Wall clock time and date at job start Mon Mar 30 2020 05:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46846 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47372 * 119.99935 * 9 7 5 12 12 H 1.48500 * 109.47110 * 240.00168 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3 17 17 C 1.53002 * 109.46859 * 180.02562 * 16 14 13 18 18 N 1.46902 * 109.47395 * 59.99997 * 17 16 14 19 19 C 1.52998 * 109.46992 * 299.99719 * 17 16 14 20 20 C 1.52999 * 109.46955 * 180.02562 * 19 17 16 21 21 C 1.52992 * 109.47425 * 60.00198 * 20 19 17 22 22 C 1.53008 * 109.46782 * 299.99890 * 21 20 19 23 23 C 1.52995 * 109.47224 * 60.00196 * 22 21 20 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 30 30 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 31 31 H 1.09006 * 109.46537 * 299.99572 * 16 14 13 32 32 H 1.09001 * 109.47335 * 60.00036 * 16 14 13 33 33 H 1.00900 * 110.99691 * 299.99750 * 18 17 16 34 34 H 1.00897 * 110.99757 * 63.94920 * 18 17 16 35 35 H 1.09001 * 109.47094 * 300.00198 * 19 17 16 36 36 H 1.09001 * 109.47407 * 60.00090 * 19 17 16 37 37 H 1.09001 * 109.46937 * 299.99750 * 20 19 17 38 38 H 1.09008 * 109.47062 * 180.02562 * 20 19 17 39 39 H 1.09003 * 109.47435 * 180.02562 * 21 20 19 40 40 H 1.08989 * 109.47648 * 59.99555 * 21 20 19 41 41 H 1.09001 * 109.47109 * 300.00160 * 22 21 20 42 42 H 1.09000 * 109.46775 * 180.02562 * 22 21 20 43 43 H 1.08996 * 109.47379 * 180.02562 * 23 22 21 44 44 H 1.09001 * 109.47107 * 59.99963 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5989 1.5440 0.1931 11 1 6.4001 1.6155 2.6092 12 1 6.4962 -0.5192 1.4627 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 6 -1.3824 3.8947 -2.5209 18 7 -1.4237 4.8715 -1.4245 19 6 -2.3532 2.7507 -2.2217 20 6 -3.7720 3.3075 -2.0885 21 6 -4.1767 3.9908 -3.3962 22 6 -3.2058 5.1348 -3.6954 23 6 -1.7870 4.5780 -3.8287 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8293 -0.0605 2.9503 30 1 2.2720 2.1232 -1.9977 31 1 0.7278 4.1531 -2.8677 32 1 0.0674 2.6131 -3.4685 33 1 -1.1601 4.4440 -0.5493 34 1 -0.8394 5.6684 -1.6281 35 1 -2.3226 2.0259 -3.0353 36 1 -2.0648 2.2636 -1.2902 37 1 -3.8029 4.0324 -1.2750 38 1 -4.4637 2.4925 -1.8748 39 1 -5.1873 4.3879 -3.3011 40 1 -4.1458 3.2660 -4.2095 41 1 -3.2367 5.8597 -2.8820 42 1 -3.4943 5.6219 -4.6269 43 1 -1.0953 5.3931 -4.0414 44 1 -1.7561 3.8531 -4.6422 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084186185.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:54 Heat of formation + Delta-G solvation = -85.767736 kcal Electronic energy + Delta-G solvation = -22004.470670 eV Core-core repulsion = 18954.455005 eV Total energy + Delta-G solvation = -3050.015664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.31269 -39.32667 -36.88916 -34.43918 -34.29250 -32.83460 -31.50085 -30.39890 -29.00577 -27.67199 -24.96774 -23.48832 -22.66484 -21.58183 -20.97876 -19.79474 -18.79064 -17.46640 -17.19669 -16.49474 -16.37535 -16.11810 -15.96820 -15.40470 -14.94494 -14.60644 -14.33947 -14.15185 -14.12390 -13.61129 -13.33026 -13.16827 -12.90455 -12.84873 -12.74912 -12.67722 -12.63498 -12.30199 -12.14539 -12.01368 -11.75487 -11.57578 -11.35966 -11.16425 -11.01953 -10.85118 -10.56778 -10.16442 -9.58112 -9.34439 -8.17034 -6.34126 1.41950 1.43656 1.54731 1.92200 2.35979 2.72093 3.12538 3.67699 3.86376 3.91061 4.10498 4.24397 4.35513 4.40913 4.49699 4.58162 4.60867 4.69265 4.72071 4.77468 4.81192 4.84213 4.93963 5.05315 5.08377 5.17845 5.27344 5.29481 5.43709 5.45960 5.47518 5.51357 5.56865 5.60461 5.73233 5.75302 5.80878 5.94951 6.18217 6.48205 6.74471 6.79161 7.05514 7.34300 7.67449 8.88041 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.038127 B = 0.004435 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.218182 B = 6312.109451 C = 6684.204054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C 0.280 3.720 4 H -0.001 1.001 5 C -0.548 4.548 6 H 0.069 0.931 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.261 1.261 11 H -0.284 1.284 12 H -0.280 1.280 13 N -0.709 5.709 14 C 0.497 3.503 15 O -0.570 6.570 16 C -0.167 4.167 17 C 0.144 3.856 18 N -0.839 5.839 19 C -0.117 4.117 20 C -0.106 4.106 21 C -0.113 4.113 22 C -0.107 4.107 23 C -0.102 4.102 24 H 0.048 0.952 25 H 0.026 0.974 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.036 0.964 29 H 0.264 0.736 30 H 0.400 0.600 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.345 0.655 34 H 0.334 0.666 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.666 6.909 -13.996 17.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.017 0.983 5 C -0.586 4.586 6 H 0.087 0.913 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.185 1.185 11 H -0.210 1.210 12 H -0.205 1.205 13 N -0.358 5.358 14 C 0.285 3.715 15 O -0.451 6.451 16 C -0.209 4.209 17 C 0.050 3.950 18 N -0.373 5.373 19 C -0.155 4.155 20 C -0.144 4.144 21 C -0.150 4.150 22 C -0.144 4.144 23 C -0.140 4.140 24 H 0.067 0.933 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.234 0.766 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.162 0.838 34 H 0.147 0.853 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.961 6.834 -13.302 17.969 hybrid contribution 2.356 -0.552 0.557 2.483 sum -7.605 6.282 -12.746 16.117 Atomic orbital electron populations 1.21659 0.96748 0.98904 1.00457 1.21775 0.93914 0.99382 1.00933 1.18287 0.93309 0.89034 0.81703 0.98266 1.21632 0.91767 1.38707 1.06505 0.91327 1.25742 1.03099 0.94456 0.95116 1.70054 1.36892 1.38470 1.09848 0.85371 0.79448 0.77786 0.78172 1.18533 1.21030 1.20549 1.46351 1.15888 1.56222 1.17292 1.21203 0.81452 0.78401 0.90493 1.90540 1.51247 1.60888 1.42409 1.22647 1.00773 1.02306 0.95197 1.20486 0.90282 0.91847 0.92349 1.59018 1.61794 1.10678 1.05767 1.21729 0.95318 0.96691 1.01714 1.21335 0.95268 0.99257 0.98519 1.21489 0.98842 0.97853 0.96817 1.21367 0.93932 0.97725 1.01395 1.21566 0.97555 1.00022 0.94816 0.93299 0.95476 0.94143 0.91357 0.94481 0.92689 0.76596 0.87752 0.87413 0.83786 0.85350 0.92485 0.92229 0.92580 0.93445 0.91979 0.92041 0.91964 0.91356 0.91159 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.52 71.98 0.61 -4.70 16 2 C -0.12 -5.89 5.45 30.59 0.17 -5.72 16 3 C 0.28 13.97 2.24 44.24 0.10 14.07 16 4 H 0.00 -0.03 7.58 -2.39 -0.02 -0.05 16 5 C -0.55 -28.58 8.73 25.60 0.22 -28.36 16 6 H 0.07 3.38 7.74 -2.91 -0.02 3.35 16 7 C 0.02 0.85 5.29 84.65 0.45 1.30 16 8 N -0.91 -52.01 11.29 21.45 0.24 -51.77 16 9 Si 0.97 41.82 29.54 68.60 2.03 43.85 16 10 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 13 N -0.71 -27.60 5.02 -446.11 -2.24 -29.84 16 14 C 0.50 17.60 5.88 87.66 0.52 18.11 16 15 O -0.57 -23.84 8.69 -3.03 -0.03 -23.86 16 16 C -0.17 -4.12 4.94 29.85 0.15 -3.97 16 17 C 0.14 3.48 0.54 3.53 0.00 3.48 16 18 N -0.84 -22.42 7.31 -151.56 -1.11 -23.53 16 19 C -0.12 -3.23 4.57 30.59 0.14 -3.09 16 20 C -0.11 -2.67 5.77 30.59 0.18 -2.50 16 21 C -0.11 -2.22 5.92 30.59 0.18 -2.03 16 22 C -0.11 -1.97 5.77 30.60 0.18 -1.79 16 23 C -0.10 -1.87 4.85 30.59 0.15 -1.73 16 24 H 0.05 2.04 5.65 -2.39 -0.01 2.03 16 25 H 0.03 1.29 7.85 -2.39 -0.02 1.27 16 26 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.07 3.76 5.95 -2.39 -0.01 3.75 16 28 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 30 H 0.40 13.40 8.54 -92.71 -0.79 12.61 16 31 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 32 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.34 11.52 6.32 -89.69 -0.57 10.95 16 34 H 0.33 7.79 8.98 -89.70 -0.81 6.99 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 2.11 5.51 -2.39 -0.01 2.10 16 37 H 0.06 1.60 7.60 -2.39 -0.02 1.58 16 38 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.32 7.60 -2.39 -0.02 1.30 16 42 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -60.54 328.84 0.77 -59.77 By element: Atomic # 1 Polarization: 43.48 SS G_CDS: -1.16 Total: 42.32 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 3.04 Total: -16.94 kcal Atomic # 7 Polarization: -102.03 SS G_CDS: -3.11 Total: -105.14 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.03 Total: -23.86 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -60.54 0.77 -59.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084186185.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.995 kcal (2) G-P(sol) polarization free energy of solvation -60.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds