Wall clock time and date at job start Mon Mar 30 2020 05:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47379 * 2 1 4 4 C 1.53004 * 109.46960 * 120.00262 * 2 1 3 5 5 N 1.46499 * 109.47132 * 64.84694 * 4 2 1 6 6 C 1.46501 * 119.99926 * 84.05351 * 5 4 2 7 7 C 1.50702 * 109.46834 * 83.72954 * 6 5 4 8 8 H 1.07987 * 120.00450 * 359.72353 * 7 6 5 9 9 C 1.37879 * 119.99401 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00200 * 359.72150 * 9 7 6 11 11 Si 1.86806 * 119.99890 * 179.72723 * 9 7 6 12 12 H 1.48500 * 109.46985 * 59.99760 * 11 9 7 13 13 H 1.48497 * 109.46984 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46681 * 299.99904 * 11 9 7 15 15 C 1.34776 * 119.99630 * 264.04990 * 5 4 2 16 16 O 1.21282 * 120.00101 * 3.40269 * 15 5 4 17 17 C 1.50703 * 120.00017 * 183.40316 * 15 5 4 18 18 C 1.53000 * 109.90467 * 72.03392 * 17 15 5 19 19 C 1.53987 * 109.91932 * 193.14198 * 17 15 5 20 20 C 1.54598 * 105.14199 * 120.57498 * 19 17 15 21 21 C 1.54934 * 102.91831 * 21.95926 * 20 19 17 22 22 N 1.47904 * 109.91477 * 310.72941 * 17 15 5 23 23 H 1.08997 * 109.47006 * 301.97557 * 1 2 3 24 24 H 1.09005 * 109.46908 * 61.97226 * 1 2 3 25 25 H 1.08997 * 109.47283 * 181.97122 * 1 2 3 26 26 H 1.09002 * 109.47406 * 240.00235 * 2 1 3 27 27 H 1.09003 * 109.47183 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47178 * 300.00171 * 3 2 1 29 29 H 1.09006 * 109.46650 * 60.00285 * 3 2 1 30 30 H 1.08999 * 109.47278 * 304.84063 * 4 2 1 31 31 H 1.09001 * 109.47316 * 184.84999 * 4 2 1 32 32 H 1.08996 * 109.47299 * 323.72915 * 6 5 4 33 33 H 1.08997 * 109.46771 * 203.72645 * 6 5 4 34 34 H 0.97006 * 119.99975 * 179.97438 * 10 9 7 35 35 H 1.08990 * 109.47112 * 64.84267 * 18 17 15 36 36 H 1.09010 * 109.46736 * 184.84083 * 18 17 15 37 37 H 1.08994 * 109.47281 * 304.83910 * 18 17 15 38 38 H 1.09007 * 110.30789 * 239.49402 * 19 17 15 39 39 H 1.09005 * 110.30955 * 1.56060 * 19 17 15 40 40 H 1.08998 * 110.72352 * 140.31263 * 20 19 17 41 41 H 1.08995 * 110.72852 * 263.41980 * 20 19 17 42 42 H 1.08994 * 110.67331 * 81.02085 * 21 20 19 43 43 H 1.09003 * 110.66338 * 204.15211 * 21 20 19 44 44 H 1.00897 * 111.00107 * 335.83213 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6492 -2.1321 1.1923 6 6 2.4719 -3.0906 0.4502 7 6 3.6060 -3.5613 1.3239 8 1 3.7068 -3.1808 2.3295 9 6 4.5181 -4.4738 0.8375 10 7 4.3951 -4.9375 -0.3870 11 14 5.9283 -5.0515 1.9178 12 1 5.3838 -5.7030 3.1361 13 1 6.7607 -6.0249 1.1664 14 1 6.7610 -3.8860 2.3097 15 6 0.5329 -2.5481 1.8226 16 8 -0.1811 -1.7450 2.3848 17 6 0.1719 -4.0112 1.8287 18 6 1.1255 -4.7792 2.7460 19 6 -1.2793 -4.1915 2.3113 20 6 -2.0092 -4.8930 1.1430 21 6 -0.8494 -5.5556 0.3579 22 7 0.2425 -4.5533 0.4544 23 1 -0.3633 0.5442 0.8717 24 1 -0.3633 0.4829 -0.9072 25 1 -0.3634 -1.0270 0.0353 26 1 1.8934 -0.5138 -0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6075 -0.2601 2.1371 31 1 3.1265 -0.6467 1.2938 32 1 2.8752 -2.6099 -0.4410 33 1 1.8604 -3.9441 0.1575 34 1 5.0370 -5.5792 -0.7294 35 1 0.9881 -4.4454 3.7744 36 1 0.9134 -5.8464 2.6790 37 1 2.1544 -4.5933 2.4381 38 1 -1.3062 -4.8164 3.2041 39 1 -1.7334 -3.2217 2.5153 40 1 -2.7014 -5.6470 1.5178 41 1 -2.5325 -4.1655 0.5226 42 1 -0.5533 -6.4935 0.8275 43 1 -1.1322 -5.7174 -0.6823 44 1 0.1230 -3.8213 -0.2297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079518140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:42 Heat of formation + Delta-G solvation = -33.855384 kcal Electronic energy + Delta-G solvation = -22782.443622 eV Core-core repulsion = 19734.679047 eV Total energy + Delta-G solvation = -3047.764576 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.13637 -37.49953 -35.79111 -34.07995 -32.20785 -30.67529 -29.64699 -27.31298 -26.78084 -26.02078 -25.20374 -22.92565 -21.10785 -20.91676 -19.43845 -18.12183 -16.77316 -16.38210 -15.74594 -14.82317 -14.65954 -14.54431 -14.18216 -13.94702 -13.61448 -13.38504 -12.77351 -12.47007 -12.30613 -12.13994 -11.89605 -11.76005 -11.46096 -11.40173 -11.34361 -11.08909 -10.93561 -10.81432 -10.78608 -10.63291 -10.51656 -10.43510 -10.23551 -10.07641 -9.94890 -9.57445 -8.84127 -8.44743 -7.93460 -7.52888 -6.03783 -4.05502 3.29874 3.32783 3.35093 3.39908 3.97863 4.42028 4.55509 5.05776 5.09972 5.28301 5.29132 5.32185 5.36099 5.41538 5.59156 5.73440 5.81294 5.90746 6.01252 6.03086 6.07125 6.11138 6.18432 6.22134 6.30924 6.36515 6.39122 6.40342 6.46060 6.56014 6.61527 6.67829 6.79020 6.97164 7.10586 7.45135 7.57120 7.61386 7.87711 7.98252 8.27143 8.48458 8.93221 9.08081 9.55007 11.02361 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.012910 B = 0.009511 C = 0.006397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.405839 B = 2943.330645 C = 4376.121278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.121 3.879 5 N -0.582 5.582 6 C 0.194 3.806 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.068 3.932 10 N -0.882 5.882 11 Si 0.887 3.113 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.279 1.279 15 C 0.512 3.488 16 O -0.573 6.573 17 C 0.097 3.903 18 C -0.153 4.153 19 C -0.141 4.141 20 C -0.156 4.156 21 C 0.037 3.963 22 N -0.632 5.632 23 H 0.053 0.947 24 H 0.041 0.959 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.023 0.977 33 H 0.112 0.888 34 H 0.262 0.738 35 H 0.042 0.958 36 H 0.053 0.947 37 H 0.122 0.878 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.254 2.960 0.140 8.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.131 4.131 3 C -0.199 4.199 4 C -0.003 4.003 5 N -0.310 5.310 6 C 0.074 3.926 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.135 4.135 10 N -0.520 5.520 11 Si 0.715 3.285 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.204 1.204 15 C 0.299 3.701 16 O -0.454 6.454 17 C 0.003 3.997 18 C -0.211 4.211 19 C -0.180 4.180 20 C -0.196 4.196 21 C -0.092 4.092 22 N -0.262 5.262 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.041 0.959 33 H 0.129 0.871 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.140 0.860 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.927 2.779 0.368 8.408 hybrid contribution 0.205 0.132 0.533 0.586 sum -7.722 2.912 0.901 8.301 Atomic orbital electron populations 1.21712 0.95225 1.01654 1.00358 1.21483 0.96142 0.95811 0.99657 1.21746 1.00926 0.95999 1.01222 1.21373 0.99818 0.81949 0.97130 1.48242 1.23732 1.08846 1.50227 1.20516 0.91591 0.89499 0.90959 1.21296 1.10481 1.24958 0.99804 0.92639 1.24851 0.97478 0.96188 0.94966 1.69916 1.36321 1.30652 1.15140 0.86740 0.82488 0.78560 0.80711 1.20171 1.21298 1.20442 1.20521 0.81078 0.89975 0.78539 1.90561 1.51949 1.55624 1.47269 1.21703 0.95287 0.91423 0.91243 1.22209 1.04276 0.98528 0.96049 1.22867 0.94814 1.02115 0.98214 1.23113 0.98781 0.99753 0.97916 1.23215 0.89107 0.97174 0.99719 1.63148 1.44162 1.16130 1.02741 0.92814 0.94038 0.93043 0.90984 0.92651 0.93038 0.92961 0.91223 0.90686 0.95890 0.87106 0.92792 0.93925 0.92843 0.86013 0.91269 0.89608 0.91357 0.91967 0.90164 0.91006 0.84501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.20 37.16 0.30 -1.81 16 2 C -0.11 -1.80 3.12 -90.62 -0.28 -2.09 16 3 C -0.14 -1.89 9.19 37.16 0.34 -1.55 16 4 C 0.12 2.27 4.97 -4.04 -0.02 2.25 16 5 N -0.58 -12.02 2.24 -175.06 -0.39 -12.42 16 6 C 0.19 4.49 4.42 -5.19 -0.02 4.47 16 7 C -0.53 -13.41 6.54 -34.44 -0.23 -13.63 16 8 H 0.06 1.45 7.72 -52.49 -0.41 1.04 16 9 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.88 -24.08 13.29 55.43 0.74 -23.35 16 11 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 15 C 0.51 10.48 5.06 -10.98 -0.06 10.43 16 16 O -0.57 -12.48 13.61 5.56 0.08 -12.40 16 17 C 0.10 1.80 0.68 -131.68 -0.09 1.71 16 18 C -0.15 -3.01 8.47 37.16 0.31 -2.69 16 19 C -0.14 -2.27 6.12 -25.38 -0.16 -2.43 16 20 C -0.16 -2.12 7.06 -24.87 -0.18 -2.29 16 21 C 0.04 0.54 7.54 -1.90 -0.01 0.52 16 22 N -0.63 -11.32 4.24 -97.63 -0.41 -11.74 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.91 6.31 -51.93 -0.33 0.58 16 26 H 0.07 1.24 7.98 -51.93 -0.41 0.82 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.33 7.30 -51.93 -0.38 0.96 16 31 H 0.07 1.44 8.12 -51.93 -0.42 1.02 16 32 H 0.02 0.58 7.96 -51.93 -0.41 0.16 16 33 H 0.11 2.59 3.87 -57.92 -0.22 2.37 16 34 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 37 H 0.12 2.78 4.20 -51.93 -0.22 2.56 16 38 H 0.07 1.05 7.69 -51.93 -0.40 0.65 16 39 H 0.09 1.51 6.52 -51.93 -0.34 1.17 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.34 6.04 7.59 -39.29 -0.30 5.74 16 LS Contribution 334.18 15.07 5.04 5.04 Total: -1.00 -27.30 334.18 -7.78 -35.08 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -7.62 Total: 9.67 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -0.18 Total: -5.41 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: -0.07 Total: -47.50 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.30 -7.78 -35.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079518140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.226 kcal (2) G-P(sol) polarization free energy of solvation -27.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds