Wall clock time and date at job start Mon Mar 30 2020 05:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46565 * 2 1 4 4 C 1.52998 * 109.47344 * 120.00084 * 2 1 3 5 5 N 1.46500 * 109.46719 * 65.66579 * 4 2 1 6 6 C 1.46498 * 120.00555 * 82.35861 * 5 4 2 7 7 C 1.50696 * 109.47151 * 89.99373 * 6 5 4 8 8 H 1.08003 * 120.00161 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99746 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99879 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00254 * 359.97438 * 9 7 6 12 12 H 1.48508 * 109.46721 * 90.00208 * 11 9 7 13 13 H 1.48500 * 109.47357 * 209.99947 * 11 9 7 14 14 H 1.48500 * 109.47137 * 330.00635 * 11 9 7 15 15 C 1.34777 * 119.99529 * 262.35218 * 5 4 2 16 16 O 1.21282 * 120.00264 * 183.94012 * 15 5 4 17 17 C 1.50704 * 120.00060 * 3.94652 * 15 5 4 18 18 H 1.08994 * 110.43302 * 46.96822 * 17 15 5 19 19 C 1.54888 * 110.48226 * 284.42619 * 17 15 5 20 20 C 1.54897 * 102.74611 * 203.37949 * 19 17 15 21 21 C 1.54258 * 104.19403 * 37.94781 * 20 19 17 22 22 H 1.08993 * 110.03460 * 95.72580 * 21 20 19 23 23 N 1.46902 * 110.03000 * 217.10615 * 21 20 19 24 24 C 1.54089 * 106.62317 * 336.27402 * 21 20 19 25 25 H 1.09000 * 109.47402 * 65.73375 * 1 2 3 26 26 H 1.09002 * 109.46705 * 185.72761 * 1 2 3 27 27 H 1.08998 * 109.46893 * 305.72788 * 1 2 3 28 28 H 1.09007 * 109.46965 * 240.00862 * 2 1 3 29 29 H 1.09003 * 109.46938 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47467 * 299.99958 * 3 2 1 31 31 H 1.09001 * 109.47218 * 60.00809 * 3 2 1 32 32 H 1.08994 * 109.46929 * 305.65980 * 4 2 1 33 33 H 1.09006 * 109.46960 * 185.66013 * 4 2 1 34 34 H 1.09000 * 109.46601 * 329.99662 * 6 5 4 35 35 H 1.08998 * 109.47224 * 209.99717 * 6 5 4 36 36 H 0.96996 * 120.00099 * 179.97438 * 10 9 7 37 37 H 1.09003 * 110.75940 * 321.69403 * 19 17 15 38 38 H 1.09005 * 110.75516 * 84.88230 * 19 17 15 39 39 H 1.09007 * 110.48158 * 156.62619 * 20 19 17 40 40 H 1.08999 * 110.48605 * 279.26503 * 20 19 17 41 41 H 1.00908 * 110.99604 * 298.54343 * 23 21 20 42 42 H 1.00903 * 111.00436 * 62.49833 * 23 21 20 43 43 H 1.08995 * 110.16167 * 240.87883 * 24 21 20 44 44 H 1.09001 * 110.00198 * 119.38548 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6662 -2.1362 1.1829 6 6 2.4846 -3.0747 0.4111 7 6 3.5525 -3.6585 1.2998 8 1 3.6151 -3.3605 2.3360 9 6 4.4496 -4.5730 0.7899 10 7 5.3813 -5.0829 1.5656 11 14 4.3409 -5.0889 -1.0021 12 1 5.1758 -4.1816 -1.8298 13 1 4.8320 -6.4829 -1.1466 14 1 2.9285 -5.0122 -1.4545 15 6 0.5695 -2.5745 1.8320 16 8 0.2994 -3.7568 1.8366 17 6 -0.3215 -1.5953 2.5522 18 1 -0.5332 -0.7352 1.9171 19 6 0.3342 -1.1408 3.8797 20 6 -0.8822 -0.6845 4.7231 21 6 -1.9881 -1.7013 4.3729 22 1 -2.0131 -2.4970 5.1174 23 7 -3.2917 -1.0266 4.3141 24 6 -1.6332 -2.2795 2.9894 25 1 -0.3634 0.4223 -0.9368 26 1 -0.3633 -1.0226 0.1026 27 1 -0.3633 0.6001 0.8343 28 1 1.8934 -0.5137 -0.8901 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.5964 -0.2693 2.1362 33 1 3.1254 -0.6343 1.3013 34 1 2.9521 -2.5493 -0.4217 35 1 1.8535 -3.8761 0.0268 36 1 6.0122 -5.7265 1.2071 37 1 0.8481 -1.9726 4.3615 38 1 1.0211 -0.3120 3.7073 39 1 -0.6468 -0.7278 5.7866 40 1 -1.1866 0.3230 4.4396 41 1 -3.5298 -0.6215 5.2071 42 1 -3.3052 -0.3289 3.5853 43 1 -2.4261 -2.0581 2.2751 44 1 -1.4860 -3.3571 3.0623 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091543702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:48 Heat of formation + Delta-G solvation = -74.021847 kcal Electronic energy + Delta-G solvation = -22104.662827 eV Core-core repulsion = 19055.156503 eV Total energy + Delta-G solvation = -3049.506324 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.45550 -38.78713 -37.78436 -35.46904 -34.20528 -33.60340 -30.53028 -29.77283 -28.19077 -27.48673 -26.92200 -24.57836 -22.24574 -21.38158 -21.09588 -19.54041 -19.08604 -18.53879 -17.23306 -16.85600 -16.64911 -16.05616 -15.82526 -15.57378 -15.14373 -14.64056 -14.50214 -14.41835 -14.28637 -13.93067 -13.59978 -13.30110 -13.19605 -12.88553 -12.78102 -12.69100 -12.45902 -12.36683 -12.13049 -12.07686 -11.89626 -11.81368 -11.74808 -11.68964 -11.53973 -11.28124 -10.84523 -10.54136 -9.52051 -9.37636 -8.36412 -6.40882 1.27718 1.32692 1.43341 1.79109 2.28093 2.30474 2.97475 3.43885 3.54427 3.71993 3.80783 3.92933 4.02028 4.24760 4.32446 4.34852 4.43972 4.48277 4.50741 4.55456 4.65428 4.69822 4.75206 4.83343 4.88333 4.94384 4.99971 5.03396 5.07865 5.08548 5.20944 5.27275 5.32268 5.37473 5.42989 5.45688 5.50705 5.67895 6.22460 6.31908 6.59745 6.71987 6.73475 7.19956 7.44431 8.80792 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.018506 B = 0.006225 C = 0.005296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.618878 B = 4497.072730 C = 5285.789558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.137 4.137 4 C 0.103 3.897 5 N -0.594 5.594 6 C 0.227 3.773 7 C -0.533 4.533 8 H 0.027 0.973 9 C 0.012 3.988 10 N -0.945 5.945 11 Si 0.946 3.054 12 H -0.250 1.250 13 H -0.280 1.280 14 H -0.259 1.259 15 C 0.504 3.496 16 O -0.598 6.598 17 C -0.117 4.117 18 H 0.137 0.863 19 C -0.114 4.114 20 C -0.140 4.140 21 C 0.094 3.906 22 H 0.071 0.929 23 N -0.845 5.845 24 C -0.107 4.107 25 H 0.069 0.931 26 H 0.033 0.967 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.014 0.986 36 H 0.268 0.732 37 H 0.040 0.960 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.351 0.649 42 H 0.349 0.651 43 H 0.080 0.920 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.577 18.434 0.471 22.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.194 4.194 4 C -0.020 4.020 5 N -0.324 5.324 6 C 0.104 3.896 7 C -0.572 4.572 8 H 0.045 0.955 9 C -0.186 4.186 10 N -0.585 5.585 11 Si 0.769 3.231 12 H -0.174 1.174 13 H -0.206 1.206 14 H -0.183 1.183 15 C 0.294 3.706 16 O -0.479 6.479 17 C -0.138 4.138 18 H 0.155 0.845 19 C -0.152 4.152 20 C -0.179 4.179 21 C -0.018 4.018 22 H 0.089 0.911 23 N -0.376 5.376 24 C -0.145 4.145 25 H 0.088 0.912 26 H 0.052 0.948 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.121 0.879 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.032 0.968 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.114 0.886 41 H 0.165 0.835 42 H 0.163 0.837 43 H 0.098 0.902 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.864 16.984 0.299 21.926 hybrid contribution 1.349 -0.468 -0.287 1.457 sum -12.514 16.516 0.012 20.721 Atomic orbital electron populations 1.22025 0.94414 1.00895 1.03231 1.21528 0.96981 0.97456 0.97353 1.21725 1.01010 0.93463 1.03228 1.22037 1.00799 0.79119 1.00004 1.47931 1.25178 1.09808 1.49447 1.19238 0.89604 0.89191 0.91562 1.21535 1.13333 1.25199 0.97088 0.95478 1.25837 0.94349 0.95331 1.03108 1.70049 1.18915 1.31199 1.38363 0.85733 0.79539 0.78440 0.79396 1.17361 1.20579 1.18333 1.21303 0.81588 0.89287 0.78470 1.90613 1.74276 1.20364 1.62693 1.22601 0.94658 0.98470 0.98081 0.84547 1.22517 0.98487 1.00721 0.93496 1.23167 0.94518 0.99988 1.00276 1.21956 0.88067 0.96064 0.95678 0.91088 1.58858 1.29469 1.37745 1.11515 1.22122 0.95018 0.99977 0.97405 0.91173 0.94759 0.89952 0.92688 0.92906 0.91209 0.90793 0.87908 0.91689 0.93831 0.96777 0.92270 0.94080 0.88925 0.90362 0.88635 0.83481 0.83694 0.90154 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 7.56 71.98 0.54 -2.45 16 2 C -0.11 -2.69 3.10 -10.79 -0.03 -2.72 16 3 C -0.14 -2.31 9.19 71.98 0.66 -1.65 16 4 C 0.10 3.11 4.83 86.38 0.42 3.53 16 5 N -0.59 -24.76 2.22 -826.16 -1.84 -26.60 16 6 C 0.23 11.48 4.21 85.63 0.36 11.84 16 7 C -0.53 -32.34 9.94 25.60 0.25 -32.09 16 8 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 9 C 0.01 0.70 5.47 84.65 0.46 1.17 16 10 N -0.95 -60.92 13.96 21.45 0.30 -60.62 16 11 Si 0.95 45.67 27.47 68.60 1.88 47.55 16 12 H -0.25 -10.96 7.11 99.48 0.71 -10.26 16 13 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 14 H -0.26 -12.20 6.54 99.48 0.65 -11.55 16 15 C 0.50 21.17 5.86 87.66 0.51 21.68 16 16 O -0.60 -31.79 15.04 -3.04 -0.05 -31.83 16 17 C -0.12 -3.33 1.95 -10.46 -0.02 -3.35 16 18 H 0.14 3.00 3.74 -2.39 -0.01 2.99 16 19 C -0.11 -2.84 5.79 31.89 0.18 -2.66 16 20 C -0.14 -2.44 6.51 31.67 0.21 -2.23 16 21 C 0.09 1.99 4.05 45.71 0.19 2.18 16 22 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 23 N -0.84 -13.52 9.13 -165.39 -1.51 -15.03 16 24 C -0.11 -3.00 6.00 31.39 0.19 -2.81 16 25 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.03 0.88 5.79 -2.39 -0.01 0.86 16 27 H 0.08 1.21 6.92 -2.39 -0.02 1.19 16 28 H 0.05 1.53 7.92 -2.38 -0.02 1.51 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 32 H 0.10 2.52 4.24 -2.39 -0.01 2.51 16 33 H 0.06 2.18 8.13 -2.38 -0.02 2.16 16 34 H 0.04 2.02 7.28 -2.39 -0.02 2.01 16 35 H 0.01 0.79 6.54 -2.39 -0.02 0.77 16 36 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 37 H 0.04 1.32 8.05 -2.39 -0.02 1.30 16 38 H 0.09 1.93 6.20 -2.38 -0.01 1.92 16 39 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.10 1.14 8.03 -2.39 -0.02 1.12 16 41 H 0.35 4.17 9.06 -89.69 -0.81 3.35 16 42 H 0.35 4.44 8.93 -89.69 -0.80 3.64 16 43 H 0.08 2.06 7.89 -2.39 -0.02 2.04 16 44 H 0.05 1.81 6.75 -2.39 -0.02 1.80 16 Total: -1.00 -79.31 333.73 2.05 -77.26 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -0.67 Total: 18.80 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 3.93 Total: -9.54 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -3.05 Total: -102.25 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -0.05 Total: -31.83 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.88 Total: 47.55 kcal Total: -79.31 2.05 -77.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091543702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.239 kcal (2) G-P(sol) polarization free energy of solvation -79.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds