Wall clock time and date at job start Mon Mar 30 2020 05:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47201 * 2 1 4 4 H 1.09001 * 109.47372 * 55.00205 * 3 2 1 5 5 C 1.52997 * 109.46975 * 294.99833 * 3 2 1 6 6 C 1.53006 * 109.47164 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47127 * 59.99836 * 6 5 3 8 8 C 1.53000 * 109.47060 * 300.00449 * 7 6 5 9 9 H 1.09001 * 109.47194 * 299.99650 * 8 7 6 10 10 N 1.46901 * 109.46769 * 180.02562 * 8 7 6 11 11 C 1.46901 * 111.00166 * 85.00156 * 10 8 7 12 12 C 1.50699 * 109.47047 * 180.02562 * 11 10 8 13 13 O 1.21281 * 120.00322 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00040 * 180.02562 * 12 11 10 15 15 C 1.46494 * 120.00109 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.47169 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99728 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99989 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00111 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00153 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46874 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46694 * 119.99898 * 20 18 16 23 23 H 1.48497 * 109.47435 * 240.00230 * 20 18 16 24 24 C 1.52996 * 109.47328 * 60.00126 * 8 7 6 25 25 H 1.09007 * 109.47221 * 300.00499 * 1 2 3 26 26 H 1.08997 * 109.47219 * 59.99756 * 1 2 3 27 27 H 1.09002 * 109.47423 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46646 * 239.99644 * 2 1 3 29 29 H 1.09001 * 109.46843 * 119.99930 * 2 1 3 30 30 H 1.09001 * 109.47375 * 300.00370 * 5 3 2 31 31 H 1.09000 * 109.47140 * 60.00388 * 5 3 2 32 32 H 1.08998 * 109.46505 * 299.99708 * 6 5 3 33 33 H 1.08996 * 109.46884 * 180.02562 * 6 5 3 34 34 H 1.09002 * 109.47153 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 36 36 H 1.00907 * 110.99755 * 208.95149 * 10 8 7 37 37 H 1.09004 * 109.46505 * 299.99418 * 11 10 8 38 38 H 1.08992 * 109.47513 * 59.99779 * 11 10 8 39 39 H 0.97004 * 119.99434 * 359.97438 * 14 12 11 40 40 H 1.09002 * 109.47296 * 299.99547 * 15 14 12 41 41 H 1.09000 * 109.47655 * 59.99292 * 15 14 12 42 42 H 0.97005 * 119.99650 * 179.97438 * 19 18 16 43 43 H 1.08992 * 109.47554 * 59.99639 * 24 8 7 44 44 H 1.09004 * 109.47108 * 179.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1264 -1.3074 6 6 2.1459 3.5688 -1.3077 7 6 3.6707 3.5701 -1.1822 8 6 4.0754 2.8860 0.1252 9 1 3.6411 3.4253 0.9670 10 7 5.5394 2.8878 0.2459 11 6 6.0180 4.1476 0.8305 12 6 7.5207 4.1128 0.9378 13 8 8.1328 3.1346 0.5645 14 7 8.1845 5.1683 1.4495 15 6 9.6452 5.1342 1.5544 16 6 10.1362 6.4267 2.1540 17 1 9.4306 7.1966 2.4290 18 6 11.4861 6.6261 2.3515 19 7 12.3453 5.6886 2.0160 20 14 12.0947 8.2285 3.0941 21 1 10.9364 9.1124 3.3812 22 1 12.8242 7.9437 4.3557 23 1 13.0071 8.9031 2.1361 24 6 3.5649 1.4437 0.1254 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0699 1.5874 -2.1492 31 1 0.5490 2.1252 -1.3969 32 1 1.7115 4.1080 -0.4659 33 1 1.8571 4.0562 -2.2389 34 1 4.0344 4.5976 -1.1820 35 1 4.1049 3.0308 -2.0240 36 1 5.8589 2.0956 0.7830 37 1 5.7188 4.9803 0.1938 38 1 5.5854 4.2752 1.8227 39 1 7.6948 5.9505 1.7484 40 1 9.9445 4.3013 2.1907 41 1 10.0780 5.0069 0.5621 42 1 13.2951 5.8292 2.1546 43 1 3.9991 0.9044 -0.7164 44 1 3.8536 0.9562 1.0566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085065035.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:56 Heat of formation + Delta-G solvation = -75.963055 kcal Electronic energy + Delta-G solvation = -20286.895389 eV Core-core repulsion = 17237.304888 eV Total energy + Delta-G solvation = -3049.590501 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.53180 -38.58117 -35.55223 -34.12082 -33.20841 -32.29857 -30.39710 -28.94712 -27.49345 -25.42007 -23.74552 -22.47917 -22.25327 -20.34723 -20.03077 -19.56462 -17.20117 -16.01018 -15.65208 -15.36884 -15.28658 -15.08493 -14.69654 -14.34487 -14.18914 -13.82890 -13.63491 -13.34151 -12.87581 -12.69799 -12.43619 -12.26066 -11.91575 -11.81219 -11.61087 -11.54862 -11.28944 -11.26126 -10.97271 -10.94798 -10.88578 -10.65807 -10.33192 -10.30808 -10.14696 -9.36777 -8.99330 -8.72728 -8.32191 -7.84135 -6.15801 -4.22602 3.23803 3.30715 3.33838 3.42437 3.80083 4.28827 4.42862 4.45970 4.49490 4.76439 4.90102 4.96767 4.99466 5.18123 5.20225 5.21381 5.28018 5.37231 5.41713 5.45292 5.47955 5.51259 5.60018 5.66210 5.68679 5.74170 5.85339 5.88777 5.94132 6.02751 6.11546 6.14900 6.16045 6.34596 7.02709 7.34251 7.45682 7.48731 7.54151 7.69293 7.98539 8.66133 8.80553 9.14893 9.44247 10.94450 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.049160 B = 0.002707 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.431466 B =10342.251523 C =10567.591490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.084 4.084 4 H 0.068 0.932 5 C -0.115 4.115 6 C -0.119 4.119 7 C -0.108 4.108 8 C 0.089 3.911 9 H 0.041 0.959 10 N -0.669 5.669 11 C 0.041 3.959 12 C 0.496 3.504 13 O -0.544 6.544 14 N -0.715 5.715 15 C 0.250 3.750 16 C -0.542 4.542 17 H 0.063 0.937 18 C 0.062 3.938 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.116 4.116 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.350 0.650 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.389 0.611 40 H 0.026 0.974 41 H 0.027 0.973 42 H 0.265 0.735 43 H 0.073 0.927 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.172 -6.382 -3.761 25.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.103 4.103 4 H 0.086 0.914 5 C -0.152 4.152 6 C -0.157 4.157 7 C -0.147 4.147 8 C -0.020 4.020 9 H 0.059 0.941 10 N -0.302 5.302 11 C -0.092 4.092 12 C 0.280 3.720 13 O -0.422 6.422 14 N -0.365 5.365 15 C 0.129 3.871 16 C -0.580 4.580 17 H 0.081 0.919 18 C -0.141 4.141 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.154 4.154 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.170 0.830 37 H 0.113 0.887 38 H 0.070 0.930 39 H 0.222 0.778 40 H 0.044 0.956 41 H 0.045 0.955 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.375 -6.928 -4.668 24.822 hybrid contribution 0.017 1.192 1.507 1.922 sum -23.357 -5.735 -3.162 24.258 Atomic orbital electron populations 1.21822 0.96018 1.01402 1.01835 1.21568 0.95743 0.96386 1.02083 1.21144 0.95064 0.95853 0.98225 0.91370 1.21645 1.00333 0.95806 0.97459 1.21542 0.95954 0.96639 1.01602 1.21548 0.94559 1.00709 0.97853 1.21529 0.87261 0.96021 0.97229 0.94093 1.60131 1.09082 1.03944 1.57033 1.21880 0.93957 0.94586 0.98763 1.20381 0.89065 0.83903 0.78635 1.90660 1.69471 1.33196 1.48848 1.46450 1.10714 1.17407 1.61884 1.19088 0.73117 0.97394 0.97463 1.21270 0.92552 1.01278 1.42944 0.91873 1.24967 0.96576 0.97199 0.95378 1.69994 1.02508 1.33132 1.46646 0.86359 0.78852 0.82857 0.78822 1.19655 1.20815 1.20782 1.21759 0.95071 0.96057 1.02500 0.92889 0.92499 0.92988 0.91911 0.92049 0.91873 0.91992 0.92287 0.91946 0.92129 0.91132 0.82955 0.88734 0.93005 0.77822 0.95634 0.95545 0.92513 0.90833 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.67 37.16 0.36 -0.61 16 2 C -0.12 -0.86 5.40 -26.73 -0.14 -1.00 16 3 C -0.08 -0.66 2.19 -90.62 -0.20 -0.86 16 4 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 5 C -0.12 -0.88 4.96 -26.73 -0.13 -1.01 16 6 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 7 C -0.11 -1.12 5.43 -26.73 -0.15 -1.26 16 8 C 0.09 0.97 2.49 -67.71 -0.17 0.80 16 9 H 0.04 0.43 7.80 -51.93 -0.40 0.03 16 10 N -0.67 -9.40 5.93 -107.99 -0.64 -10.05 16 11 C 0.04 0.59 5.96 -4.98 -0.03 0.56 16 12 C 0.50 10.04 7.87 -10.98 -0.09 9.96 16 13 O -0.54 -13.35 16.20 5.56 0.09 -13.26 16 14 N -0.72 -15.24 5.55 -61.47 -0.34 -15.58 16 15 C 0.25 6.73 5.43 -5.20 -0.03 6.70 16 16 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 17 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 20 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C -0.12 -1.10 4.47 -26.73 -0.12 -1.22 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.34 6.56 -51.93 -0.34 0.00 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.65 7.45 -51.93 -0.39 0.27 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.35 5.12 8.05 -39.29 -0.32 4.80 16 37 H 0.09 1.24 7.43 -51.93 -0.39 0.86 16 38 H 0.05 0.66 8.05 -51.93 -0.42 0.24 16 39 H 0.39 7.06 8.32 -40.82 -0.34 6.72 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 LS Contribution 348.33 15.07 5.25 5.25 Total: -1.00 -31.65 348.33 -9.16 -40.80 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -7.96 Total: 5.06 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -1.27 Total: -2.59 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.25 Total: -51.21 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.65 -9.16 -40.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085065035.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.159 kcal (2) G-P(sol) polarization free energy of solvation -31.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds