Wall clock time and date at job start Mon Mar 30 2020 05:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46960 * 2 1 4 4 H 1.09007 * 109.46953 * 305.69932 * 3 2 1 5 5 C 1.50702 * 109.46776 * 185.70048 * 3 2 1 6 6 H 1.07998 * 119.99778 * 274.99807 * 5 3 2 7 7 C 1.37880 * 119.99865 * 95.00755 * 5 3 2 8 8 N 1.31512 * 119.99632 * 184.82858 * 7 5 3 9 9 Si 1.86797 * 120.00274 * 4.82275 * 7 5 3 10 10 H 1.48500 * 109.46882 * 84.86396 * 9 7 5 11 11 H 1.48493 * 109.47307 * 204.86318 * 9 7 5 12 12 H 1.48501 * 109.47349 * 324.86749 * 9 7 5 13 13 N 1.46501 * 109.47295 * 65.69856 * 3 2 1 14 14 C 1.34770 * 119.99829 * 274.99997 * 13 3 2 15 15 O 1.21275 * 120.00622 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99632 * 180.02562 * 14 13 3 17 17 N 1.46900 * 109.47632 * 34.99663 * 16 14 13 18 18 C 1.53007 * 109.46763 * 274.99648 * 16 14 13 19 19 C 1.53005 * 109.46940 * 180.02562 * 18 16 14 20 20 C 1.52999 * 109.46960 * 60.00092 * 19 18 16 21 21 C 1.53004 * 109.47371 * 300.00078 * 20 19 18 22 22 H 1.08996 * 109.46854 * 299.99701 * 21 20 19 23 23 C 1.52995 * 109.47048 * 180.02562 * 21 20 19 24 24 C 1.52998 * 109.47104 * 155.00354 * 16 14 13 25 25 H 1.08991 * 109.47047 * 60.00239 * 1 2 3 26 26 H 1.09000 * 109.46945 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46538 * 300.00027 * 1 2 3 28 28 H 1.08996 * 109.47021 * 240.00081 * 2 1 3 29 29 H 1.09003 * 109.47103 * 120.00212 * 2 1 3 30 30 H 0.97004 * 119.99891 * 179.97438 * 8 7 5 31 31 H 0.96996 * 119.99362 * 95.00107 * 13 3 2 32 32 H 1.00899 * 110.99791 * 300.00461 * 17 16 14 33 33 H 1.00896 * 110.99331 * 63.95250 * 17 16 14 34 34 H 1.09001 * 109.47148 * 60.00302 * 18 16 14 35 35 H 1.08997 * 109.47171 * 299.99879 * 18 16 14 36 36 H 1.08997 * 109.46789 * 300.00386 * 19 18 16 37 37 H 1.09003 * 109.46608 * 179.97438 * 19 18 16 38 38 H 1.08999 * 109.47062 * 179.97438 * 20 19 18 39 39 H 1.09007 * 109.47328 * 59.99971 * 20 19 18 40 40 H 1.09007 * 109.47391 * 299.99733 * 23 21 20 41 41 H 1.08999 * 109.47322 * 59.99758 * 23 21 20 42 42 H 1.09000 * 109.47264 * 179.97438 * 23 21 20 43 43 H 1.08997 * 109.47781 * 59.99538 * 24 16 14 44 44 H 1.09003 * 109.46889 * 299.99001 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5957 1.9849 -0.8346 5 6 3.5404 1.4448 -0.1411 6 1 4.1651 1.3333 0.7327 7 6 4.1155 1.5894 -1.3859 8 7 5.4203 1.4964 -1.5222 9 14 3.0415 1.9171 -2.8787 10 1 2.7751 3.3740 -2.9864 11 1 3.7397 1.4497 -4.1031 12 1 1.7559 1.1883 -2.7332 13 7 1.6669 2.0924 1.2588 14 6 0.4510 2.6587 1.3902 15 8 -0.3341 2.6308 0.4663 16 6 0.0675 3.3278 2.6850 17 7 1.2494 3.9736 3.2715 18 6 -0.4772 2.2804 3.6584 19 6 -0.8672 2.9597 4.9727 20 6 -1.9433 4.0133 4.7025 21 6 -1.3987 5.0606 3.7290 22 1 -0.5221 5.5401 4.1644 23 6 -2.4746 6.1144 3.4594 24 6 -1.0085 4.3816 2.4153 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 5.8249 1.5978 -2.3979 31 1 2.2950 2.1150 1.9976 32 1 1.9749 3.2979 3.4590 33 1 1.5896 4.7138 2.6762 34 1 0.2893 1.5296 3.8505 35 1 -1.3542 1.8013 3.2232 36 1 0.0095 3.4392 5.4079 37 1 -1.2557 2.2136 5.6659 38 1 -2.2215 4.4969 5.6388 39 1 -2.8201 3.5338 4.2671 40 1 -3.3517 5.6352 3.0242 41 1 -2.7521 6.5983 4.3958 42 1 -2.0865 6.8608 2.7663 43 1 -1.8855 3.9024 1.9802 44 1 -0.6205 5.1278 1.7219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080931112.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:10 Heat of formation + Delta-G solvation = -70.640366 kcal Electronic energy + Delta-G solvation = -22201.938927 eV Core-core repulsion = 19152.579234 eV Total energy + Delta-G solvation = -3049.359692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.25847 -37.91961 -35.19072 -34.04674 -32.32110 -31.92853 -31.12015 -28.48175 -27.59421 -26.39977 -23.51680 -22.58824 -21.68890 -20.22236 -19.61630 -18.93448 -17.43032 -16.24799 -15.95427 -15.62072 -15.01001 -14.56707 -14.40384 -14.15745 -13.97171 -13.42633 -13.07128 -12.86329 -12.77301 -12.28392 -12.09621 -11.92638 -11.89531 -11.80070 -11.67180 -11.30902 -10.99595 -10.85609 -10.74158 -10.71154 -10.52197 -10.39461 -10.10285 -9.94248 -9.89049 -9.69550 -9.25030 -8.76447 -8.31335 -8.02449 -6.28644 -4.32512 3.19985 3.23599 3.30157 3.37602 3.85571 4.27857 4.59685 4.75459 4.76571 4.89994 5.09543 5.19576 5.22689 5.38911 5.46901 5.56621 5.64028 5.70417 5.81282 5.85984 5.97747 6.00841 6.03817 6.05260 6.11407 6.19837 6.24439 6.28268 6.36320 6.38737 6.59962 6.62869 6.73762 6.93180 6.96189 7.05179 7.24461 7.32420 7.43339 7.53252 8.08506 8.51390 8.71629 8.93258 9.33617 10.82955 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027139 B = 0.005343 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.476610 B = 5239.046333 C = 5323.175584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.237 3.763 4 H 0.050 0.950 5 C -0.532 4.532 6 H 0.078 0.922 7 C 0.083 3.917 8 N -0.887 5.887 9 Si 0.873 3.127 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.260 1.260 13 N -0.704 5.704 14 C 0.471 3.529 15 O -0.550 6.550 16 C 0.107 3.893 17 N -0.827 5.827 18 C -0.100 4.100 19 C -0.108 4.108 20 C -0.111 4.111 21 C -0.084 4.084 22 H 0.083 0.917 23 C -0.148 4.148 24 C -0.085 4.085 25 H 0.049 0.951 26 H 0.030 0.970 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.268 0.732 31 H 0.388 0.612 32 H 0.342 0.658 33 H 0.346 0.654 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.803 4.637 11.639 17.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.134 3.866 4 H 0.068 0.932 5 C -0.570 4.570 6 H 0.096 0.904 7 C -0.122 4.122 8 N -0.523 5.523 9 Si 0.700 3.300 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.184 1.184 13 N -0.353 5.353 14 C 0.254 3.746 15 O -0.428 6.428 16 C 0.011 3.989 17 N -0.360 5.360 18 C -0.138 4.138 19 C -0.146 4.146 20 C -0.149 4.149 21 C -0.102 4.102 22 H 0.101 0.899 23 C -0.205 4.205 24 C -0.124 4.124 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.221 0.779 32 H 0.156 0.844 33 H 0.160 0.840 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.668 4.798 11.404 17.707 hybrid contribution 0.510 -0.257 -1.501 1.606 sum -12.158 4.542 9.903 16.325 Atomic orbital electron populations 1.21902 0.97428 0.98822 1.02013 1.22066 0.93661 0.99477 1.01160 1.19157 0.95460 0.89090 0.82861 0.93245 1.21002 0.88672 1.51899 0.95431 0.90433 1.24929 0.94853 0.93647 0.98777 1.69881 1.09752 1.48192 1.24524 0.86907 0.81265 0.79568 0.82277 1.19954 1.21156 1.18421 1.46662 1.14690 1.55931 1.18003 1.21644 0.82864 0.79637 0.90441 1.90640 1.50707 1.59788 1.41664 1.21079 0.92680 0.94713 0.90465 1.58956 1.09270 1.16051 1.51674 1.21474 1.00846 0.96262 0.95240 1.21397 0.99406 0.97582 0.96174 1.21563 0.98009 0.96562 0.98727 1.21030 0.98469 0.95391 0.95352 0.89901 1.21850 0.98887 0.98723 1.01087 1.21378 0.97529 0.96524 0.96924 0.93175 0.95107 0.93156 0.92148 0.93088 0.92207 0.77855 0.84443 0.84039 0.91778 0.91389 0.90471 0.92666 0.92435 0.92589 0.93001 0.92991 0.92893 0.90775 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.53 37.16 0.32 -2.57 16 2 C -0.12 -2.69 5.59 -26.73 -0.15 -2.84 16 3 C 0.24 5.49 1.89 -69.08 -0.13 5.36 16 4 H 0.05 1.27 4.73 -51.93 -0.25 1.03 16 5 C -0.53 -14.00 9.05 -34.44 -0.31 -14.31 16 6 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 7 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 8 N -0.89 -25.82 13.96 55.43 0.77 -25.05 16 9 Si 0.87 21.49 26.99 -169.99 -4.59 16.90 16 10 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.26 -6.33 6.82 56.52 0.39 -5.95 16 13 N -0.70 -13.48 4.93 -54.93 -0.27 -13.75 16 14 C 0.47 8.60 5.30 -10.99 -0.06 8.54 16 15 O -0.55 -11.98 13.24 5.56 0.07 -11.90 16 16 C 0.11 1.47 0.77 -132.75 -0.10 1.37 16 17 N -0.83 -9.86 7.22 -0.19 0.00 -9.86 16 18 C -0.10 -1.25 4.87 -26.72 -0.13 -1.38 16 19 C -0.11 -1.13 5.77 -26.73 -0.15 -1.29 16 20 C -0.11 -1.13 5.20 -26.73 -0.14 -1.27 16 21 C -0.08 -0.92 2.56 -90.65 -0.23 -1.15 16 22 H 0.08 0.94 7.60 -51.93 -0.39 0.54 16 23 C -0.15 -1.45 9.19 37.15 0.34 -1.11 16 24 C -0.09 -1.15 3.66 -26.76 -0.10 -1.24 16 25 H 0.05 1.07 7.89 -51.93 -0.41 0.66 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.99 5.63 -51.93 -0.29 0.70 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.39 6.59 6.97 -40.82 -0.28 6.30 16 32 H 0.34 3.90 7.44 -39.29 -0.29 3.61 16 33 H 0.35 4.23 8.98 -39.29 -0.35 3.88 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.83 7.60 -51.93 -0.39 0.43 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 1.09 7.87 -51.93 -0.41 0.68 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 333.99 15.07 5.03 5.03 Total: -1.00 -29.39 333.99 -7.65 -37.04 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -7.72 Total: 11.30 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -0.94 Total: -9.70 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.50 Total: -48.66 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.07 Total: -11.90 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.59 Total: 16.90 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.39 -7.65 -37.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080931112.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.605 kcal (2) G-P(sol) polarization free energy of solvation -29.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds