Wall clock time and date at job start Mon Mar 30 2020 05:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47124 * 2 1 4 4 C 1.53000 * 109.46885 * 120.00299 * 2 1 3 5 5 N 1.46503 * 109.47037 * 65.98261 * 4 2 1 6 6 C 1.46498 * 120.00367 * 82.44746 * 5 4 2 7 7 C 1.50702 * 109.47221 * 89.99420 * 6 5 4 8 8 H 1.08000 * 120.00225 * 359.72596 * 7 6 5 9 9 C 1.37881 * 119.99581 * 180.02562 * 7 6 5 10 10 N 1.31506 * 120.00312 * 359.72338 * 9 7 6 11 11 Si 1.86802 * 119.99628 * 179.72941 * 9 7 6 12 12 H 1.48496 * 109.47312 * 89.99744 * 11 9 7 13 13 H 1.48499 * 109.47090 * 210.00036 * 11 9 7 14 14 H 1.48503 * 109.46809 * 329.99452 * 11 9 7 15 15 C 1.34776 * 119.99800 * 262.44215 * 5 4 2 16 16 O 1.21281 * 120.00444 * 184.52672 * 15 5 4 17 17 C 1.50703 * 120.00121 * 4.52432 * 15 5 4 18 18 C 1.53002 * 109.47277 * 186.64999 * 17 15 5 19 19 H 1.08994 * 110.62680 * 56.65118 * 18 17 15 20 20 C 1.55143 * 110.70326 * 179.97438 * 18 17 15 21 21 C 1.54911 * 101.64842 * 154.03447 * 20 18 17 22 22 N 1.47843 * 104.79648 * 322.92930 * 21 20 18 23 23 C 1.47437 * 108.57041 * 24.09823 * 22 21 20 24 24 H 1.08994 * 109.47231 * 296.29814 * 1 2 3 25 25 H 1.09007 * 109.46706 * 56.29659 * 1 2 3 26 26 H 1.09001 * 109.46942 * 176.28792 * 1 2 3 27 27 H 1.09010 * 109.46981 * 239.99803 * 2 1 3 28 28 H 1.09003 * 109.46795 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47366 * 299.99668 * 3 2 1 30 30 H 1.09002 * 109.46830 * 60.00336 * 3 2 1 31 31 H 1.09003 * 109.47053 * 305.97910 * 4 2 1 32 32 H 1.09001 * 109.47023 * 185.98288 * 4 2 1 33 33 H 1.09006 * 109.46651 * 329.99973 * 6 5 4 34 34 H 1.08997 * 109.47140 * 209.99778 * 6 5 4 35 35 H 0.97000 * 120.00363 * 179.97438 * 10 9 7 36 36 H 1.09000 * 109.47336 * 306.65001 * 17 15 5 37 37 H 1.08996 * 109.46931 * 66.64535 * 17 15 5 38 38 H 1.09002 * 110.98944 * 272.12147 * 20 18 17 39 39 H 1.08994 * 110.99050 * 35.94326 * 20 18 17 40 40 H 1.08999 * 110.37091 * 204.09509 * 21 20 18 41 41 H 1.09004 * 110.46527 * 81.81053 * 21 20 18 42 42 H 1.00902 * 110.99818 * 261.82097 * 22 21 20 43 43 H 1.08997 * 109.88836 * 239.60835 * 23 22 21 44 44 H 1.08999 * 109.89624 * 118.41172 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6727 -2.1378 1.1793 6 6 2.4984 -3.0716 0.4096 7 6 3.5652 -3.6519 1.3019 8 1 3.6252 -3.3516 2.3376 9 6 4.4685 -4.5617 0.7944 10 7 4.3957 -4.9271 -0.4667 11 14 5.7956 -5.2754 1.8986 12 1 5.2895 -6.5131 2.5444 13 1 6.9960 -5.5965 1.0856 14 1 6.1562 -4.2836 2.9435 15 6 0.5752 -2.5820 1.8232 16 8 0.3161 -3.7667 1.8340 17 6 -0.3303 -1.6064 2.5300 18 6 -1.3975 -2.3752 3.3116 19 1 -0.9344 -3.0711 4.0111 20 6 -2.3466 -1.3965 4.0521 21 6 -3.6389 -2.2427 4.1695 22 7 -3.7090 -3.0024 2.9031 23 6 -2.3474 -3.1200 2.3500 24 1 -0.3633 0.4553 0.9212 25 1 -0.3633 0.5703 -0.8550 26 1 -0.3633 -1.0255 -0.0665 27 1 1.8934 -0.5139 -0.8901 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.5918 -0.2730 2.1360 32 1 3.1247 -0.6295 1.3044 33 1 2.9671 -2.5429 -0.4205 34 1 1.8725 -3.8752 0.0215 35 1 5.0314 -5.5668 -0.8238 36 1 0.2570 -0.9988 3.2185 37 1 -0.8121 -0.9606 1.7960 38 1 -1.9549 -1.1432 5.0373 39 1 -2.5205 -0.4982 3.4599 40 1 -4.5090 -1.5942 4.2718 41 1 -3.5726 -2.9241 5.0177 42 1 -4.3289 -2.5532 2.2458 43 1 -2.3079 -2.6623 1.3616 44 1 -2.0621 -4.1701 2.2866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089745286.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:15 Heat of formation + Delta-G solvation = -72.310939 kcal Electronic energy + Delta-G solvation = -21783.292699 eV Core-core repulsion = 18733.860565 eV Total energy + Delta-G solvation = -3049.432134 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.14245 -39.21350 -37.66894 -35.51862 -34.09468 -33.21725 -30.24564 -29.64713 -28.24848 -27.29814 -26.69402 -24.55153 -22.45443 -21.40417 -21.27953 -19.63774 -18.57451 -17.95856 -17.47153 -16.92572 -16.90612 -16.27302 -15.88934 -15.53478 -14.74115 -14.55269 -14.49110 -14.45001 -13.88270 -13.73419 -13.57213 -13.32710 -13.18658 -12.92226 -12.79117 -12.62090 -12.57647 -12.35927 -12.25530 -12.13831 -11.98443 -11.86325 -11.70910 -11.61926 -11.56931 -11.40392 -10.66460 -10.45988 -9.39725 -9.36340 -8.23200 -6.38090 1.33803 1.37354 1.46674 1.89927 2.30571 2.46394 3.05837 3.32657 3.56920 3.74606 3.91538 3.98855 4.01908 4.06814 4.28775 4.38170 4.45119 4.46989 4.55128 4.63672 4.71697 4.79702 4.82561 4.86072 4.93907 4.99847 5.04254 5.06402 5.07797 5.08183 5.22087 5.29999 5.31924 5.38879 5.44304 5.50760 5.58637 5.86843 5.92616 6.06635 6.55445 6.69897 6.85555 7.28406 7.55455 8.83552 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.005898 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.219927 B = 4746.334144 C = 5913.661929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C -0.135 4.135 4 C 0.110 3.890 5 N -0.602 5.602 6 C 0.266 3.734 7 C -0.540 4.540 8 H 0.051 0.949 9 C 0.007 3.993 10 N -0.929 5.929 11 Si 0.966 3.034 12 H -0.282 1.282 13 H -0.274 1.274 14 H -0.261 1.261 15 C 0.493 3.507 16 O -0.593 6.593 17 C -0.128 4.128 18 C -0.092 4.092 19 H 0.055 0.945 20 C -0.136 4.136 21 C 0.046 3.954 22 N -0.700 5.700 23 C 0.065 3.935 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.028 0.972 27 H 0.043 0.957 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.018 0.982 34 H -0.008 1.008 35 H 0.267 0.733 36 H 0.112 0.888 37 H 0.125 0.875 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.346 0.654 43 H 0.046 0.954 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.054 16.771 6.430 21.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.133 4.133 3 C -0.193 4.193 4 C -0.012 4.012 5 N -0.332 5.332 6 C 0.144 3.856 7 C -0.579 4.579 8 H 0.069 0.931 9 C -0.192 4.192 10 N -0.569 5.569 11 Si 0.791 3.209 12 H -0.208 1.208 13 H -0.198 1.198 14 H -0.186 1.186 15 C 0.283 3.717 16 O -0.474 6.474 17 C -0.168 4.168 18 C -0.112 4.112 19 H 0.074 0.926 20 C -0.175 4.175 21 C -0.083 4.083 22 N -0.329 5.329 23 C -0.064 4.064 24 H 0.102 0.898 25 H 0.087 0.913 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.036 0.964 34 H 0.010 0.990 35 H 0.075 0.925 36 H 0.130 0.870 37 H 0.143 0.857 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.163 0.837 43 H 0.065 0.935 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.109 15.402 6.585 20.669 hybrid contribution 1.330 -0.457 -0.447 1.475 sum -10.780 14.945 6.138 19.423 Atomic orbital electron populations 1.22013 0.94375 1.00513 1.03300 1.21503 0.96992 0.97394 0.97407 1.21711 1.00920 0.93458 1.03183 1.21866 1.00776 0.79204 0.99372 1.48207 1.25395 1.09846 1.49770 1.18603 0.88638 0.87641 0.90677 1.21703 1.13855 1.25474 0.96834 0.93080 1.25855 1.00268 0.96470 0.96582 1.70049 1.38203 1.33745 1.14931 0.85438 0.78172 0.78619 0.78719 1.20774 1.19848 1.18560 1.21432 0.81701 0.89564 0.79047 1.90648 1.74339 1.20016 1.62398 1.22115 0.96373 0.97573 1.00694 1.22097 0.95125 0.97087 0.96921 0.92647 1.23175 0.94926 0.97780 1.01572 1.22939 0.97941 0.95059 0.92381 1.61632 1.09301 1.54649 1.07346 1.22412 0.87741 0.99636 0.96604 0.89776 0.91331 0.95241 0.93868 0.93019 0.91564 0.90444 0.87775 0.91753 0.96443 0.98997 0.92456 0.86951 0.85736 0.89106 0.89071 0.88769 0.91543 0.83703 0.93545 0.94090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 7.39 71.98 0.53 -2.62 16 2 C -0.11 -2.93 3.10 -10.79 -0.03 -2.96 16 3 C -0.14 -2.50 9.19 71.98 0.66 -1.84 16 4 C 0.11 3.40 4.88 86.38 0.42 3.82 16 5 N -0.60 -25.67 2.25 -826.13 -1.86 -27.53 16 6 C 0.27 14.74 5.14 85.63 0.44 15.18 16 7 C -0.54 -32.00 9.39 25.60 0.24 -31.75 16 8 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 9 C 0.01 0.41 5.46 84.66 0.46 0.88 16 10 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 11 Si 0.97 46.03 29.54 68.60 2.03 48.06 16 12 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 14 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 15 C 0.49 20.46 6.54 87.66 0.57 21.04 16 16 O -0.59 -31.15 14.31 -3.03 -0.04 -31.19 16 17 C -0.13 -3.44 3.53 29.85 0.11 -3.34 16 18 C -0.09 -2.51 2.57 -9.61 -0.02 -2.53 16 19 H 0.05 1.83 8.12 -2.39 -0.02 1.81 16 20 C -0.14 -2.35 6.52 31.98 0.21 -2.14 16 21 C 0.05 0.83 7.57 86.78 0.66 1.49 16 22 N -0.70 -16.84 7.39 -504.44 -3.73 -20.57 16 23 C 0.07 1.99 6.07 86.65 0.53 2.52 16 24 H 0.08 1.33 6.71 -2.39 -0.02 1.31 16 25 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.03 0.80 6.45 -2.39 -0.02 0.79 16 27 H 0.04 1.40 7.93 -2.38 -0.02 1.38 16 28 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.10 2.41 6.01 -2.39 -0.01 2.40 16 32 H 0.06 2.16 8.13 -2.39 -0.02 2.14 16 33 H 0.02 0.99 7.86 -2.38 -0.02 0.98 16 34 H -0.01 -0.52 7.49 -2.39 -0.02 -0.54 16 35 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.11 2.43 6.90 -2.39 -0.02 2.41 16 37 H 0.12 2.71 4.16 -2.39 -0.01 2.70 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.09 1.20 8.05 -2.39 -0.02 1.18 16 40 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 42 H 0.35 6.69 8.91 -89.69 -0.80 5.89 16 43 H 0.05 1.39 7.77 -2.39 -0.02 1.37 16 44 H 0.04 1.62 7.57 -2.39 -0.02 1.60 16 Total: -1.00 -76.72 340.61 1.62 -75.09 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.17 Total: 15.71 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 4.77 Total: -2.26 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -5.30 Total: -105.41 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.04 Total: -31.19 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -76.72 1.62 -75.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089745286.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.782 kcal (2) G-P(sol) polarization free energy of solvation -76.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds