Wall clock time and date at job start Mon Mar 30 2020 05:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46841 * 2 1 4 4 C 1.52998 * 109.47230 * 119.99877 * 2 1 3 5 5 N 1.46502 * 109.46764 * 65.00401 * 4 2 1 6 6 C 1.46505 * 119.99713 * 264.25497 * 5 4 2 7 7 C 1.50705 * 109.46999 * 274.88955 * 6 5 4 8 8 H 1.07998 * 120.00075 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99711 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00286 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99785 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47368 * 89.99850 * 11 9 7 13 13 H 1.48499 * 109.47214 * 210.00307 * 11 9 7 14 14 H 1.48506 * 109.46998 * 330.00214 * 11 9 7 15 15 C 1.34777 * 120.00184 * 84.25773 * 5 4 2 16 16 O 1.21276 * 120.00145 * 2.46244 * 15 5 4 17 17 C 1.50701 * 119.99779 * 182.46169 * 15 5 4 18 18 H 1.09002 * 110.43455 * 319.21565 * 17 15 5 19 19 C 1.54255 * 110.49019 * 81.75941 * 17 15 5 20 20 C 1.53871 * 106.60176 * 142.28650 * 19 17 15 21 21 C 1.54263 * 106.59779 * 359.97438 * 20 19 17 22 22 H 1.09008 * 110.48567 * 95.20175 * 21 20 19 23 23 N 1.46898 * 110.48599 * 217.70913 * 21 20 19 24 24 C 1.54887 * 104.31362 * 336.45803 * 21 20 19 25 25 H 1.09001 * 109.47224 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47111 * 299.99466 * 1 2 3 27 27 H 1.08995 * 109.47752 * 59.99767 * 1 2 3 28 28 H 1.09000 * 109.46607 * 240.00376 * 2 1 3 29 29 H 1.09000 * 109.47072 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46860 * 300.00031 * 3 2 1 31 31 H 1.08995 * 109.47143 * 60.00008 * 3 2 1 32 32 H 1.08998 * 109.47283 * 305.00412 * 4 2 1 33 33 H 1.09005 * 109.46986 * 184.99930 * 4 2 1 34 34 H 1.08995 * 109.46930 * 34.88762 * 6 5 4 35 35 H 1.08995 * 109.46921 * 154.89217 * 6 5 4 36 36 H 0.96996 * 119.99699 * 180.02562 * 10 9 7 37 37 H 1.09002 * 110.03427 * 22.99881 * 19 17 15 38 38 H 1.09006 * 110.03210 * 261.57484 * 19 17 15 39 39 H 1.09007 * 110.03298 * 240.71455 * 20 19 17 40 40 H 1.08997 * 110.03260 * 119.28744 * 20 19 17 41 41 H 1.00898 * 111.00462 * 296.75879 * 23 21 20 42 42 H 1.00897 * 110.99966 * 60.72021 * 23 21 20 43 43 H 1.09000 * 110.75684 * 156.19031 * 24 21 20 44 44 H 1.08994 * 110.75414 * 279.55888 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6525 -2.1328 1.1905 6 6 0.4368 -2.5875 1.8699 7 6 0.7497 -2.8854 3.3137 8 1 1.7536 -2.7491 3.6879 9 6 -0.2459 -3.3307 4.1572 10 7 -1.4685 -3.4962 3.7017 11 14 0.1419 -3.6992 5.9470 12 1 -0.0606 -2.4731 6.7599 13 1 -0.7589 -4.7729 6.4377 14 1 1.5536 -4.1445 6.0661 15 6 2.4144 -3.0131 0.5114 16 8 3.4441 -2.6456 -0.0134 17 6 1.9867 -4.4542 0.4043 18 1 1.5826 -4.8029 1.3547 19 6 0.9455 -4.6262 -0.7207 20 6 1.2535 -5.9706 -1.4030 21 6 2.4716 -6.5683 -0.6692 22 1 2.1471 -7.2624 0.1061 23 7 3.3647 -7.2431 -1.6205 24 6 3.1779 -5.3426 -0.0383 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6054 -0.2618 2.1370 33 1 3.1264 -0.6443 1.2951 34 1 -0.3228 -1.8077 1.8162 35 1 0.0656 -3.4903 1.3849 36 1 -2.1689 -3.8092 4.2953 37 1 1.0357 -3.8128 -1.4407 38 1 -0.0599 -4.6428 -0.2997 39 1 1.4933 -5.8095 -2.4541 40 1 0.3977 -6.6396 -1.3132 41 1 2.9019 -8.0254 -2.0585 42 1 3.7126 -6.5955 -2.3116 43 1 3.7786 -5.6426 0.8203 44 1 3.7900 -4.8265 -0.7779 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091543703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:52 Heat of formation + Delta-G solvation = -68.055946 kcal Electronic energy + Delta-G solvation = -21967.592593 eV Core-core repulsion = 18918.344970 eV Total energy + Delta-G solvation = -3049.247623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.69716 -37.59052 -35.88843 -34.03058 -32.49216 -32.17790 -28.64541 -27.63674 -26.89258 -26.71163 -25.00056 -22.96350 -21.02109 -20.10234 -19.77981 -17.95639 -16.74115 -16.31850 -15.99834 -15.69448 -14.75379 -14.64885 -14.49433 -14.25473 -13.72572 -13.28267 -13.00903 -12.68713 -12.52725 -12.25043 -12.11271 -11.95344 -11.67002 -11.44152 -11.24070 -11.11289 -10.97932 -10.89659 -10.71253 -10.63241 -10.51388 -10.39199 -10.24076 -10.21710 -10.00281 -9.69303 -8.91262 -8.61008 -8.53707 -7.64457 -6.18730 -4.25749 3.22133 3.29504 3.32705 3.44072 3.96553 4.33312 4.60029 4.87541 4.93662 5.14359 5.20925 5.26252 5.33028 5.47344 5.61847 5.67160 5.70646 5.83486 5.89833 5.93659 5.96427 6.02512 6.05173 6.15483 6.18841 6.25488 6.31172 6.39037 6.45276 6.47017 6.55532 6.62852 6.73647 6.77932 6.87896 7.20302 7.23121 7.49331 7.59923 7.76663 8.06848 8.40976 8.80296 9.08027 9.42429 10.87588 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.011154 B = 0.008192 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.799994 B = 3417.007588 C = 5127.005388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.126 3.874 5 N -0.592 5.592 6 C 0.232 3.768 7 C -0.538 4.538 8 H 0.060 0.940 9 C 0.065 3.935 10 N -0.891 5.891 11 Si 0.894 3.106 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.523 3.477 16 O -0.576 6.576 17 C -0.112 4.112 18 H 0.111 0.889 19 C -0.104 4.104 20 C -0.154 4.154 21 C 0.084 3.916 22 H 0.087 0.913 23 N -0.843 5.843 24 C -0.096 4.096 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.039 0.961 35 H 0.042 0.958 36 H 0.265 0.735 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.337 0.663 42 H 0.339 0.661 43 H 0.069 0.931 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.632 -0.260 -8.855 9.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 C -0.199 4.199 4 C 0.002 3.998 5 N -0.321 5.321 6 C 0.113 3.887 7 C -0.577 4.577 8 H 0.078 0.922 9 C -0.137 4.137 10 N -0.530 5.530 11 Si 0.722 3.278 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.312 3.688 16 O -0.457 6.457 17 C -0.134 4.134 18 H 0.129 0.871 19 C -0.143 4.143 20 C -0.194 4.194 21 C -0.027 4.027 22 H 0.105 0.895 23 N -0.371 5.371 24 C -0.134 4.134 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.149 0.851 42 H 0.152 0.848 43 H 0.088 0.912 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.414 -0.279 -8.407 9.078 hybrid contribution -0.868 0.109 0.468 0.992 sum 2.547 -0.169 -7.939 8.339 Atomic orbital electron populations 1.21872 0.95089 1.02409 1.00796 1.21478 0.96230 0.95802 0.99483 1.21746 1.00782 0.96015 1.01346 1.21318 0.99763 0.81626 0.97076 1.48191 1.26821 1.07030 1.50017 1.19571 0.81172 0.96251 0.91752 1.21536 0.96071 1.45366 0.94705 0.92175 1.24922 0.94826 0.95138 0.98851 1.69916 1.01067 1.45974 1.36027 0.86546 0.78443 0.78135 0.84678 1.20545 1.21064 1.19754 1.20332 0.83112 0.87642 0.77756 1.90562 1.25394 1.80323 1.49435 1.22121 0.96876 0.92896 1.01459 0.87058 1.21947 0.99093 0.96684 0.96565 1.22968 0.99591 0.97509 0.99300 1.22364 0.90360 0.95420 0.94579 0.89502 1.58851 1.41470 1.13617 1.23122 1.22384 0.96437 0.93648 1.00945 0.91888 0.92678 0.93767 0.91445 0.92863 0.93072 0.92712 0.90398 0.91540 0.94344 0.93962 0.92573 0.92116 0.90604 0.92275 0.91742 0.85137 0.84792 0.91213 0.90181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.34 37.16 0.31 -1.98 16 2 C -0.11 -1.79 3.08 -90.62 -0.28 -2.07 16 3 C -0.14 -1.89 9.19 37.16 0.34 -1.55 16 4 C 0.13 2.37 4.82 -4.04 -0.02 2.35 16 5 N -0.59 -12.33 2.19 -175.06 -0.38 -12.72 16 6 C 0.23 5.36 4.04 -5.19 -0.02 5.34 16 7 C -0.54 -13.88 9.32 -34.44 -0.32 -14.20 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -24.14 13.29 55.43 0.74 -23.40 16 11 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 15 C 0.52 10.88 6.73 -10.98 -0.07 10.81 16 16 O -0.58 -12.99 15.38 5.56 0.09 -12.90 16 17 C -0.11 -2.04 2.25 -90.03 -0.20 -2.24 16 18 H 0.11 2.24 7.06 -51.93 -0.37 1.87 16 19 C -0.10 -1.66 5.94 -25.62 -0.15 -1.81 16 20 C -0.15 -2.00 6.53 -25.62 -0.17 -2.17 16 21 C 0.08 1.14 4.00 -66.06 -0.26 0.88 16 22 H 0.09 1.19 8.14 -51.92 -0.42 0.77 16 23 N -0.84 -9.85 9.30 -3.26 -0.03 -9.88 16 24 C -0.10 -1.57 5.76 -24.65 -0.14 -1.71 16 25 H 0.06 1.11 6.25 -51.93 -0.32 0.78 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 33 H 0.07 1.28 7.57 -51.93 -0.39 0.89 16 34 H 0.04 0.93 6.45 -51.93 -0.33 0.60 16 35 H 0.04 1.00 5.11 -51.93 -0.27 0.73 16 36 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 37 H 0.06 0.98 7.83 -51.93 -0.41 0.57 16 38 H 0.08 1.25 7.25 -51.93 -0.38 0.87 16 39 H 0.06 0.70 8.00 -51.92 -0.42 0.29 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.34 3.23 9.07 -39.29 -0.36 2.87 16 42 H 0.34 3.74 8.87 -39.29 -0.35 3.39 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.08 1.39 7.18 -51.93 -0.37 1.02 16 LS Contribution 344.53 15.07 5.19 5.19 Total: -1.00 -27.99 344.53 -8.24 -36.22 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -7.73 Total: 8.73 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -1.09 Total: -6.72 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.32 Total: -46.00 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.09 Total: -12.90 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.99 -8.24 -36.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091543703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.831 kcal (2) G-P(sol) polarization free energy of solvation -27.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds