Wall clock time and date at job start Mon Mar 30 2020 05:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46885 * 2 1 4 4 C 1.52996 * 109.47589 * 120.00217 * 2 1 3 5 5 N 1.46512 * 109.46850 * 65.83752 * 4 2 1 6 6 C 1.46502 * 119.99924 * 263.86189 * 5 4 2 7 7 C 1.50694 * 109.46957 * 270.00076 * 6 5 4 8 8 H 1.08000 * 120.00456 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99853 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99847 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99890 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.46861 * 89.99799 * 11 9 7 13 13 H 1.48501 * 109.46939 * 209.99685 * 11 9 7 14 14 H 1.48500 * 109.47134 * 330.00118 * 11 9 7 15 15 C 1.34776 * 119.99693 * 83.86340 * 5 4 2 16 16 O 1.21283 * 120.00051 * 4.75897 * 15 5 4 17 17 C 1.50697 * 119.99671 * 184.76040 * 15 5 4 18 18 H 1.09001 * 110.43575 * 47.93390 * 17 15 5 19 19 C 1.54270 * 110.48700 * 285.39523 * 17 15 5 20 20 C 1.53870 * 106.59998 * 217.58173 * 19 17 15 21 21 C 1.54263 * 106.59976 * 359.97438 * 20 19 17 22 22 H 1.09005 * 110.48616 * 264.80116 * 21 20 19 23 23 N 1.46902 * 110.49024 * 142.28860 * 21 20 19 24 24 C 1.54887 * 110.60050 * 170.55603 * 17 15 5 25 25 H 1.09004 * 109.46903 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47232 * 299.99473 * 1 2 3 27 27 H 1.08999 * 109.47263 * 59.99815 * 1 2 3 28 28 H 1.09001 * 109.47232 * 240.00527 * 2 1 3 29 29 H 1.09000 * 109.47044 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47371 * 300.00702 * 3 2 1 31 31 H 1.09007 * 109.46938 * 60.00653 * 3 2 1 32 32 H 1.08997 * 109.47491 * 305.84255 * 4 2 1 33 33 H 1.08995 * 109.47262 * 185.83489 * 4 2 1 34 34 H 1.09004 * 109.47141 * 30.00274 * 6 5 4 35 35 H 1.08993 * 109.46566 * 150.00018 * 6 5 4 36 36 H 0.96998 * 119.99747 * 180.02562 * 10 9 7 37 37 H 1.09004 * 110.03238 * 336.86627 * 19 17 15 38 38 H 1.09002 * 110.03364 * 98.29022 * 19 17 15 39 39 H 1.09004 * 110.03414 * 119.28394 * 20 19 17 40 40 H 1.09004 * 110.03065 * 240.66714 * 20 19 17 41 41 H 1.00907 * 110.99773 * 61.45160 * 23 21 20 42 42 H 1.00897 * 111.00543 * 185.40473 * 23 21 20 43 43 H 1.09004 * 110.75339 * 274.99060 * 24 17 15 44 44 H 1.09007 * 110.75343 * 38.35833 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6698 -2.1372 1.1809 6 6 0.4597 -2.6113 1.8570 7 6 0.8013 -3.0283 3.2642 8 1 1.8179 -2.9478 3.6197 9 6 -0.1845 -3.5116 4.0985 10 7 0.1137 -3.8760 5.3265 11 14 -1.9431 -3.6501 3.4840 12 1 -2.1500 -4.9879 2.8733 13 1 -2.8804 -3.4752 4.6224 14 1 -2.1966 -2.5975 2.4677 15 6 2.4426 -3.0035 0.4961 16 8 3.4885 -2.6292 0.0094 17 6 2.0069 -4.4371 0.3352 18 1 0.9665 -4.4848 0.0136 19 6 2.1999 -5.2115 1.6554 20 6 2.6727 -6.6244 1.2711 21 6 2.7498 -6.6596 -0.2692 22 1 1.8303 -7.0687 -0.6879 23 7 3.9086 -7.4486 -0.7081 24 6 2.9209 -5.1744 -0.6747 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.5940 -0.2715 2.1361 33 1 3.1250 -0.6316 1.3029 34 1 -0.2787 -1.8099 1.8845 35 1 0.0509 -3.4636 1.3145 36 1 -0.5797 -4.2163 5.9132 37 1 2.9540 -4.7197 2.2699 38 1 1.2555 -5.2680 2.1967 39 1 3.6562 -6.8184 1.6991 40 1 1.9580 -7.3668 1.6266 41 1 3.8348 -8.4048 -0.3944 42 1 4.0177 -7.4043 -1.7102 43 1 2.5781 -5.0111 -1.6965 44 1 3.9579 -4.8589 -0.5589 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091543700.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:43 Heat of formation + Delta-G solvation = -60.321659 kcal Electronic energy + Delta-G solvation = -22123.755091 eV Core-core repulsion = 19074.842851 eV Total energy + Delta-G solvation = -3048.912240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.71766 -37.46633 -35.94272 -34.13910 -32.40440 -32.26015 -28.55619 -28.24231 -26.94880 -26.73825 -25.05329 -22.52755 -21.07807 -19.83454 -19.66955 -17.99465 -17.02314 -16.46706 -15.72784 -15.50661 -15.05095 -14.80891 -14.56506 -14.27246 -13.80920 -13.14678 -13.04692 -12.92249 -12.65669 -12.40977 -12.11440 -11.92430 -11.55426 -11.34560 -11.24757 -11.04883 -10.95998 -10.76713 -10.66363 -10.62249 -10.54934 -10.35352 -10.23938 -10.22751 -9.94284 -9.55883 -8.93937 -8.68542 -8.59587 -7.67782 -6.20668 -4.20013 3.15116 3.23655 3.25550 3.40647 3.87181 4.25889 4.62964 4.91152 5.00630 5.09853 5.19410 5.25259 5.37919 5.39306 5.56218 5.74693 5.83143 5.88537 5.92163 5.96829 5.97165 6.01070 6.08884 6.21036 6.24245 6.25270 6.28866 6.37085 6.44308 6.53092 6.59552 6.63744 6.65441 6.71114 6.91070 7.05935 7.32725 7.41656 7.46719 7.51651 8.18170 8.44803 8.85381 9.00468 9.38809 10.91828 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.011541 B = 0.009192 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.591769 B = 3045.403062 C = 4858.858902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.141 4.141 4 C 0.126 3.874 5 N -0.589 5.589 6 C 0.206 3.794 7 C -0.531 4.531 8 H 0.079 0.921 9 C 0.077 3.923 10 N -0.890 5.890 11 Si 0.864 3.136 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.264 1.264 15 C 0.526 3.474 16 O -0.569 6.569 17 C -0.106 4.106 18 H 0.088 0.912 19 C -0.096 4.096 20 C -0.118 4.118 21 C 0.082 3.918 22 H 0.037 0.963 23 N -0.843 5.843 24 C -0.097 4.097 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.035 0.965 35 H 0.028 0.972 36 H 0.265 0.735 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.337 0.663 42 H 0.337 0.663 43 H 0.057 0.943 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.096 -0.382 -10.931 10.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C -0.199 4.199 4 C 0.002 3.998 5 N -0.318 5.318 6 C 0.085 3.915 7 C -0.570 4.570 8 H 0.097 0.903 9 C -0.127 4.127 10 N -0.528 5.528 11 Si 0.691 3.309 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.189 1.189 15 C 0.315 3.685 16 O -0.449 6.449 17 C -0.127 4.127 18 H 0.106 0.894 19 C -0.135 4.135 20 C -0.156 4.156 21 C -0.030 4.030 22 H 0.055 0.945 23 N -0.372 5.372 24 C -0.136 4.136 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.075 0.925 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.957 0.254 -10.529 10.575 hybrid contribution -1.915 -0.733 -0.550 2.123 sum -0.959 -0.479 -11.079 11.130 Atomic orbital electron populations 1.21879 0.95374 1.02056 1.00971 1.21499 0.96004 0.96028 0.99590 1.21743 1.00962 0.95819 1.01376 1.21350 1.00360 0.81080 0.96996 1.47870 1.26407 1.07229 1.50291 1.19892 0.83035 0.95196 0.93370 1.21365 0.97623 1.43136 0.94860 0.90281 1.24839 0.98325 0.94825 0.94668 1.69890 1.33678 1.42812 1.06384 0.87031 0.85576 0.79229 0.79053 1.19894 1.20968 1.18897 1.20330 0.83385 0.87341 0.77454 1.90582 1.23964 1.79416 1.50959 1.21986 1.00219 0.92343 0.98174 0.89381 1.22034 1.03904 0.92604 0.94924 1.22229 1.01571 0.98040 0.93810 1.22258 0.90568 0.93943 0.96182 0.94496 1.58760 1.44100 1.16379 1.17949 1.22397 1.01616 0.92501 0.97060 0.92290 0.92669 0.93534 0.91286 0.92697 0.93024 0.92674 0.90292 0.91119 0.94742 0.95399 0.92454 0.91167 0.88976 0.91020 0.92355 0.85067 0.85103 0.92459 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.39 37.16 0.31 -1.82 16 2 C -0.11 -1.73 3.07 -90.62 -0.28 -2.00 16 3 C -0.14 -1.81 9.19 37.16 0.34 -1.47 16 4 C 0.13 2.29 4.81 -4.04 -0.02 2.27 16 5 N -0.59 -11.92 2.20 -175.06 -0.39 -12.31 16 6 C 0.21 4.43 2.90 -5.20 -0.02 4.41 16 7 C -0.53 -13.45 7.66 -34.44 -0.26 -13.71 16 8 H 0.08 2.28 8.06 -52.49 -0.42 1.85 16 9 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16 10 N -0.89 -25.23 13.96 55.43 0.77 -24.45 16 11 Si 0.86 19.36 27.47 -169.99 -4.67 14.69 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 15 C 0.53 10.83 6.79 -10.99 -0.07 10.76 16 16 O -0.57 -12.84 15.34 5.55 0.09 -12.75 16 17 C -0.11 -1.91 2.30 -90.11 -0.21 -2.12 16 18 H 0.09 1.50 6.95 -51.93 -0.36 1.14 16 19 C -0.10 -1.83 4.81 -25.61 -0.12 -1.95 16 20 C -0.12 -1.88 6.53 -25.62 -0.17 -2.05 16 21 C 0.08 1.15 4.00 -66.04 -0.26 0.89 16 22 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 23 N -0.84 -10.26 9.26 -3.25 -0.03 -10.29 16 24 C -0.10 -1.57 5.69 -24.73 -0.14 -1.71 16 25 H 0.06 0.94 6.37 -51.93 -0.33 0.61 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 33 H 0.07 1.35 7.55 -51.93 -0.39 0.96 16 34 H 0.03 0.74 5.73 -51.93 -0.30 0.44 16 35 H 0.03 0.58 5.36 -51.93 -0.28 0.31 16 36 H 0.27 7.10 8.31 -40.82 -0.34 6.77 16 37 H 0.07 1.51 7.83 -51.93 -0.41 1.10 16 38 H 0.09 1.92 6.71 -51.93 -0.35 1.57 16 39 H 0.07 1.16 8.04 -51.93 -0.42 0.75 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.34 3.48 9.07 -39.29 -0.36 3.12 16 42 H 0.34 3.51 9.06 -39.29 -0.36 3.15 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.09 1.67 7.34 -51.92 -0.38 1.29 16 LS Contribution 338.25 15.07 5.10 5.10 Total: -1.00 -28.69 338.25 -7.86 -36.55 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -7.74 Total: 10.05 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -1.00 Total: -6.60 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.36 Total: -47.05 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.09 Total: -12.75 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.67 Total: 14.69 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.69 -7.86 -36.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091543700.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.769 kcal (2) G-P(sol) polarization free energy of solvation -28.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds