Wall clock time and date at job start Mon Mar 30 2020 05:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47469 * 2 1 4 4 H 1.09002 * 109.47070 * 305.00072 * 3 2 1 5 5 C 1.50701 * 109.47419 * 184.99997 * 3 2 1 6 6 H 1.07998 * 120.00129 * 240.00616 * 5 3 2 7 7 C 1.37880 * 119.99861 * 59.99898 * 5 3 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 N 1.46499 * 109.46799 * 65.00172 * 3 2 1 14 14 C 1.34778 * 119.99771 * 274.99826 * 13 3 2 15 15 O 1.21279 * 120.00041 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99935 * 180.02562 * 14 13 3 17 17 H 1.08995 * 109.47091 * 59.99897 * 16 14 13 18 18 C 1.53002 * 109.47014 * 300.00266 * 16 14 13 19 19 C 1.53003 * 109.47007 * 299.99668 * 18 16 14 20 20 C 1.53003 * 109.47178 * 300.00465 * 19 18 16 21 21 C 1.52993 * 109.47407 * 59.99772 * 20 19 18 22 22 C 1.52997 * 109.47250 * 180.02562 * 16 14 13 23 23 H 1.08996 * 109.47522 * 179.97438 * 22 16 14 24 24 C 1.53002 * 109.47248 * 300.00022 * 22 16 14 25 25 N 1.46895 * 109.47104 * 184.99671 * 24 22 16 26 26 H 1.08988 * 109.47178 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47151 * 300.00410 * 1 2 3 28 28 H 1.09006 * 109.46918 * 59.99351 * 1 2 3 29 29 H 1.09008 * 109.47149 * 240.00076 * 2 1 3 30 30 H 1.08997 * 109.47163 * 120.00146 * 2 1 3 31 31 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 32 32 H 0.96998 * 120.00630 * 95.00428 * 13 3 2 33 33 H 1.08991 * 109.47341 * 59.99752 * 18 16 14 34 34 H 1.09000 * 109.46953 * 180.02562 * 18 16 14 35 35 H 1.09000 * 109.46949 * 60.00383 * 19 18 16 36 36 H 1.08999 * 109.47062 * 180.02562 * 19 18 16 37 37 H 1.09004 * 109.46753 * 180.02562 * 20 19 18 38 38 H 1.08999 * 109.46907 * 299.99064 * 20 19 18 39 39 H 1.09000 * 109.46947 * 59.99943 * 21 20 19 40 40 H 1.08999 * 109.47400 * 179.97438 * 21 20 19 41 41 H 1.09001 * 109.46802 * 305.00247 * 24 22 16 42 42 H 1.09001 * 109.46790 * 64.99790 * 24 22 16 43 43 H 1.00905 * 111.00219 * 179.97438 * 25 24 22 44 44 H 1.00893 * 111.00650 * 303.95109 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8799 -1.3811 10 1 6.5538 -0.3521 -0.7598 11 1 6.3836 0.9214 -2.8165 12 1 6.5576 2.0718 -0.6889 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3394 2.6320 0.4344 16 6 0.0368 3.3386 2.6545 17 1 0.7282 4.1540 2.8668 18 6 0.0808 2.3222 3.7973 19 6 -0.8898 1.1776 3.4994 20 6 -2.3088 1.7338 3.3659 21 6 -2.3528 2.7502 2.2232 22 6 -1.3825 3.8943 2.5213 23 1 -1.6709 4.3815 3.4526 24 6 -1.4271 4.9106 1.3784 25 7 -2.7573 5.5316 1.3270 26 1 -0.3633 -1.0275 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5140 -0.8900 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 3.8293 -0.0604 -2.9503 32 1 2.2720 2.1231 1.9978 33 1 1.0917 1.9259 3.8924 34 1 -0.2078 2.8097 4.7285 35 1 -0.6016 0.6899 2.5682 36 1 -0.8588 0.4537 4.3137 37 1 -3.0003 0.9183 3.1541 38 1 -2.5971 2.2214 4.2972 39 1 -2.0646 2.2625 1.2919 40 1 -3.3639 3.1462 2.1277 41 1 -0.6731 5.6796 1.5465 42 1 -1.2256 4.4045 0.4342 43 1 -2.8122 6.2077 0.5800 44 1 -3.4794 4.8329 1.2364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089398312.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:16 Heat of formation + Delta-G solvation = -84.699451 kcal Electronic energy + Delta-G solvation = -22554.416712 eV Core-core repulsion = 19504.447372 eV Total energy + Delta-G solvation = -3049.969340 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.65649 -38.59371 -36.67116 -35.50413 -34.22855 -33.11142 -31.57371 -30.94614 -28.86153 -25.81052 -25.10720 -24.15228 -22.18729 -21.92830 -21.18166 -20.48396 -18.46898 -17.38553 -17.10339 -16.88453 -16.53212 -16.06176 -15.85490 -15.32885 -14.89463 -14.68200 -14.48319 -14.32236 -13.96276 -13.86121 -13.40643 -13.18802 -12.97978 -12.92106 -12.79801 -12.70681 -12.61799 -12.27160 -12.16732 -12.07283 -11.84050 -11.63204 -11.26842 -11.04020 -10.94364 -10.86036 -10.53682 -10.12533 -9.58602 -9.32171 -8.15582 -6.32426 1.43444 1.44068 1.54205 2.02863 2.37464 2.77507 3.13885 3.59186 3.82623 3.86555 3.97023 4.23383 4.29895 4.45709 4.49967 4.51589 4.57173 4.61015 4.66798 4.73036 4.80119 4.88264 4.92955 5.06332 5.10840 5.14349 5.22626 5.27788 5.33888 5.39257 5.42753 5.47389 5.51072 5.60280 5.66822 5.82230 5.86160 5.99863 6.21786 6.25468 6.60269 6.77707 7.13536 7.36009 7.74979 8.89352 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025714 B = 0.005514 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.647243 B = 5076.864607 C = 5297.971454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.118 4.118 3 C 0.283 3.717 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.069 0.931 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.709 5.709 14 C 0.506 3.494 15 O -0.570 6.570 16 C -0.102 4.102 17 H 0.105 0.895 18 C -0.102 4.102 19 C -0.131 4.131 20 C -0.110 4.110 21 C -0.127 4.127 22 C -0.050 4.050 23 H 0.091 0.909 24 C 0.053 3.947 25 N -0.848 5.848 26 H 0.037 0.963 27 H 0.063 0.937 28 H 0.022 0.978 29 H 0.066 0.934 30 H 0.036 0.964 31 H 0.263 0.737 32 H 0.398 0.602 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.041 0.959 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.031 0.969 43 H 0.343 0.657 44 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.099 4.671 12.990 16.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.157 4.157 3 C 0.179 3.821 4 H 0.014 0.986 5 C -0.585 4.585 6 H 0.087 0.913 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.792 3.208 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.190 1.190 13 N -0.358 5.358 14 C 0.294 3.706 15 O -0.451 6.451 16 C -0.124 4.124 17 H 0.123 0.877 18 C -0.140 4.140 19 C -0.168 4.168 20 C -0.148 4.148 21 C -0.165 4.165 22 C -0.069 4.069 23 H 0.109 0.891 24 C -0.078 4.078 25 N -0.378 5.378 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.232 0.768 33 H 0.089 0.911 34 H 0.115 0.885 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.155 0.845 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.442 4.819 12.871 16.130 hybrid contribution 1.239 -0.615 -1.549 2.077 sum -7.203 4.205 11.322 14.063 Atomic orbital electron populations 1.21820 0.96918 0.98854 1.00995 1.21737 0.93846 0.99320 1.00768 1.18245 0.93193 0.88986 0.81696 0.98630 1.21616 0.91826 1.38595 1.06453 0.91313 1.25741 1.03079 0.94505 0.95112 1.70054 1.36937 1.38562 1.09875 0.85425 0.79479 0.78832 0.77082 1.19741 1.21369 1.18952 1.46300 1.15935 1.56438 1.17096 1.21041 0.81289 0.78227 0.90052 1.90534 1.51481 1.60618 1.42463 1.21465 0.98950 0.99275 0.92677 0.87745 1.21510 1.00204 0.95145 0.97143 1.21698 0.95679 0.98101 1.01347 1.21470 0.96209 0.98232 0.98870 1.21770 0.98613 0.96364 0.99741 1.20793 0.92637 0.94758 0.98670 0.89074 1.22013 0.91180 0.95961 0.98630 1.58845 1.04604 1.20582 1.53736 0.94420 0.91834 0.95884 0.91608 0.94490 0.92745 0.76756 0.91068 0.88457 0.94065 0.90500 0.92449 0.90433 0.92130 0.91887 0.92368 0.95060 0.84544 0.84582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.72 8.52 71.98 0.61 -5.11 16 2 C -0.12 -5.76 5.45 30.59 0.17 -5.59 16 3 C 0.28 14.23 2.24 44.25 0.10 14.33 16 4 H 0.00 -0.25 7.58 -2.39 -0.02 -0.27 16 5 C -0.55 -28.76 8.73 25.60 0.22 -28.54 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.38 16 7 C 0.02 0.83 5.29 84.66 0.45 1.28 16 8 N -0.92 -52.55 11.29 21.45 0.24 -52.31 16 9 Si 0.97 42.12 29.54 68.60 2.03 44.15 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 13 N -0.71 -28.13 4.91 -446.09 -2.19 -30.32 16 14 C 0.51 18.41 4.20 87.66 0.37 18.78 16 15 O -0.57 -24.45 8.50 -3.03 -0.03 -24.48 16 16 C -0.10 -2.66 2.55 -11.54 -0.03 -2.69 16 17 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 18 C -0.10 -2.18 5.36 30.60 0.16 -2.02 16 19 C -0.13 -3.11 5.70 30.60 0.17 -2.94 16 20 C -0.11 -2.45 5.92 30.59 0.18 -2.27 16 21 C -0.13 -3.34 4.70 30.58 0.14 -3.19 16 22 C -0.05 -1.24 2.14 -10.81 -0.02 -1.27 16 23 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 24 C 0.05 1.49 5.87 86.30 0.51 1.99 16 25 N -0.85 -19.96 9.62 -186.72 -1.80 -21.76 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.06 2.63 3.22 -2.39 -0.01 2.62 16 28 H 0.02 1.10 7.85 -2.38 -0.02 1.08 16 29 H 0.07 3.65 5.95 -2.38 -0.01 3.64 16 30 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.40 13.72 7.96 -92.71 -0.74 12.98 16 33 H 0.07 1.48 7.56 -2.39 -0.02 1.46 16 34 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.04 1.26 4.84 -2.39 -0.01 1.25 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 2.07 5.51 -2.39 -0.01 2.06 16 40 H 0.06 1.49 6.67 -2.39 -0.02 1.47 16 41 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.03 1.12 5.64 -2.39 -0.01 1.10 16 43 H 0.34 7.25 9.08 -89.69 -0.81 6.44 16 44 H 0.34 7.61 7.24 -89.70 -0.65 6.96 16 Total: -1.00 -62.38 320.27 0.11 -62.27 By element: Atomic # 1 Polarization: 40.85 SS G_CDS: -1.18 Total: 39.67 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 3.04 Total: -17.22 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -3.75 Total: -104.39 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.03 Total: -24.48 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -62.38 0.11 -62.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089398312.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.434 kcal (2) G-P(sol) polarization free energy of solvation -62.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds