Wall clock time and date at job start Mon Mar 30 2020 05:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46846 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47372 * 119.99935 * 9 7 5 12 12 H 1.48500 * 109.47110 * 240.00168 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3 17 17 C 1.53002 * 109.46859 * 180.02562 * 16 14 13 18 18 N 1.46902 * 109.47395 * 59.99997 * 17 16 14 19 19 C 1.52998 * 109.46992 * 299.99719 * 17 16 14 20 20 C 1.52999 * 109.46955 * 180.02562 * 19 17 16 21 21 C 1.52992 * 109.47425 * 60.00198 * 20 19 17 22 22 C 1.53008 * 109.46782 * 299.99890 * 21 20 19 23 23 C 1.52995 * 109.47224 * 60.00196 * 22 21 20 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 30 30 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 31 31 H 1.09006 * 109.46537 * 299.99572 * 16 14 13 32 32 H 1.09001 * 109.47335 * 60.00036 * 16 14 13 33 33 H 1.00900 * 110.99691 * 299.99750 * 18 17 16 34 34 H 1.00897 * 110.99757 * 63.94920 * 18 17 16 35 35 H 1.09001 * 109.47094 * 300.00198 * 19 17 16 36 36 H 1.09001 * 109.47407 * 60.00090 * 19 17 16 37 37 H 1.09001 * 109.46937 * 299.99750 * 20 19 17 38 38 H 1.09008 * 109.47062 * 180.02562 * 20 19 17 39 39 H 1.09003 * 109.47435 * 180.02562 * 21 20 19 40 40 H 1.08989 * 109.47648 * 59.99555 * 21 20 19 41 41 H 1.09001 * 109.47109 * 300.00160 * 22 21 20 42 42 H 1.09000 * 109.46775 * 180.02562 * 22 21 20 43 43 H 1.08996 * 109.47379 * 180.02562 * 23 22 21 44 44 H 1.09001 * 109.47107 * 59.99963 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5989 1.5440 0.1931 11 1 6.4001 1.6155 2.6092 12 1 6.4962 -0.5192 1.4627 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 6 -1.3824 3.8947 -2.5209 18 7 -1.4237 4.8715 -1.4245 19 6 -2.3532 2.7507 -2.2217 20 6 -3.7720 3.3075 -2.0885 21 6 -4.1767 3.9908 -3.3962 22 6 -3.2058 5.1348 -3.6954 23 6 -1.7870 4.5780 -3.8287 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8293 -0.0605 2.9503 30 1 2.2720 2.1232 -1.9977 31 1 0.7278 4.1531 -2.8677 32 1 0.0674 2.6131 -3.4685 33 1 -1.1601 4.4440 -0.5493 34 1 -0.8394 5.6684 -1.6281 35 1 -2.3226 2.0259 -3.0353 36 1 -2.0648 2.2636 -1.2902 37 1 -3.8029 4.0324 -1.2750 38 1 -4.4637 2.4925 -1.8748 39 1 -5.1873 4.3879 -3.3011 40 1 -4.1458 3.2660 -4.2095 41 1 -3.2367 5.8597 -2.8820 42 1 -3.4943 5.6219 -4.6269 43 1 -1.0953 5.3931 -4.0414 44 1 -1.7561 3.8531 -4.6422 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084186185.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:55 Heat of formation + Delta-G solvation = -68.517164 kcal Electronic energy + Delta-G solvation = -22003.722629 eV Core-core repulsion = 18954.455005 eV Total energy + Delta-G solvation = -3049.267623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.01608 -38.05544 -35.16190 -33.35063 -32.44708 -31.05174 -30.53251 -29.17525 -27.42711 -26.28183 -23.08856 -22.50348 -21.39573 -20.06126 -19.34318 -18.79069 -17.06522 -15.96833 -15.53128 -15.15085 -15.00833 -14.94639 -14.48683 -14.12155 -13.79253 -13.26918 -12.88114 -12.74557 -12.60187 -12.25718 -11.93335 -11.71106 -11.61009 -11.58555 -11.27114 -11.16005 -10.98460 -10.87118 -10.79490 -10.41505 -10.33270 -10.20868 -10.06961 -9.86076 -9.63260 -9.07223 -8.82611 -8.52095 -8.28249 -7.83391 -6.15802 -4.25369 3.20602 3.28766 3.30895 3.34928 4.06707 4.34925 4.71215 4.88711 4.95936 5.10382 5.15645 5.29824 5.38576 5.40522 5.60509 5.67071 5.76312 5.80525 5.81714 5.85267 5.99127 6.07121 6.24255 6.36816 6.38119 6.41415 6.43405 6.49019 6.62658 6.73760 6.79357 7.02068 7.17117 7.34249 7.41264 7.57811 7.59047 7.69975 7.86262 7.93997 8.15968 8.64017 8.74672 9.11698 9.42498 10.89372 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.038127 B = 0.004435 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.218182 B = 6312.109451 C = 6684.204054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.708 5.708 14 C 0.501 3.499 15 O -0.545 6.545 16 C -0.179 4.179 17 C 0.144 3.856 18 N -0.837 5.837 19 C -0.117 4.117 20 C -0.108 4.108 21 C -0.116 4.116 22 C -0.108 4.108 23 C -0.106 4.106 24 H 0.039 0.961 25 H 0.050 0.950 26 H 0.021 0.979 27 H 0.098 0.902 28 H 0.029 0.971 29 H 0.264 0.736 30 H 0.387 0.613 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.361 0.639 34 H 0.326 0.674 35 H 0.049 0.951 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.056 0.944 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.003 6.149 -11.284 15.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.354 5.354 14 C 0.287 3.713 15 O -0.425 6.425 16 C -0.221 4.221 17 C 0.050 3.950 18 N -0.373 5.373 19 C -0.155 4.155 20 C -0.146 4.146 21 C -0.154 4.154 22 C -0.146 4.146 23 C -0.145 4.145 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.116 0.884 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.219 0.781 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.181 0.819 34 H 0.137 0.863 35 H 0.067 0.933 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.288 6.046 -10.541 15.922 hybrid contribution 2.538 -0.329 -0.323 2.580 sum -7.750 5.716 -10.864 14.518 Atomic orbital electron populations 1.21839 0.98261 0.98018 1.01244 1.21926 0.92686 0.99839 1.02180 1.18772 0.94141 0.89184 0.81084 0.93307 1.21274 0.90825 1.38997 1.06259 0.92176 1.24884 0.98577 0.94786 0.95397 1.69903 1.35027 1.37627 1.09308 0.86419 0.84925 0.77804 0.78111 1.19792 1.20855 1.20854 1.46569 1.14698 1.55712 1.18445 1.20377 0.82594 0.79166 0.89157 1.90519 1.50691 1.60369 1.40885 1.22646 1.00167 1.01628 0.97688 1.20404 0.90935 0.92213 0.91414 1.59033 1.61620 1.10306 1.06292 1.21794 0.94205 0.96109 1.03380 1.21378 0.95889 0.99584 0.97705 1.21509 0.98217 0.97622 0.98008 1.21378 0.94144 0.98166 1.00900 1.21581 0.97194 0.99470 0.96206 0.94180 0.93103 0.95980 0.88366 0.95205 0.92610 0.78101 0.89931 0.89555 0.81877 0.86280 0.93259 0.88573 0.90780 0.93336 0.92868 0.93008 0.90719 0.93315 0.92556 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.52 37.16 0.32 -2.64 16 2 C -0.13 -3.04 5.45 -26.74 -0.15 -3.18 16 3 C 0.27 6.57 2.24 -69.09 -0.15 6.41 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.54 -13.88 8.73 -34.44 -0.30 -14.18 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.38 11.29 55.43 0.63 -23.76 16 9 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.71 -13.89 5.02 -54.94 -0.28 -14.17 16 14 C 0.50 8.99 5.88 -10.98 -0.06 8.93 16 15 O -0.54 -11.09 8.69 5.56 0.05 -11.04 16 16 C -0.18 -2.42 4.94 -27.88 -0.14 -2.56 16 17 C 0.14 1.88 0.54 -131.60 -0.07 1.80 16 18 N -0.84 -11.48 7.31 0.75 0.01 -11.47 16 19 C -0.12 -1.68 4.57 -26.73 -0.12 -1.80 16 20 C -0.11 -1.40 5.77 -26.74 -0.15 -1.55 16 21 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 22 C -0.11 -1.16 5.77 -26.73 -0.15 -1.32 16 23 C -0.11 -1.17 4.85 -26.73 -0.13 -1.30 16 24 H 0.04 0.83 5.65 -51.93 -0.29 0.54 16 25 H 0.05 1.17 7.85 -51.93 -0.41 0.77 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.39 6.76 8.54 -40.82 -0.35 6.41 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.36 5.92 6.32 -39.29 -0.25 5.67 16 34 H 0.33 4.02 8.98 -39.29 -0.35 3.67 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 1.68 5.51 -51.93 -0.29 1.39 16 37 H 0.07 1.05 7.60 -51.93 -0.39 0.65 16 38 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.55 8.14 -51.94 -0.42 0.13 16 41 H 0.07 0.87 7.60 -51.93 -0.39 0.48 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 328.84 15.07 4.96 4.96 Total: -1.00 -27.16 328.84 -8.65 -35.81 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -7.62 Total: 15.45 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -1.37 Total: -11.15 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.36 Total: -49.40 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.05 Total: -11.04 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.16 -8.65 -35.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084186185.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.709 kcal (2) G-P(sol) polarization free energy of solvation -27.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds