Wall clock time and date at job start Mon Mar 30 2020 05:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46923 * 2 1 4 4 H 1.09008 * 109.46800 * 304.99494 * 3 2 1 5 5 C 1.52999 * 109.47386 * 64.99550 * 3 2 1 6 6 C 1.53004 * 109.47154 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47118 * 300.00248 * 6 5 3 8 8 C 1.52999 * 109.47311 * 59.99848 * 7 6 5 9 9 H 1.08999 * 109.47146 * 59.99962 * 8 7 6 10 10 N 1.46903 * 109.47145 * 180.02562 * 8 7 6 11 11 C 1.46898 * 110.99865 * 275.00085 * 10 8 7 12 12 C 1.50706 * 109.46930 * 180.02562 * 11 10 8 13 13 O 1.21284 * 120.00101 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99833 * 179.97438 * 12 11 10 15 15 C 1.46506 * 119.99731 * 179.97438 * 14 12 11 16 16 C 1.50698 * 109.47006 * 179.97438 * 15 14 12 17 17 H 1.08005 * 119.99819 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00046 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00192 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47261 * 60.00310 * 20 18 16 23 23 H 1.48500 * 109.47454 * 300.00304 * 20 18 16 24 24 C 1.52998 * 109.47180 * 184.99979 * 3 2 1 25 25 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47574 * 300.00094 * 1 2 3 27 27 H 1.08996 * 109.47263 * 60.00542 * 1 2 3 28 28 H 1.08996 * 109.47661 * 239.99392 * 2 1 3 29 29 H 1.09005 * 109.47108 * 119.99528 * 2 1 3 30 30 H 1.08999 * 109.47146 * 60.00387 * 5 3 2 31 31 H 1.09004 * 109.47532 * 299.99948 * 5 3 2 32 32 H 1.09003 * 109.47417 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.46957 * 60.00052 * 6 5 3 34 34 H 1.09008 * 109.46858 * 299.99803 * 7 6 5 35 35 H 1.08998 * 109.47290 * 180.02562 * 7 6 5 36 36 H 1.00904 * 110.99892 * 151.04198 * 10 8 7 37 37 H 1.08998 * 109.47306 * 60.00564 * 11 10 8 38 38 H 1.08993 * 109.47084 * 299.99556 * 11 10 8 39 39 H 0.96989 * 120.00264 * 359.97438 * 14 12 11 40 40 H 1.09001 * 109.47068 * 60.00448 * 15 14 12 41 41 H 1.08993 * 109.47068 * 299.99902 * 15 14 12 42 42 H 0.97001 * 119.99934 * 359.97438 * 19 18 16 43 43 H 1.08994 * 109.47402 * 59.99483 * 24 3 2 44 44 H 1.08999 * 109.47046 * 299.99426 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6351 2.1266 1.3073 6 6 2.1446 3.5693 1.3069 7 6 3.6693 3.5718 1.1809 8 6 4.0742 2.8876 -0.1263 9 1 3.6392 3.4263 -0.9682 10 7 5.5382 2.8894 -0.2470 11 6 6.0167 4.1493 -0.8315 12 6 7.5195 4.1140 -0.9400 13 8 8.1316 3.1358 -0.5666 14 7 8.1831 5.1694 -1.4519 15 6 9.6440 5.1352 -1.5568 16 6 10.1348 6.4271 -2.1577 17 1 9.4291 7.1968 -2.4336 18 6 11.4847 6.6269 -2.3545 19 7 12.3441 5.6899 -2.0182 20 14 12.0931 8.2285 -3.0988 21 1 13.5740 8.1940 -3.2052 22 1 11.6851 9.3635 -2.2324 23 1 11.5041 8.4014 -4.4509 24 6 3.5648 1.4444 -0.1257 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 2.0697 1.5877 2.1491 31 1 0.5488 2.1253 1.3968 32 1 1.8558 4.0569 2.2381 33 1 1.7096 4.1080 0.4651 34 1 4.1043 3.0330 2.0229 35 1 4.0323 4.5995 1.1812 36 1 5.8578 2.0972 -0.7840 37 1 5.7176 4.9820 -0.1950 38 1 5.5842 4.2768 -1.8238 39 1 7.6936 5.9515 -1.7509 40 1 9.9432 4.3022 -2.1930 41 1 10.0766 5.0082 -0.5645 42 1 12.0282 4.8583 -1.6314 43 1 3.8532 0.9570 -1.0570 44 1 3.9994 0.9055 0.7162 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085065040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:04 Heat of formation + Delta-G solvation = -79.783039 kcal Electronic energy + Delta-G solvation = -20322.238736 eV Core-core repulsion = 17272.482587 eV Total energy + Delta-G solvation = -3049.756148 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.58591 -38.69462 -35.61962 -34.36924 -33.25282 -32.41415 -30.43087 -28.96461 -27.21988 -25.24848 -23.74553 -22.53757 -22.41575 -20.39264 -20.08506 -19.65686 -17.51483 -16.37675 -15.69606 -15.54960 -15.27244 -15.10439 -14.51282 -14.26491 -14.11952 -13.75572 -13.67213 -13.43907 -12.95126 -12.79027 -12.50818 -12.33657 -12.17219 -11.86499 -11.71338 -11.58913 -11.33878 -11.29976 -11.02059 -10.99964 -10.77922 -10.69254 -10.36471 -10.18423 -10.16317 -9.17792 -8.78406 -8.68500 -8.38915 -7.98729 -6.51742 -4.25291 3.30070 3.37212 3.39306 3.58225 3.71600 4.29624 4.40778 4.44310 4.47286 4.72495 4.86620 4.93399 4.95988 5.14748 5.17953 5.23336 5.27060 5.33694 5.36178 5.39659 5.43268 5.44778 5.56057 5.57457 5.65807 5.71407 5.82450 5.85346 5.90602 5.99353 6.07822 6.11666 6.12287 6.30745 6.92086 7.05419 7.22648 7.32970 7.40344 7.66655 8.26559 8.47459 8.71597 9.00271 9.48662 10.88409 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.049024 B = 0.002716 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.006422 B =10308.597601 C =10534.364628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.084 4.084 4 H 0.068 0.932 5 C -0.115 4.115 6 C -0.119 4.119 7 C -0.109 4.109 8 C 0.089 3.911 9 H 0.042 0.958 10 N -0.669 5.669 11 C 0.042 3.958 12 C 0.497 3.503 13 O -0.545 6.545 14 N -0.710 5.710 15 C 0.241 3.759 16 C -0.623 4.623 17 H 0.057 0.943 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 1.076 2.924 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.287 1.287 24 C -0.116 4.116 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.350 0.650 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.392 0.608 40 H 0.016 0.984 41 H 0.017 0.983 42 H 0.273 0.727 43 H 0.061 0.939 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.776 -6.290 3.779 25.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.103 4.103 4 H 0.086 0.914 5 C -0.152 4.152 6 C -0.157 4.157 7 C -0.147 4.147 8 C -0.020 4.020 9 H 0.060 0.940 10 N -0.302 5.302 11 C -0.091 4.091 12 C 0.281 3.719 13 O -0.423 6.423 14 N -0.359 5.359 15 C 0.119 3.881 16 C -0.662 4.662 17 H 0.075 0.925 18 C -0.184 4.184 19 N -0.536 5.536 20 Si 0.903 3.097 21 H -0.205 1.205 22 H -0.213 1.213 23 H -0.213 1.213 24 C -0.154 4.154 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.170 0.830 37 H 0.114 0.886 38 H 0.071 0.929 39 H 0.225 0.775 40 H 0.034 0.966 41 H 0.035 0.965 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.805 -5.986 4.221 23.952 hybrid contribution -1.878 -0.477 -0.628 2.037 sum -24.683 -6.462 3.593 25.767 Atomic orbital electron populations 1.21820 0.95986 1.01424 1.01844 1.21568 0.95772 0.96353 1.02084 1.21146 0.95017 0.95888 0.98242 0.91361 1.21645 1.00372 0.95776 0.97451 1.21543 0.95895 0.96662 1.01635 1.21548 0.94628 1.00683 0.97819 1.21545 0.87139 0.96082 0.97273 0.94045 1.60131 1.09206 1.03862 1.57002 1.21862 0.93644 0.94713 0.98872 1.20445 0.89238 0.83784 0.78448 1.90656 1.69527 1.33210 1.48881 1.46268 1.10154 1.17573 1.61953 1.19146 0.74677 0.97733 0.96502 1.22065 0.95302 1.01776 1.47025 0.92509 1.25891 0.92823 1.04086 0.95618 1.70757 1.37320 1.07148 1.38384 0.83444 0.76415 0.73798 0.76010 1.20549 1.21270 1.21308 1.21768 0.95130 0.95988 1.02495 0.92969 0.92494 0.92874 0.92049 0.91909 0.91861 0.91955 0.91912 0.92269 0.91131 0.92151 0.82958 0.88628 0.92914 0.77536 0.96646 0.96546 0.91688 0.92077 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.67 37.16 0.36 -0.60 16 2 C -0.12 -0.85 5.40 -26.73 -0.14 -1.00 16 3 C -0.08 -0.65 2.19 -90.62 -0.20 -0.85 16 4 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 5 C -0.12 -0.87 4.96 -26.73 -0.13 -1.00 16 6 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 7 C -0.11 -1.11 5.42 -26.73 -0.15 -1.26 16 8 C 0.09 0.96 2.50 -67.69 -0.17 0.79 16 9 H 0.04 0.44 7.80 -51.93 -0.41 0.03 16 10 N -0.67 -9.35 5.93 -107.96 -0.64 -9.99 16 11 C 0.04 0.61 5.97 -4.97 -0.03 0.58 16 12 C 0.50 10.04 7.87 -10.98 -0.09 9.95 16 13 O -0.54 -13.26 16.20 5.55 0.09 -13.17 16 14 N -0.71 -15.25 5.55 -61.47 -0.34 -15.59 16 15 C 0.24 6.46 4.74 -5.19 -0.02 6.43 16 16 C -0.62 -17.32 9.28 -34.44 -0.32 -17.64 16 17 H 0.06 1.49 7.60 -52.48 -0.40 1.09 16 18 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 19 N -0.90 -27.56 13.65 55.43 0.76 -26.80 16 20 Si 1.08 24.53 29.90 -169.99 -5.08 19.45 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 24 C -0.12 -1.09 4.48 -26.71 -0.12 -1.21 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.34 6.57 -51.93 -0.34 0.00 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.42 6.57 -51.93 -0.34 0.08 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 35 H 0.06 0.65 7.46 -51.93 -0.39 0.26 16 36 H 0.35 5.08 8.04 -39.29 -0.32 4.77 16 37 H 0.10 1.26 7.44 -51.93 -0.39 0.87 16 38 H 0.05 0.67 8.06 -51.93 -0.42 0.25 16 39 H 0.39 7.25 8.32 -40.82 -0.34 6.91 16 40 H 0.02 0.45 8.01 -51.93 -0.42 0.04 16 41 H 0.02 0.49 8.01 -51.93 -0.42 0.07 16 42 H 0.27 8.45 7.22 -40.82 -0.29 8.16 16 43 H 0.06 0.57 8.12 -51.93 -0.42 0.14 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 347.02 15.07 5.23 5.23 Total: -1.00 -32.23 347.02 -9.16 -41.39 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.90 Total: 5.88 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -1.27 Total: -6.40 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -0.22 Total: -52.38 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.09 Total: -13.17 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -5.08 Total: 19.45 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.23 -9.16 -41.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085065040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.391 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds