Wall clock time and date at job start Mon Mar 30 2020 05:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46944 * 2 1 4 4 H 1.09000 * 109.47401 * 305.00388 * 3 2 1 5 5 C 1.53004 * 109.47044 * 64.99820 * 3 2 1 6 6 C 1.53006 * 109.47096 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47244 * 300.00260 * 6 5 3 8 8 C 1.53007 * 109.46930 * 59.99903 * 7 6 5 9 9 H 1.08996 * 109.46746 * 180.02562 * 8 7 6 10 10 N 1.46895 * 109.47049 * 59.99718 * 8 7 6 11 11 C 1.46910 * 110.99703 * 85.00060 * 10 8 7 12 12 C 1.50700 * 109.46812 * 180.02562 * 11 10 8 13 13 O 1.21287 * 120.00118 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00000 * 179.97438 * 12 11 10 15 15 C 1.46491 * 120.00091 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.46957 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.53000 * 109.46984 * 184.99889 * 3 2 1 25 25 H 1.09005 * 109.47432 * 299.99946 * 1 2 3 26 26 H 1.08997 * 109.47306 * 60.00216 * 1 2 3 27 27 H 1.09002 * 109.47196 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47334 * 240.00162 * 2 1 3 29 29 H 1.09005 * 109.47055 * 120.00000 * 2 1 3 30 30 H 1.09000 * 109.47082 * 59.99999 * 5 3 2 31 31 H 1.08999 * 109.47170 * 300.00250 * 5 3 2 32 32 H 1.08995 * 109.46860 * 179.97438 * 6 5 3 33 33 H 1.08993 * 109.46563 * 60.00368 * 6 5 3 34 34 H 1.09000 * 109.47154 * 299.99784 * 7 6 5 35 35 H 1.08997 * 109.46865 * 179.97438 * 7 6 5 36 36 H 1.00897 * 111.00017 * 208.95036 * 10 8 7 37 37 H 1.08998 * 109.47017 * 60.00119 * 11 10 8 38 38 H 1.09002 * 109.46670 * 299.99530 * 11 10 8 39 39 H 0.97003 * 119.99349 * 359.97438 * 14 12 11 40 40 H 1.09004 * 109.47166 * 60.00164 * 15 14 12 41 41 H 1.08994 * 109.47507 * 299.99870 * 15 14 12 42 42 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.46906 * 60.00362 * 24 3 2 44 44 H 1.09000 * 109.47154 * 300.00008 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6351 2.1266 1.3074 6 6 2.1456 3.5689 1.3077 7 6 3.6705 3.5703 1.1822 8 6 4.0752 2.8862 -0.1252 9 1 5.1615 2.8868 -0.2143 10 7 3.4899 3.6130 -1.2597 11 6 4.3428 4.7405 -1.6590 12 6 3.7110 5.4608 -2.8223 13 8 2.6546 5.0728 -3.2745 14 7 4.3199 6.5361 -3.3602 15 6 3.7061 7.2360 -4.4913 16 6 4.5803 8.3934 -4.9001 17 1 5.5013 8.5880 -4.3706 18 6 4.2075 9.2003 -5.9543 19 7 3.0862 8.9631 -6.5993 20 14 5.2949 10.6304 -6.4658 21 1 6.4910 10.6817 -5.5873 22 1 5.7242 10.4462 -7.8755 23 1 4.5343 11.8998 -6.3419 24 6 3.5648 1.4444 -0.1257 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.0697 1.5875 2.1492 31 1 0.5488 2.1252 1.3969 32 1 1.8568 4.0563 2.2388 33 1 1.7113 4.1081 0.4659 34 1 4.1048 3.0310 2.0241 35 1 4.0341 4.5978 1.1820 36 1 3.3218 2.9934 -2.0380 37 1 5.3243 4.3678 -1.9517 38 1 4.4505 5.4291 -0.8210 39 1 5.1646 6.8466 -2.9983 40 1 2.7243 7.6083 -4.1988 41 1 3.5987 6.5476 -5.3295 42 1 2.8237 9.5310 -7.3407 43 1 3.8531 0.9571 -1.0571 44 1 3.9994 0.9053 0.7161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085065036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:58 Heat of formation + Delta-G solvation = -73.134414 kcal Electronic energy + Delta-G solvation = -20712.196994 eV Core-core repulsion = 17662.729151 eV Total energy + Delta-G solvation = -3049.467842 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.58475 -38.50077 -35.27310 -34.11090 -32.90085 -32.29018 -30.36884 -28.84749 -27.56512 -25.38721 -23.70807 -22.41019 -22.27474 -20.58292 -19.63055 -19.11377 -17.19222 -16.02828 -15.79232 -15.50609 -15.11048 -14.85793 -14.53211 -14.30305 -14.06261 -13.78616 -13.44885 -13.02112 -12.84146 -12.59324 -12.42196 -12.03130 -11.96655 -11.73687 -11.59879 -11.46400 -11.40806 -11.13796 -10.94193 -10.89374 -10.77204 -10.44926 -10.31171 -10.02804 -9.97212 -9.36860 -8.98289 -8.72718 -8.26836 -7.83782 -6.15984 -4.22710 3.23618 3.30634 3.33700 3.43184 3.86807 4.31705 4.48388 4.62856 4.66587 4.75591 5.04357 5.10939 5.18145 5.20110 5.32369 5.36164 5.40821 5.48909 5.50652 5.55036 5.61452 5.63399 5.68128 5.77586 5.81770 5.87168 5.93524 5.97391 6.10317 6.19834 6.26836 6.35020 6.40509 6.62234 7.03903 7.34356 7.46657 7.49648 7.54175 7.69298 7.98525 8.66441 8.80614 9.15294 9.44181 10.94286 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035889 B = 0.003153 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.006366 B = 8879.701324 C = 9224.325874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.085 4.085 4 H 0.085 0.915 5 C -0.109 4.109 6 C -0.114 4.114 7 C -0.105 4.105 8 C 0.087 3.913 9 H 0.041 0.959 10 N -0.662 5.662 11 C 0.040 3.960 12 C 0.496 3.504 13 O -0.544 6.544 14 N -0.716 5.716 15 C 0.251 3.749 16 C -0.542 4.542 17 H 0.063 0.937 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.903 3.097 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.114 4.114 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.350 0.650 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.389 0.611 40 H 0.026 0.974 41 H 0.025 0.975 42 H 0.265 0.735 43 H 0.060 0.940 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.693 -15.349 16.306 22.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.103 4.103 4 H 0.103 0.897 5 C -0.146 4.146 6 C -0.151 4.151 7 C -0.144 4.144 8 C -0.023 4.023 9 H 0.059 0.941 10 N -0.295 5.295 11 C -0.093 4.093 12 C 0.280 3.720 13 O -0.422 6.422 14 N -0.365 5.365 15 C 0.130 3.870 16 C -0.581 4.581 17 H 0.081 0.919 18 C -0.141 4.141 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.151 4.151 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.170 0.830 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.222 0.778 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.396 -15.164 16.187 22.184 hybrid contribution 1.758 0.562 -0.636 1.952 sum 2.153 -14.601 15.552 21.441 Atomic orbital electron populations 1.21814 0.95995 1.01125 1.02168 1.21585 0.95951 0.96822 1.01391 1.21132 0.94688 0.95241 0.99267 0.89693 1.21559 1.00310 0.95998 0.96735 1.21416 0.95335 0.96574 1.01811 1.21508 0.96935 1.00182 0.95733 1.21523 0.95929 0.92830 0.92047 0.94114 1.60157 1.47038 1.11926 1.10415 1.21889 0.94702 0.95002 0.97680 1.20387 0.85738 0.81613 0.84223 1.90660 1.22404 1.66445 1.62668 1.46450 1.25117 1.29465 1.35438 1.19077 0.94002 0.91060 0.82877 1.21275 1.07509 1.12762 1.16519 0.91892 1.24962 0.95317 0.97887 0.95920 1.69991 1.22017 1.38836 1.21428 0.86365 0.80286 0.81811 0.78465 1.19655 1.20817 1.20781 1.21740 0.96448 0.95273 1.01684 0.92564 0.92513 0.93270 0.92312 0.92543 0.92972 0.92180 0.93137 0.90065 0.92431 0.92271 0.83013 0.93089 0.88780 0.77849 0.95567 0.95663 0.92517 0.92171 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.67 37.16 0.36 -0.96 16 2 C -0.12 -1.04 5.40 -26.73 -0.14 -1.19 16 3 C -0.08 -0.84 2.03 -90.62 -0.18 -1.02 16 4 H 0.08 1.04 7.48 -51.93 -0.39 0.65 16 5 C -0.11 -1.05 4.96 -26.73 -0.13 -1.18 16 6 C -0.11 -1.23 5.77 -26.73 -0.15 -1.39 16 7 C -0.11 -1.07 5.53 -26.73 -0.15 -1.22 16 8 C 0.09 0.91 2.82 -67.73 -0.19 0.72 16 9 H 0.04 0.41 7.80 -51.93 -0.41 0.00 16 10 N -0.66 -8.85 4.45 -108.01 -0.48 -9.33 16 11 C 0.04 0.56 5.97 -4.97 -0.03 0.54 16 12 C 0.50 9.86 7.87 -10.98 -0.09 9.78 16 13 O -0.54 -13.10 16.20 5.55 0.09 -13.01 16 14 N -0.72 -15.08 5.55 -61.48 -0.34 -15.43 16 15 C 0.25 6.70 5.43 -5.20 -0.03 6.67 16 16 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 17 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 20 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C -0.11 -1.06 4.58 -26.75 -0.12 -1.18 16 25 H 0.06 0.47 6.57 -51.93 -0.34 0.13 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.58 6.56 -51.93 -0.34 0.24 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 1.10 7.60 -51.93 -0.39 0.70 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 36 H 0.35 4.95 7.89 -39.29 -0.31 4.64 16 37 H 0.05 0.63 8.06 -51.93 -0.42 0.21 16 38 H 0.09 1.21 7.43 -51.93 -0.39 0.82 16 39 H 0.39 7.01 8.32 -40.82 -0.34 6.67 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 345.71 15.07 5.21 5.21 Total: -1.00 -31.12 345.71 -8.98 -40.09 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -7.89 Total: 5.97 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -1.28 Total: -3.90 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.09 Total: -50.27 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.09 Total: -13.01 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.12 -8.98 -40.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085065036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.040 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds