1.08999 * 109.47209 * 60.00019 * 4 2 1 31 31 H 1.09005 * 109.47172 * 180.02562 * 4 2 1 32 32 H 0.97001 * 119.99850 * 239.99180 * 5 2 1 33 33 H 1.08992 * 109.47421 * 60.00018 * 8 6 5 34 34 H 1.09005 * 109.46923 * 299.99769 * 8 6 5 35 35 H 0.97001 * 120.00089 * 180.02562 * 13 12 10 36 36 H 1.09001 * 110.01529 * 0.69813 * 18 9 8 37 37 H 1.09000 * 110.48326 * 214.40100 * 19 18 9 38 38 H 1.08993 * 110.48471 * 337.04543 * 19 18 9 39 39 H 1.09001 * 110.71664 * 279.57338 * 20 19 18 40 40 H 1.09004 * 110.91898 * 156.29558 * 20 19 18 41 41 H 1.08993 * 110.48734 * 203.40760 * 21 20 19 42 42 H 1.09003 * 110.59843 * 80.81618 * 21 20 19 43 43 H 1.09004 * 110.03366 * 359.95018 * 22 18 9 44 44 H 1.08995 * 110.03193 * 121.37427 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 2.0184 -0.6907 1.1961 6 6 1.6927 -1.9810 1.4094 7 8 0.9958 -2.5705 0.6109 8 6 2.1946 -2.6913 2.6400 9 7 1.7069 -4.0727 2.6397 10 6 0.5819 -4.4017 3.3478 11 1 -0.1188 -5.1185 2.9458 12 6 0.3423 -3.8141 4.5823 13 7 -0.8800 -3.7813 5.0694 14 14 1.7545 -3.0699 5.5524 15 1 1.8194 -1.6096 5.2908 16 1 1.5365 -3.3038 7.0026 17 1 3.0305 -3.7048 5.1350 18 6 2.4226 -5.1021 1.8818 19 6 2.8589 -6.2438 2.8230 20 6 1.7374 -7.3035 2.6787 21 6 1.3892 -7.2308 1.1712 22 6 1.4882 -5.7291 0.8322 23 1 -0.3632 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6765 -1.7490 -1.2493 30 1 1.6765 -0.2075 -2.1393 31 1 3.1299 -0.7217 -1.2492 32 1 2.5761 -0.2193 1.8346 33 1 1.8310 -2.1774 3.5298 34 1 3.2847 -2.6912 2.6404 35 1 -1.0475 -3.3703 5.9320 36 1 3.2945 -4.6672 1.3932 37 1 3.8163 -6.6560 2.5044 38 1 2.9188 -5.8884 3.8516 39 1 0.8739 -7.0366 3.2880 40 1 2.1031 -8.2957 2.9433 41 1 0.3773 -7.5956 0.9954 42 1 2.1075 -7.8027 0.5837 43 1 0.5020 -5.2681 0.8873 44 1 1.9067 -5.5984 -0.1657 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078003532.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:11 Heat of formation + Delta-G solvation = -43.346096 kcal Electronic energy + Delta-G solvation = -22420.825484 eV Core-core repulsion = 19372.649360 eV Total energy + Delta-G solvation = -3048.176124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.94428 -39.36672 -37.29040 -35.70265 -33.54421 -32.82364 -29.32100 -29.14518 -28.22422 -28.17794 -28.16204 -24.56907 -22.22460 -21.28744 -20.58424 -20.41658 -18.70251 -17.86623 -17.11758 -16.96459 -16.50648 -15.88630 -15.69412 -15.20571 -15.01280 -14.64274 -14.60171 -14.35254 -14.13310 -13.87405 -13.25414 -13.11590 -12.97695 -12.90873 -12.73853 -12.52587 -12.44488 -12.10547 -11.96962 -11.91096 -11.89259 -11.76942 -11.67766 -11.55996 -11.39011 -11.12495 -10.64605 -10.31404 -9.86602 -8.66328 -8.10322 -5.49091 1.29301 1.45148 1.55725 1.97538 2.37491 2.46903 3.13367 3.37016 3.86392 3.96581 4.02315 4.04868 4.17876 4.26765 4.30272 4.46174 4.52175 4.68184 4.70917 4.73670 4.79241 4.85131 4.87880 4.95167 4.96341 4.99236 5.01354 5.03321 5.16890 5.21957 5.27991 5.30498 5.40507 5.44806 5.55215 5.60520 5.78268 5.85268 6.02310 6.32757 6.80370 7.06287 7.58832 7.73877 8.10380 9.09957 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016810 B = 0.007825 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.273590 B = 3577.447505 C = 4525.757380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.162 3.838 3 C -0.143 4.143 4 C -0.153 4.153 5 N -0.727 5.727 6 C 0.485 3.515 7 O -0.550 6.550 8 C 0.107 3.893 9 N -0.583 5.583 10 C -0.222 4.222 11 H 0.033 0.967 12 C -0.032 4.032 13 N -0.957 5.957 14 Si 0.936 3.064 15 H -0.269 1.269 16 H -0.314 1.314 17 H -0.243 1.243 18 C 0.171 3.829 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.113 4.113 22 C -0.120 4.120 23 H 0.045 0.955 24 H 0.078 0.922 25 H 0.037 0.963 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.407 0.593 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.259 0.741 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.048 0.952 39 H 0.037 0.963 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.084 0.916 43 H 0.032 0.968 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.273 6.910 -9.160 16.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.076 3.924 3 C -0.201 4.201 4 C -0.211 4.211 5 N -0.382 5.382 6 C 0.270 3.730 7 O -0.427 6.427 8 C -0.022 4.022 9 N -0.303 5.303 10 C -0.352 4.352 11 H 0.051 0.949 12 C -0.227 4.227 13 N -0.602 5.602 14 Si 0.764 3.236 15 H -0.196 1.196 16 H -0.243 1.243 17 H -0.167 1.167 18 C 0.066 3.934 19 C -0.162 4.162 20 C -0.154 4.154 21 C -0.150 4.150 22 C -0.159 4.159 23 H 0.064 0.936 24 H 0.097 0.903 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.242 0.758 33 H 0.088 0.912 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.102 0.898 43 H 0.051 0.949 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.688 6.496 -9.629 16.478 hybrid contribution -0.311 0.510 1.150 1.296 sum 11.377 7.006 -8.479 15.824 Atomic orbital electron populations 1.22165 0.96157 1.01636 1.01818 1.20438 0.93191 0.93494 0.85236 1.22008 1.02230 0.92148 1.03678 1.22108 1.01061 1.00981 0.96982 1.46360 1.54417 1.11789 1.25673 1.22482 0.79906 0.82061 0.88543 1.90555 1.37563 1.67159 1.47376 1.21525 0.99589 0.86636 0.94493 1.43928 1.29459 1.01569 1.55383 1.18370 0.96895 1.23108 0.96809 0.94889 1.26125 0.98043 1.00497 0.97990 1.70038 1.21137 1.48818 1.20167 0.85946 0.82303 0.78455 0.76906 1.19589 1.24291 1.16657 1.21218 0.92576 0.88768 0.90876 1.22675 0.98009 0.96024 0.99514 1.22382 0.98388 0.98469 0.96112 1.22266 1.00544 0.95828 0.96405 1.22395 0.99742 0.95569 0.98179 0.93553 0.90309 0.94391 0.90562 0.89651 0.91734 0.93917 0.90616 0.91925 0.75786 0.91242 0.88108 0.93230 0.91199 0.89665 0.93337 0.94400 0.90730 0.93557 0.89792 0.94907 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.84 8.40 71.98 0.60 -4.23 16 2 C 0.16 4.16 1.06 3.60 0.00 4.17 16 3 C -0.14 -2.40 8.59 71.98 0.62 -1.78 16 4 C -0.15 -3.94 8.40 71.98 0.60 -3.33 16 5 N -0.73 -21.27 5.11 -422.94 -2.16 -23.43 16 6 C 0.49 18.98 7.30 87.66 0.64 19.62 16 7 O -0.55 -25.64 12.50 -3.04 -0.04 -25.67 16 8 C 0.11 4.31 4.68 85.63 0.40 4.71 16 9 N -0.58 -27.06 1.47 -678.32 -1.00 -28.06 16 10 C -0.22 -12.53 7.73 84.03 0.65 -11.88 16 11 H 0.03 2.17 6.81 -2.91 -0.02 2.15 16 12 C -0.03 -1.85 5.28 84.86 0.45 -1.40 16 13 N -0.96 -60.71 13.97 21.65 0.30 -60.41 16 14 Si 0.94 43.87 24.97 68.60 1.71 45.59 16 15 H -0.27 -11.60 6.71 99.48 0.67 -10.93 16 16 H -0.31 -15.33 7.11 99.48 0.71 -14.63 16 17 H -0.24 -10.42 7.11 99.48 0.71 -9.71 16 18 C 0.17 6.78 3.39 45.71 0.16 6.94 16 19 C -0.12 -4.45 6.10 31.70 0.19 -4.25 16 20 C -0.12 -4.25 6.56 31.91 0.21 -4.04 16 21 C -0.11 -3.89 6.83 31.67 0.22 -3.68 16 22 C -0.12 -4.81 6.09 31.32 0.19 -4.62 16 23 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.04 1.49 6.17 -2.39 -0.01 1.48 16 26 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.04 1.44 6.17 -2.39 -0.01 1.42 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.41 9.32 8.47 -92.71 -0.79 8.54 16 33 H 0.07 3.00 3.62 -2.39 -0.01 2.99 16 34 H 0.10 3.26 8.07 -2.38 -0.02 3.24 16 35 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 36 H 0.07 2.45 7.91 -2.39 -0.02 2.43 16 37 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.05 1.96 7.97 -2.39 -0.02 1.94 16 39 H 0.04 1.70 6.89 -2.39 -0.02 1.69 16 40 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 41 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.03 1.63 7.00 -2.38 -0.02 1.61 16 44 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -72.49 334.45 3.90 -68.59 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.14 Total: 27.18 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 4.93 Total: -3.78 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -2.85 Total: -111.90 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.04 Total: -25.67 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.71 Total: 45.59 kcal Total: -72.49 3.90 -68.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003532.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.241 kcal (2) G-P(sol) polarization free energy of solvation -72.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds