Wall clock time and date at job start Mon Mar 30 2020 05:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46984 * 2 1 4 4 C 1.52996 * 109.46987 * 120.00264 * 2 1 3 5 5 N 1.46500 * 109.47063 * 174.14885 * 4 2 1 6 6 C 1.46499 * 120.00320 * 275.72326 * 5 4 2 7 7 C 1.50696 * 109.47612 * 266.43853 * 6 5 4 8 8 H 1.08000 * 119.99511 * 359.97438 * 7 6 5 9 9 C 1.37868 * 120.00495 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99749 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00507 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47077 * 59.99725 * 11 9 7 13 13 H 1.48499 * 109.47519 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46976 * 300.00273 * 11 9 7 15 15 C 1.34779 * 120.00004 * 95.72184 * 5 4 2 16 16 O 1.21278 * 119.99915 * 3.55551 * 15 5 4 17 17 C 1.50692 * 120.00084 * 183.55182 * 15 5 4 18 18 H 1.09003 * 110.54457 * 309.51761 * 17 15 5 19 19 C 1.54889 * 110.48832 * 72.13581 * 17 15 5 20 20 C 1.54883 * 102.75289 * 156.62054 * 19 17 15 21 21 C 1.54272 * 104.19493 * 322.05450 * 20 19 17 22 22 C 1.53877 * 106.59412 * 23.61253 * 21 20 19 23 23 H 1.09007 * 110.02633 * 240.66150 * 22 21 20 24 24 N 1.46897 * 110.03208 * 119.28709 * 22 21 20 25 25 H 1.08998 * 109.47027 * 299.99601 * 1 2 3 26 26 H 1.08997 * 109.47421 * 59.99724 * 1 2 3 27 27 H 1.09007 * 109.47037 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46580 * 240.00414 * 2 1 3 29 29 H 1.09003 * 109.46964 * 185.50027 * 3 2 1 30 30 H 1.08999 * 109.47317 * 305.51073 * 3 2 1 31 31 H 1.09000 * 109.46825 * 65.50915 * 3 2 1 32 32 H 1.09002 * 109.47596 * 54.15422 * 4 2 1 33 33 H 1.08999 * 109.47256 * 294.15220 * 4 2 1 34 34 H 1.09002 * 109.46827 * 26.44074 * 6 5 4 35 35 H 1.09000 * 109.47347 * 146.43466 * 6 5 4 36 36 H 0.97004 * 120.00056 * 180.02562 * 10 9 7 37 37 H 1.09005 * 110.75648 * 38.30377 * 19 17 15 38 38 H 1.09000 * 110.91275 * 275.00840 * 19 17 15 39 39 H 1.09003 * 110.49121 * 203.37836 * 20 19 17 40 40 H 1.08999 * 110.48833 * 80.73529 * 20 19 17 41 41 H 1.09003 * 110.03412 * 264.32633 * 21 20 19 42 42 H 1.09000 * 110.03042 * 142.89332 * 21 20 19 43 43 H 1.00906 * 111.00169 * 61.44716 * 24 22 21 44 44 H 1.00895 * 111.00558 * 185.40758 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4982 -0.8444 1.1809 6 6 4.1058 -1.9555 0.4443 7 6 4.3832 -3.0942 1.3915 8 1 4.1324 -2.9997 2.4377 9 6 4.9582 -4.2564 0.9228 10 7 5.2641 -4.3713 -0.3512 11 14 5.3027 -5.6677 2.0970 12 1 4.0299 -6.1205 2.7137 13 1 5.9185 -6.7939 1.3503 14 1 6.2329 -5.2108 3.1606 15 6 4.2808 0.0645 1.7957 16 8 3.7789 0.9471 2.4590 17 6 5.7793 -0.0161 1.6590 18 1 6.1306 -1.0226 1.8861 19 6 6.2169 0.4020 0.2332 20 6 7.6863 0.8447 0.4426 21 6 7.6743 1.5622 1.8083 22 6 6.4618 1.0148 2.5816 23 1 5.7703 1.8249 2.8136 24 7 6.9075 0.3639 3.8208 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1256 1.4440 -0.0985 30 1 1.5983 1.9840 -0.8365 31 1 1.7594 1.9270 0.9352 32 1 1.5937 -1.7143 1.3031 33 1 1.7647 -0.1506 2.1361 34 1 3.4229 -2.2904 -0.3365 35 1 5.0402 -1.6235 -0.0083 36 1 5.6683 -5.1891 -0.6811 37 1 5.6110 1.2327 -0.1288 38 1 6.1621 -0.4424 -0.4538 39 1 7.9941 1.5312 -0.3462 40 1 8.3455 -0.0228 0.4732 41 1 7.5708 2.6377 1.6642 42 1 8.5934 1.3447 2.3524 43 1 7.3765 1.0210 4.4260 44 1 6.1344 -0.0772 4.2959 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085369201.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:29 Heat of formation + Delta-G solvation = -64.449419 kcal Electronic energy + Delta-G solvation = -22305.132874 eV Core-core repulsion = 19256.041641 eV Total energy + Delta-G solvation = -3049.091233 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.75244 -37.35874 -35.70620 -34.10364 -32.39051 -32.12226 -29.07574 -27.39583 -26.80413 -26.16925 -25.27566 -23.01251 -20.96284 -20.14811 -19.34644 -17.99004 -16.84578 -16.39738 -15.61541 -15.27421 -14.93322 -14.54767 -14.41354 -14.12534 -13.90208 -13.49813 -13.20473 -12.66940 -12.41643 -12.14126 -11.92928 -11.70300 -11.55807 -11.35961 -11.25574 -10.95091 -10.87522 -10.83883 -10.73205 -10.54415 -10.45591 -10.38770 -10.29110 -10.20171 -10.01554 -9.66017 -8.92458 -8.50823 -8.25632 -7.63164 -6.14785 -4.21480 3.27737 3.32063 3.34706 3.46723 3.97572 4.37421 4.86077 4.90326 5.07649 5.18499 5.25740 5.29979 5.33267 5.44734 5.66525 5.79866 5.85573 5.90089 5.98354 6.00811 6.01878 6.05576 6.15663 6.23113 6.23910 6.28598 6.33815 6.37266 6.40777 6.48249 6.55655 6.64680 6.74603 6.80902 6.87242 7.28116 7.54240 7.61051 7.76795 7.80649 8.10601 8.40436 8.83179 9.08742 9.46191 10.91680 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.011151 B = 0.009312 C = 0.006056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.297247 B = 3006.286035 C = 4622.251601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C -0.134 4.134 4 C 0.122 3.878 5 N -0.591 5.591 6 C 0.232 3.768 7 C -0.536 4.536 8 H 0.058 0.942 9 C 0.067 3.933 10 N -0.891 5.891 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.525 3.475 16 O -0.580 6.580 17 C -0.104 4.104 18 H 0.122 0.878 19 C -0.111 4.111 20 C -0.117 4.117 21 C -0.118 4.118 22 C 0.096 3.904 23 H 0.055 0.945 24 N -0.842 5.842 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.033 0.967 35 H 0.047 0.953 36 H 0.265 0.735 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.333 0.667 44 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.599 9.418 0.568 9.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.192 4.192 4 C -0.002 4.002 5 N -0.320 5.320 6 C 0.112 3.888 7 C -0.575 4.575 8 H 0.077 0.923 9 C -0.136 4.136 10 N -0.530 5.530 11 Si 0.722 3.278 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.199 1.199 15 C 0.313 3.687 16 O -0.462 6.462 17 C -0.125 4.125 18 H 0.140 0.860 19 C -0.149 4.149 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.016 4.016 23 H 0.073 0.927 24 N -0.371 5.371 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.144 0.856 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.338 9.258 0.273 9.269 hybrid contribution -0.453 -0.435 1.004 1.185 sum -0.791 8.823 1.277 8.950 Atomic orbital electron populations 1.21750 0.95310 1.01557 1.01287 1.21501 0.95241 0.96835 0.99611 1.21729 1.00927 0.95651 1.00880 1.21366 0.81358 1.00245 0.97242 1.48147 1.05302 1.26814 1.51719 1.19564 0.94410 0.82997 0.91794 1.21444 1.41368 0.99261 0.95393 0.92331 1.24905 0.95169 0.98392 0.95169 1.69910 1.42125 1.27732 1.13192 0.86601 0.78678 0.81501 0.80985 1.20285 1.21202 1.19938 1.20372 0.89281 0.80696 0.78312 1.90542 1.76164 1.36881 1.42617 1.22102 0.91699 1.02669 0.96058 0.85999 1.22469 0.95668 1.01174 0.95571 1.22280 0.96966 1.00025 0.96240 1.22195 0.98333 0.98729 0.96310 1.21880 0.94723 0.94916 0.90037 0.92727 1.58897 1.33485 1.36362 1.08348 0.92911 0.92985 0.92656 0.91049 0.93093 0.93850 0.92605 0.90938 0.90875 0.94882 0.93575 0.92540 0.92065 0.89651 0.92026 0.91097 0.92412 0.91160 0.85578 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.19 37.16 0.34 -1.51 16 2 C -0.11 -1.80 3.12 -90.62 -0.28 -2.08 16 3 C -0.13 -2.13 8.15 37.15 0.30 -1.83 16 4 C 0.12 2.26 4.94 -4.04 -0.02 2.24 16 5 N -0.59 -12.30 2.29 -175.07 -0.40 -12.70 16 6 C 0.23 5.44 4.85 -5.20 -0.03 5.41 16 7 C -0.54 -13.92 8.87 -34.45 -0.31 -14.23 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -24.40 13.29 55.43 0.74 -23.67 16 11 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 15 C 0.52 10.80 5.66 -10.99 -0.06 10.74 16 16 O -0.58 -12.64 14.20 5.56 0.08 -12.56 16 17 C -0.10 -1.96 1.96 -90.12 -0.18 -2.13 16 18 H 0.12 2.65 7.22 -51.93 -0.38 2.27 16 19 C -0.11 -1.87 5.79 -24.74 -0.14 -2.01 16 20 C -0.12 -1.69 6.83 -25.07 -0.17 -1.87 16 21 C -0.12 -1.66 6.58 -25.61 -0.17 -1.83 16 22 C 0.10 1.59 3.46 -66.60 -0.23 1.35 16 23 H 0.05 0.98 6.77 -51.93 -0.35 0.63 16 24 N -0.84 -13.05 9.10 -3.72 -0.03 -13.08 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 0.89 7.02 -51.93 -0.36 0.53 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.92 8.12 -51.93 -0.42 0.50 16 32 H 0.07 1.36 8.11 -51.93 -0.42 0.94 16 33 H 0.07 1.39 7.22 -51.93 -0.37 1.02 16 34 H 0.03 0.82 8.04 -51.93 -0.42 0.40 16 35 H 0.05 1.10 4.56 -51.93 -0.24 0.87 16 36 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.06 1.00 8.05 -51.93 -0.42 0.58 16 38 H 0.09 1.55 6.18 -51.93 -0.32 1.23 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.95 7.92 -51.93 -0.41 0.53 16 43 H 0.33 4.26 9.06 -39.29 -0.36 3.90 16 44 H 0.34 5.57 9.02 -39.29 -0.35 5.21 16 LS Contribution 343.15 15.07 5.17 5.17 Total: -1.00 -27.73 343.15 -8.26 -35.99 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -7.75 Total: 11.16 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -1.04 Total: -6.08 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.30 Total: -49.44 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.08 Total: -12.56 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.73 -8.26 -35.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085369201.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.463 kcal (2) G-P(sol) polarization free energy of solvation -27.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds