Wall clock time and date at job start Mon Mar 30 2020 05:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47245 * 2 1 4 4 C 1.53003 * 109.47053 * 120.00054 * 2 1 3 5 5 N 1.46498 * 109.46824 * 174.43449 * 4 2 1 6 6 C 1.46501 * 120.00525 * 276.37760 * 5 4 2 7 7 C 1.50697 * 109.47089 * 270.00846 * 6 5 4 8 8 H 1.07997 * 120.00276 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99948 * 179.97438 * 7 6 5 10 10 N 1.31520 * 120.00032 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99957 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.46884 * 89.99985 * 11 9 7 13 13 H 1.48496 * 109.47130 * 209.99680 * 11 9 7 14 14 H 1.48497 * 109.46995 * 330.00015 * 11 9 7 15 15 C 1.34777 * 119.99878 * 96.38117 * 5 4 2 16 16 O 1.21286 * 120.00083 * 175.28505 * 15 5 4 17 17 C 1.50699 * 120.00195 * 355.56450 * 15 5 4 18 18 H 1.08997 * 110.01380 * 3.10474 * 17 15 5 19 19 C 1.54271 * 110.03553 * 124.49942 * 17 15 5 20 20 C 1.54887 * 104.19441 * 142.89718 * 19 17 15 21 21 C 1.54886 * 102.74869 * 322.05265 * 20 19 17 22 22 C 1.53876 * 110.03131 * 241.66743 * 17 15 5 23 23 H 1.09003 * 110.03234 * 121.42988 * 22 17 15 24 24 N 1.46897 * 110.03540 * 359.97438 * 22 17 15 25 25 H 1.08996 * 109.46822 * 300.00252 * 1 2 3 26 26 H 1.09002 * 109.46962 * 60.00167 * 1 2 3 27 27 H 1.08999 * 109.47135 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47286 * 239.99717 * 2 1 3 29 29 H 1.09000 * 109.47161 * 305.10476 * 3 2 1 30 30 H 1.08995 * 109.47418 * 65.10577 * 3 2 1 31 31 H 1.09003 * 109.47560 * 185.10729 * 3 2 1 32 32 H 1.08992 * 109.47140 * 54.43431 * 4 2 1 33 33 H 1.09000 * 109.46859 * 294.42990 * 4 2 1 34 34 H 1.09005 * 109.46549 * 30.00303 * 6 5 4 35 35 H 1.08999 * 109.47304 * 150.00196 * 6 5 4 36 36 H 0.97001 * 119.99463 * 179.97438 * 10 9 7 37 37 H 1.09004 * 110.48253 * 261.57819 * 19 17 15 38 38 H 1.09003 * 110.48490 * 24.21473 * 19 17 15 39 39 H 1.08998 * 110.75863 * 80.37626 * 20 19 17 40 40 H 1.09005 * 110.75075 * 203.56069 * 20 19 17 41 41 H 1.09008 * 110.48190 * 156.62245 * 21 20 19 42 42 H 1.08994 * 110.49237 * 279.26460 * 21 20 19 43 43 H 1.00895 * 111.00323 * 170.21911 * 24 22 17 44 44 H 1.00900 * 110.99859 * 294.17651 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.4988 -0.8383 1.1841 6 6 4.1129 -1.9375 0.4351 7 6 4.3109 -3.1192 1.3491 8 1 4.0100 -3.0575 2.3845 9 6 4.8764 -4.2791 0.8636 10 7 5.0498 -5.3103 1.6614 11 14 5.3964 -4.3862 -0.9274 12 1 6.8056 -3.9372 -1.0613 13 1 5.2779 -5.7909 -1.3941 14 1 4.5191 -3.5154 -1.7503 15 6 4.2761 0.0652 1.8133 16 8 5.4802 -0.0789 1.8317 17 6 3.6487 1.2512 2.4995 18 1 2.5625 1.1885 2.4338 19 6 4.0869 1.2993 3.9778 20 6 4.2534 2.8102 4.2756 21 6 4.8635 3.3527 2.9594 22 6 4.1425 2.5568 1.8519 23 1 3.2958 3.1287 1.4720 24 7 5.0775 2.2547 0.7599 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6039 1.9820 -0.8407 30 1 1.7533 1.9292 0.9321 31 1 3.1262 1.4439 -0.0915 32 1 1.5976 -1.7161 1.3005 33 1 1.7603 -0.1531 2.1364 34 1 3.4615 -2.2225 -0.3912 35 1 5.0776 -1.6157 0.0430 36 1 5.4473 -6.1264 1.3196 37 1 3.3179 0.8668 4.6179 38 1 5.0343 0.7772 4.1121 39 1 3.2870 3.2738 4.4734 40 1 4.9337 2.9661 5.1130 41 1 4.6612 4.4189 2.8563 42 1 5.9363 3.1624 2.9291 43 1 5.2871 3.0833 0.2237 44 1 5.9215 1.8298 1.1138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085369203.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:35 Heat of formation + Delta-G solvation = -43.232794 kcal Electronic energy + Delta-G solvation = -22543.801319 eV Core-core repulsion = 19495.630108 eV Total energy + Delta-G solvation = -3048.171211 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.09657 -37.31462 -36.12242 -33.53678 -32.48721 -32.10981 -29.66478 -27.73057 -26.97087 -26.16871 -25.39207 -22.70461 -20.81913 -20.52690 -19.80593 -17.80533 -17.19693 -16.78911 -15.97175 -15.41773 -14.74436 -14.50675 -14.26999 -14.23057 -13.82377 -13.28591 -13.20478 -12.70313 -12.62058 -12.48122 -12.13158 -11.96560 -11.70887 -11.58342 -11.38802 -11.14289 -11.01354 -10.86665 -10.78624 -10.71140 -10.64059 -10.48478 -10.38039 -10.08066 -10.01924 -9.43385 -8.68608 -8.51124 -8.42383 -7.49404 -6.01299 -3.98489 3.34530 3.40493 3.42814 3.56553 3.99811 4.46571 4.53763 4.71321 4.75931 5.06290 5.10982 5.20240 5.24753 5.33020 5.41991 5.51388 5.55535 5.62101 5.65473 5.71555 5.76474 5.81036 5.87535 5.93849 6.01259 6.05232 6.12541 6.19077 6.25261 6.31095 6.36949 6.45801 6.63117 6.74074 6.85870 7.09559 7.36396 7.55223 7.72113 7.75015 8.48439 8.57919 9.02710 9.23592 9.60540 11.12376 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017780 B = 0.007014 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.381822 B = 3990.777159 C = 4691.419588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.162 4.162 4 C 0.115 3.885 5 N -0.589 5.589 6 C 0.220 3.780 7 C -0.523 4.523 8 H 0.073 0.927 9 C 0.070 3.930 10 N -0.901 5.901 11 Si 0.876 3.124 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.266 1.266 15 C 0.543 3.457 16 O -0.544 6.544 17 C -0.120 4.120 18 H 0.094 0.906 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.158 4.158 22 C 0.106 3.894 23 H 0.084 0.916 24 N -0.841 5.841 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.025 0.975 35 H 0.035 0.965 36 H 0.263 0.737 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.331 0.669 44 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.256 17.707 -0.071 19.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.136 4.136 3 C -0.219 4.219 4 C -0.009 4.009 5 N -0.319 5.319 6 C 0.099 3.901 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.131 4.131 10 N -0.540 5.540 11 Si 0.703 3.297 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.191 1.191 15 C 0.330 3.670 16 O -0.422 6.422 17 C -0.142 4.142 18 H 0.112 0.888 19 C -0.154 4.154 20 C -0.157 4.157 21 C -0.198 4.198 22 C -0.007 4.007 23 H 0.102 0.898 24 N -0.375 5.375 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.143 0.857 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.090 16.902 -0.357 18.333 hybrid contribution 0.758 0.379 -0.409 0.942 sum -6.332 17.281 -0.766 18.421 Atomic orbital electron populations 1.21782 0.95412 1.01668 1.01247 1.21558 0.95068 0.97144 0.99801 1.22284 1.04303 0.95140 1.00186 1.21576 0.81715 1.00979 0.96627 1.47784 1.05149 1.27391 1.51565 1.19548 0.93773 0.84947 0.91793 1.21374 1.40720 0.95851 0.98175 0.90911 1.24857 0.95160 0.95552 0.97551 1.69910 1.44761 1.03871 1.35440 0.86855 0.79857 0.77233 0.85770 1.20032 1.21237 1.19059 1.19728 0.86908 0.82066 0.78287 1.90543 1.14817 1.76230 1.60575 1.22294 1.01600 0.94479 0.95784 0.88804 1.22372 1.02628 0.96477 0.93886 1.22394 1.00497 0.95662 0.97126 1.23257 1.00552 0.99471 0.96499 1.21935 0.95631 0.93084 0.90008 0.89795 1.58991 1.21081 1.31862 1.25539 0.92966 0.92984 0.92606 0.90917 0.93891 0.93367 0.89107 0.90315 0.91287 0.95675 0.94733 0.92729 0.91404 0.90224 0.91595 0.91626 0.91941 0.91379 0.85694 0.82089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.19 37.16 0.34 -1.29 16 2 C -0.12 -1.64 3.11 -90.62 -0.28 -1.92 16 3 C -0.16 -2.10 6.86 37.16 0.25 -1.85 16 4 C 0.12 1.92 4.87 -4.04 -0.02 1.90 16 5 N -0.59 -12.30 2.26 -175.06 -0.40 -12.70 16 6 C 0.22 5.52 4.21 -5.19 -0.02 5.50 16 7 C -0.52 -15.33 9.94 -34.44 -0.34 -15.67 16 8 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 9 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 10 N -0.90 -28.30 13.96 55.43 0.77 -27.52 16 11 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 12 H -0.27 -6.99 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 15 C 0.54 10.93 4.69 -10.99 -0.05 10.88 16 16 O -0.54 -12.99 13.93 5.55 0.08 -12.92 16 17 C -0.12 -1.78 1.98 -90.65 -0.18 -1.96 16 18 H 0.09 1.26 3.76 -51.93 -0.20 1.07 16 19 C -0.12 -1.62 6.32 -25.07 -0.16 -1.78 16 20 C -0.12 -1.29 6.91 -24.74 -0.17 -1.46 16 21 C -0.16 -1.74 6.51 -25.07 -0.16 -1.90 16 22 C 0.11 1.32 2.73 -66.59 -0.18 1.14 16 23 H 0.08 0.93 6.69 -51.93 -0.35 0.58 16 24 N -0.84 -11.66 6.62 -3.71 -0.02 -11.68 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.16 8.04 -51.93 -0.42 0.74 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.56 5.55 -51.93 -0.29 0.27 16 31 H 0.09 1.37 4.63 -51.93 -0.24 1.13 16 32 H 0.08 1.39 8.12 -51.93 -0.42 0.97 16 33 H 0.07 1.00 5.73 -51.93 -0.30 0.70 16 34 H 0.03 0.61 7.02 -51.93 -0.36 0.25 16 35 H 0.03 0.93 6.92 -51.93 -0.36 0.57 16 36 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.34 7.44 -51.93 -0.39 0.95 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 42 H 0.07 0.82 7.83 -51.93 -0.41 0.41 16 43 H 0.33 3.68 9.08 -39.29 -0.36 3.33 16 44 H 0.36 5.83 6.65 -39.29 -0.26 5.57 16 LS Contribution 326.75 15.07 4.92 4.92 Total: -1.00 -33.02 326.75 -7.70 -40.72 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -7.32 Total: 8.11 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -1.07 Total: -6.41 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.35 Total: -51.90 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.08 Total: -12.92 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.02 -7.70 -40.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085369203.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.516 kcal (2) G-P(sol) polarization free energy of solvation -33.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds