Wall clock time and date at job start Mon Mar 30 2020 05:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47110 * 2 1 4 4 H 1.08993 * 109.47271 * 54.99752 * 3 2 1 5 5 C 1.53007 * 109.46812 * 294.99700 * 3 2 1 6 6 C 1.52997 * 109.46812 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47180 * 60.00426 * 6 5 3 8 8 C 1.52998 * 109.46806 * 299.99423 * 7 6 5 9 9 H 1.09002 * 109.46948 * 179.97438 * 8 7 6 10 10 N 1.46898 * 109.47420 * 300.00382 * 8 7 6 11 11 C 1.46906 * 110.99888 * 274.99818 * 10 8 7 12 12 C 1.50699 * 109.47140 * 180.02562 * 11 10 8 13 13 O 1.21282 * 120.00040 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99614 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99746 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47324 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99822 * 0.02562 * 16 15 14 18 18 C 1.37884 * 120.00126 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99707 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 119.99956 * 0.27447 * 18 16 15 21 21 H 1.48503 * 109.47407 * 269.72718 * 20 18 16 22 22 H 1.48505 * 109.47281 * 29.72474 * 20 18 16 23 23 H 1.48501 * 109.47274 * 149.72572 * 20 18 16 24 24 C 1.53001 * 109.47100 * 60.00468 * 8 7 6 25 25 H 1.08994 * 109.47401 * 299.99974 * 1 2 3 26 26 H 1.08999 * 109.47325 * 60.00501 * 1 2 3 27 27 H 1.09006 * 109.47416 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47009 * 239.99730 * 2 1 3 29 29 H 1.08998 * 109.47017 * 119.99950 * 2 1 3 30 30 H 1.09002 * 109.47043 * 60.00482 * 5 3 2 31 31 H 1.08993 * 109.47245 * 300.00069 * 5 3 2 32 32 H 1.08997 * 109.47715 * 300.00269 * 6 5 3 33 33 H 1.08997 * 109.47137 * 179.97438 * 6 5 3 34 34 H 1.08996 * 109.46996 * 180.02562 * 7 6 5 35 35 H 1.08993 * 109.47324 * 59.99658 * 7 6 5 36 36 H 1.00894 * 111.00288 * 38.95567 * 10 8 7 37 37 H 1.08996 * 109.47194 * 59.99783 * 11 10 8 38 38 H 1.09000 * 109.47033 * 300.00113 * 11 10 8 39 39 H 0.96996 * 120.00269 * 0.02562 * 14 12 11 40 40 H 1.08996 * 109.47197 * 59.99909 * 15 14 12 41 41 H 1.09004 * 109.46923 * 300.00605 * 15 14 12 42 42 H 0.97005 * 119.99656 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.47666 * 59.99430 * 24 8 7 44 44 H 1.08997 * 109.47456 * 179.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3075 6 6 2.1458 3.5687 -1.3077 7 6 3.6707 3.5700 -1.1824 8 6 4.0754 2.8861 0.1251 9 1 5.1617 2.8866 0.2142 10 7 3.4901 3.6129 1.2595 11 6 4.3430 4.7404 1.6589 12 6 3.7120 5.4600 2.8229 13 8 2.6560 5.0716 3.2757 14 7 4.3217 6.5345 3.3615 15 6 3.7085 7.2338 4.4935 16 6 4.5834 8.3904 4.9030 17 1 5.5038 8.5855 4.3729 18 6 4.2087 9.1997 5.9546 19 7 4.9720 10.2094 6.3117 20 14 2.6205 8.8577 6.8765 21 1 1.5067 9.6038 6.2376 22 1 2.3283 7.4023 6.8364 23 1 2.7636 9.2952 8.2884 24 6 3.5649 1.4438 0.1254 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.5489 2.1252 -1.3970 31 1 2.0699 1.5874 -2.1492 32 1 1.7116 4.1081 -0.4660 33 1 1.8579 4.0559 -2.2393 34 1 4.0343 4.5975 -1.1821 35 1 4.1049 3.0307 -2.0241 36 1 2.5549 3.9251 1.0453 37 1 4.4509 5.4290 0.8209 38 1 5.3246 4.3676 1.9515 39 1 5.1664 6.8449 2.9996 40 1 3.6010 6.5447 5.3311 41 1 2.7268 7.6067 4.2015 42 1 4.7082 10.7790 7.0513 43 1 3.9991 0.9044 -0.7164 44 1 3.8536 0.9563 1.0566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085065038.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:01 Heat of formation + Delta-G solvation = -68.509712 kcal Electronic energy + Delta-G solvation = -20790.997622 eV Core-core repulsion = 17741.730322 eV Total energy + Delta-G solvation = -3049.267300 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.84747 -38.66396 -35.39055 -34.23605 -32.85257 -32.32485 -30.51259 -29.01159 -28.08793 -25.49271 -23.85307 -22.58776 -21.89915 -20.81137 -19.84655 -19.10144 -17.38012 -16.36622 -15.82302 -15.49035 -15.31528 -14.97534 -14.59251 -14.37923 -14.16675 -13.72060 -13.60023 -13.26786 -12.86316 -12.75807 -12.57953 -12.33470 -12.06596 -12.01578 -11.81488 -11.63502 -11.51178 -11.18614 -11.00912 -10.97656 -10.75213 -10.48214 -10.23028 -10.03817 -9.96209 -9.48986 -9.16417 -8.77205 -8.33732 -8.10593 -6.21243 -4.23354 3.25665 3.29019 3.33989 3.43232 3.77190 4.33913 4.43470 4.51679 4.52744 4.66219 4.91312 4.94010 5.08075 5.14117 5.19904 5.26830 5.32250 5.37214 5.38223 5.46623 5.49715 5.55755 5.56429 5.65627 5.75009 5.80375 5.86577 5.90704 5.98455 6.04764 6.07254 6.17874 6.28820 6.42338 6.79817 7.01311 7.08967 7.25901 7.39894 7.44863 8.15490 8.53721 8.76114 8.97402 9.39236 10.90740 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030527 B = 0.003439 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.990773 B = 8140.453737 C = 8614.282766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.090 4.090 4 H 0.081 0.919 5 C -0.114 4.114 6 C -0.123 4.123 7 C -0.151 4.151 8 C 0.087 3.913 9 H 0.077 0.923 10 N -0.665 5.665 11 C 0.039 3.961 12 C 0.498 3.502 13 O -0.547 6.547 14 N -0.708 5.708 15 C 0.221 3.779 16 C -0.543 4.543 17 H 0.079 0.921 18 C 0.077 3.923 19 N -0.893 5.893 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.260 1.260 23 H -0.283 1.283 24 C -0.099 4.099 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.351 0.649 37 H 0.054 0.946 38 H 0.097 0.903 39 H 0.396 0.604 40 H 0.025 0.975 41 H 0.019 0.981 42 H 0.267 0.733 43 H 0.060 0.940 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.455 -17.590 -17.108 24.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.109 4.109 4 H 0.099 0.901 5 C -0.151 4.151 6 C -0.161 4.161 7 C -0.190 4.190 8 C -0.024 4.024 9 H 0.095 0.905 10 N -0.300 5.300 11 C -0.094 4.094 12 C 0.282 3.718 13 O -0.425 6.425 14 N -0.357 5.357 15 C 0.099 3.901 16 C -0.581 4.581 17 H 0.097 0.903 18 C -0.127 4.127 19 N -0.530 5.530 20 Si 0.703 3.297 21 H -0.199 1.199 22 H -0.185 1.185 23 H -0.209 1.209 24 C -0.137 4.137 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.173 0.827 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.229 0.771 40 H 0.043 0.957 41 H 0.037 0.963 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.947 -18.116 -16.137 24.580 hybrid contribution -0.421 0.894 -0.363 1.053 sum -4.368 -17.222 -16.500 24.247 Atomic orbital electron populations 1.21826 0.96129 1.01217 1.02001 1.21544 0.95752 0.96612 1.01611 1.21184 0.95746 0.95730 0.98193 0.90065 1.21630 1.00528 0.95287 0.97653 1.21545 0.95542 0.97259 1.01767 1.22221 0.96571 1.01011 0.99242 1.21586 0.98767 0.94079 0.87924 0.90463 1.60333 1.05882 1.26076 1.37682 1.21862 0.98200 0.93037 0.96270 1.20455 0.85683 0.80942 0.84670 1.90649 1.22890 1.66048 1.62884 1.46168 1.25404 1.29255 1.34904 1.19467 0.94184 0.92163 0.84266 1.21103 1.08537 1.11175 1.17313 0.90283 1.24804 0.97088 0.94392 0.96383 1.69885 1.37777 1.16927 1.28455 0.86809 0.83653 0.79889 0.79301 1.19883 1.18453 1.20887 1.21547 0.95265 0.95166 1.01706 0.92565 0.92689 0.93180 0.92477 0.92012 0.91918 0.92306 0.91838 0.92004 0.92123 0.91455 0.82653 0.92794 0.88498 0.77108 0.95714 0.96288 0.92271 0.92137 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.67 37.16 0.36 -0.89 16 2 C -0.12 -0.99 5.40 -26.73 -0.14 -1.13 16 3 C -0.09 -0.84 1.95 -90.62 -0.18 -1.02 16 4 H 0.08 0.95 7.21 -51.93 -0.37 0.57 16 5 C -0.11 -0.96 4.96 -26.73 -0.13 -1.10 16 6 C -0.12 -1.12 5.67 -26.73 -0.15 -1.27 16 7 C -0.15 -1.35 5.52 -26.73 -0.15 -1.50 16 8 C 0.09 0.87 2.85 -67.71 -0.19 0.68 16 9 H 0.08 0.74 7.80 -51.93 -0.41 0.33 16 10 N -0.67 -8.73 5.39 -107.99 -0.58 -9.31 16 11 C 0.04 0.53 5.97 -4.97 -0.03 0.50 16 12 C 0.50 9.49 7.87 -10.99 -0.09 9.40 16 13 O -0.55 -12.54 16.20 5.56 0.09 -12.45 16 14 N -0.71 -14.36 5.55 -61.47 -0.34 -14.70 16 15 C 0.22 5.50 4.50 -5.20 -0.02 5.48 16 16 C -0.54 -15.00 9.83 -34.44 -0.34 -15.34 16 17 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 18 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 19 N -0.89 -26.65 13.96 55.43 0.77 -25.87 16 20 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.26 -6.41 6.53 56.52 0.37 -6.04 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C -0.10 -0.92 4.92 -26.73 -0.13 -1.06 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.42 6.57 -51.93 -0.34 0.08 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.52 6.57 -51.93 -0.34 0.18 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.67 6.26 -51.93 -0.32 0.34 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.56 7.45 -51.93 -0.39 0.17 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.35 4.89 5.27 -39.30 -0.21 4.69 16 37 H 0.05 0.64 7.43 -51.93 -0.39 0.25 16 38 H 0.10 1.18 8.06 -51.93 -0.42 0.76 16 39 H 0.40 7.01 8.32 -40.82 -0.34 6.67 16 40 H 0.02 0.65 7.18 -51.93 -0.37 0.28 16 41 H 0.02 0.49 7.58 -51.93 -0.39 0.10 16 42 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 339.00 15.07 5.11 5.11 Total: -1.00 -31.38 339.00 -8.59 -39.97 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -7.67 Total: 5.46 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -1.29 Total: -5.16 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.15 Total: -49.89 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.38 -8.59 -39.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085065038.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.541 kcal (2) G-P(sol) polarization free energy of solvation -31.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds