Wall clock time and date at job start Mon Mar 30 2020 05:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46885 * 2 1 4 4 C 1.52996 * 109.47589 * 120.00217 * 2 1 3 5 5 N 1.46512 * 109.46850 * 65.83752 * 4 2 1 6 6 C 1.46502 * 119.99924 * 263.86189 * 5 4 2 7 7 C 1.50694 * 109.46957 * 270.00076 * 6 5 4 8 8 H 1.08000 * 120.00456 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99853 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99847 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99890 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.46861 * 89.99799 * 11 9 7 13 13 H 1.48501 * 109.46939 * 209.99685 * 11 9 7 14 14 H 1.48500 * 109.47134 * 330.00118 * 11 9 7 15 15 C 1.34776 * 119.99693 * 83.86340 * 5 4 2 16 16 O 1.21283 * 120.00051 * 4.75897 * 15 5 4 17 17 C 1.50697 * 119.99671 * 184.76040 * 15 5 4 18 18 H 1.09001 * 110.43575 * 47.93390 * 17 15 5 19 19 C 1.54270 * 110.48700 * 285.39523 * 17 15 5 20 20 C 1.53870 * 106.59998 * 217.58173 * 19 17 15 21 21 C 1.54263 * 106.59976 * 359.97438 * 20 19 17 22 22 H 1.09005 * 110.48616 * 264.80116 * 21 20 19 23 23 N 1.46902 * 110.49024 * 142.28860 * 21 20 19 24 24 C 1.54887 * 110.60050 * 170.55603 * 17 15 5 25 25 H 1.09004 * 109.46903 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47232 * 299.99473 * 1 2 3 27 27 H 1.08999 * 109.47263 * 59.99815 * 1 2 3 28 28 H 1.09001 * 109.47232 * 240.00527 * 2 1 3 29 29 H 1.09000 * 109.47044 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47371 * 300.00702 * 3 2 1 31 31 H 1.09007 * 109.46938 * 60.00653 * 3 2 1 32 32 H 1.08997 * 109.47491 * 305.84255 * 4 2 1 33 33 H 1.08995 * 109.47262 * 185.83489 * 4 2 1 34 34 H 1.09004 * 109.47141 * 30.00274 * 6 5 4 35 35 H 1.08993 * 109.46566 * 150.00018 * 6 5 4 36 36 H 0.96998 * 119.99747 * 180.02562 * 10 9 7 37 37 H 1.09004 * 110.03238 * 336.86627 * 19 17 15 38 38 H 1.09002 * 110.03364 * 98.29022 * 19 17 15 39 39 H 1.09004 * 110.03414 * 119.28394 * 20 19 17 40 40 H 1.09004 * 110.03065 * 240.66714 * 20 19 17 41 41 H 1.00907 * 110.99773 * 61.45160 * 23 21 20 42 42 H 1.00897 * 111.00543 * 185.40473 * 23 21 20 43 43 H 1.09004 * 110.75339 * 274.99060 * 24 17 15 44 44 H 1.09007 * 110.75343 * 38.35833 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6698 -2.1372 1.1809 6 6 0.4597 -2.6113 1.8570 7 6 0.8013 -3.0283 3.2642 8 1 1.8179 -2.9478 3.6197 9 6 -0.1845 -3.5116 4.0985 10 7 0.1137 -3.8760 5.3265 11 14 -1.9431 -3.6501 3.4840 12 1 -2.1500 -4.9879 2.8733 13 1 -2.8804 -3.4752 4.6224 14 1 -2.1966 -2.5975 2.4677 15 6 2.4426 -3.0035 0.4961 16 8 3.4885 -2.6292 0.0094 17 6 2.0069 -4.4371 0.3352 18 1 0.9665 -4.4848 0.0136 19 6 2.1999 -5.2115 1.6554 20 6 2.6727 -6.6244 1.2711 21 6 2.7498 -6.6596 -0.2692 22 1 1.8303 -7.0687 -0.6879 23 7 3.9086 -7.4486 -0.7081 24 6 2.9209 -5.1744 -0.6747 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.5940 -0.2715 2.1361 33 1 3.1250 -0.6316 1.3029 34 1 -0.2787 -1.8099 1.8845 35 1 0.0509 -3.4636 1.3145 36 1 -0.5797 -4.2163 5.9132 37 1 2.9540 -4.7197 2.2699 38 1 1.2555 -5.2680 2.1967 39 1 3.6562 -6.8184 1.6991 40 1 1.9580 -7.3668 1.6266 41 1 3.8348 -8.4048 -0.3944 42 1 4.0177 -7.4043 -1.7102 43 1 2.5781 -5.0111 -1.6965 44 1 3.9579 -4.8589 -0.5589 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091543700.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:43 Heat of formation + Delta-G solvation = -78.819442 kcal Electronic energy + Delta-G solvation = -22124.557215 eV Core-core repulsion = 19074.842851 eV Total energy + Delta-G solvation = -3049.714364 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.29939 -38.80994 -37.46610 -35.72225 -34.22721 -33.55272 -30.06646 -29.93357 -28.18946 -28.00550 -26.47140 -24.39365 -22.53383 -21.15335 -20.90954 -19.64286 -18.94280 -18.03790 -17.29819 -16.89918 -16.26009 -16.10010 -16.07179 -15.78690 -15.17208 -14.80699 -14.51121 -14.45948 -14.17052 -13.82771 -13.68242 -13.20172 -13.00628 -12.79505 -12.65326 -12.62317 -12.41148 -12.17262 -12.05730 -12.02758 -11.90608 -11.80559 -11.75747 -11.59594 -11.56427 -11.38175 -10.75884 -10.54198 -9.56619 -9.37039 -8.24740 -6.29382 1.40063 1.42439 1.50941 1.75007 2.30601 2.36698 3.08805 3.52148 3.54650 3.65552 3.91715 4.01919 4.10381 4.17791 4.20698 4.41818 4.49906 4.56221 4.60702 4.63065 4.68246 4.74282 4.78820 4.85045 4.88577 4.95893 5.01140 5.03053 5.04568 5.19291 5.21732 5.32042 5.36404 5.40178 5.43700 5.46349 5.51582 5.78590 6.24157 6.33676 6.65405 6.69587 6.75263 7.28046 7.39356 8.91506 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.011541 B = 0.009192 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.591769 B = 3045.403062 C = 4858.858902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C -0.136 4.136 4 C 0.120 3.880 5 N -0.592 5.592 6 C 0.217 3.783 7 C -0.524 4.524 8 H 0.027 0.973 9 C 0.023 3.977 10 N -0.942 5.942 11 Si 0.930 3.070 12 H -0.259 1.259 13 H -0.289 1.289 14 H -0.238 1.238 15 C 0.518 3.482 16 O -0.593 6.593 17 C -0.105 4.105 18 H 0.107 0.893 19 C -0.089 4.089 20 C -0.115 4.115 21 C 0.094 3.906 22 H 0.061 0.939 23 N -0.850 5.850 24 C -0.091 4.091 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.045 0.955 36 H 0.266 0.734 37 H 0.028 0.972 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.351 0.649 42 H 0.350 0.650 43 H 0.078 0.922 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.935 -0.647 -13.477 13.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.194 4.194 4 C -0.003 4.003 5 N -0.321 5.321 6 C 0.096 3.904 7 C -0.563 4.563 8 H 0.045 0.955 9 C -0.176 4.176 10 N -0.582 5.582 11 Si 0.753 3.247 12 H -0.184 1.184 13 H -0.215 1.215 14 H -0.162 1.162 15 C 0.308 3.692 16 O -0.476 6.476 17 C -0.126 4.126 18 H 0.125 0.875 19 C -0.128 4.128 20 C -0.153 4.153 21 C -0.017 4.017 22 H 0.079 0.921 23 N -0.382 5.382 24 C -0.130 4.130 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.047 0.953 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.164 0.836 42 H 0.164 0.836 43 H 0.096 0.904 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.062 -0.003 -13.103 13.146 hybrid contribution -1.139 -0.616 0.323 1.335 sum -2.201 -0.618 -12.780 12.982 Atomic orbital electron populations 1.21852 0.94204 1.01585 1.02335 1.21405 0.96898 0.97036 0.96936 1.21714 1.00776 0.94098 1.02822 1.21497 0.99481 0.80573 0.98707 1.47954 1.26123 1.08147 1.49872 1.19723 0.83622 0.95980 0.91123 1.21393 0.95250 1.42745 0.96906 0.95496 1.25671 1.03118 0.94289 0.94504 1.70057 1.35323 1.44602 1.08177 0.85978 0.79264 0.80568 0.78927 1.18401 1.21483 1.16151 1.20846 0.83012 0.88375 0.77002 1.90560 1.24883 1.80046 1.52078 1.22062 1.01781 0.90599 0.98206 0.87462 1.21850 1.01472 0.94689 0.94789 1.22183 1.01338 0.95994 0.95745 1.22087 0.92300 0.92966 0.94341 0.92098 1.58636 1.43241 1.17176 1.19142 1.22333 0.99452 0.93630 0.97537 0.93620 0.92376 0.91101 0.92681 0.93073 0.90895 0.91864 0.90679 0.92829 0.93518 0.93759 0.92477 0.95275 0.91090 0.91902 0.90821 0.83568 0.83604 0.90354 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 8.39 71.98 0.60 -3.21 16 2 C -0.10 -3.07 3.07 -10.79 -0.03 -3.10 16 3 C -0.14 -3.24 9.19 71.98 0.66 -2.58 16 4 C 0.12 4.46 4.81 86.38 0.42 4.88 16 5 N -0.59 -24.27 2.20 -826.16 -1.82 -26.09 16 6 C 0.22 9.20 2.90 85.63 0.25 9.45 16 7 C -0.52 -27.35 7.66 25.60 0.20 -27.16 16 8 H 0.03 1.65 8.06 -2.91 -0.02 1.63 16 9 C 0.02 1.21 5.47 84.66 0.46 1.67 16 10 N -0.94 -55.18 13.96 21.45 0.30 -54.88 16 11 Si 0.93 38.94 27.47 68.60 1.88 40.83 16 12 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 13 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 14 H -0.24 -8.94 6.54 99.48 0.65 -8.29 16 15 C 0.52 21.64 6.79 87.66 0.59 22.24 16 16 O -0.59 -27.45 15.34 -3.04 -0.05 -27.50 16 17 C -0.11 -3.74 2.30 -10.47 -0.02 -3.76 16 18 H 0.11 3.41 6.95 -2.39 -0.02 3.40 16 19 C -0.09 -3.47 4.81 31.32 0.15 -3.32 16 20 C -0.11 -3.55 6.53 31.32 0.20 -3.34 16 21 C 0.09 2.43 4.00 46.00 0.18 2.61 16 22 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 23 N -0.85 -18.62 9.26 -164.19 -1.52 -20.14 16 24 C -0.09 -2.80 5.69 31.89 0.18 -2.62 16 25 H 0.04 1.34 6.37 -2.38 -0.02 1.32 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.07 2.79 8.03 -2.39 -0.02 2.77 16 33 H 0.05 2.14 7.55 -2.39 -0.02 2.12 16 34 H 0.05 1.90 5.73 -2.39 -0.01 1.88 16 35 H 0.04 1.76 5.36 -2.39 -0.01 1.75 16 36 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.03 1.33 7.83 -2.38 -0.02 1.31 16 38 H 0.07 3.02 6.71 -2.39 -0.02 3.00 16 39 H 0.06 2.05 8.04 -2.38 -0.02 2.03 16 40 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.35 6.26 9.07 -89.69 -0.81 5.45 16 42 H 0.35 6.28 9.06 -89.70 -0.81 5.47 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.06 2.32 7.34 -2.38 -0.02 2.31 16 Total: -1.00 -64.88 338.25 1.95 -62.93 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: -0.70 Total: 33.10 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 3.85 Total: -8.25 kcal Atomic # 7 Polarization: -98.07 SS G_CDS: -3.04 Total: -101.11 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.05 Total: -27.50 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 1.88 Total: 40.83 kcal Total: -64.88 1.95 -62.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091543700.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.891 kcal (2) G-P(sol) polarization free energy of solvation -64.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds