Wall clock time and date at job start Mon Mar 30 2020 05:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47238 * 2 1 4 4 H 1.08993 * 109.46820 * 305.87581 * 3 2 1 5 5 C 1.50696 * 109.47133 * 185.87227 * 3 2 1 6 6 H 1.08001 * 120.00221 * 239.27663 * 5 3 2 7 7 C 1.37881 * 119.99736 * 59.28057 * 5 3 2 8 8 N 1.31521 * 119.99866 * 199.39882 * 7 5 3 9 9 Si 1.86799 * 120.00137 * 19.40074 * 7 5 3 10 10 H 1.48507 * 109.46955 * 86.02852 * 9 7 5 11 11 H 1.48497 * 109.47164 * 206.02587 * 9 7 5 12 12 H 1.48500 * 109.47064 * 326.02834 * 9 7 5 13 13 N 1.46902 * 109.47042 * 65.87387 * 3 2 1 14 14 C 1.46896 * 111.00170 * 253.73832 * 13 3 2 15 15 C 1.52996 * 109.47588 * 184.68341 * 14 13 3 16 16 H 1.09004 * 109.17621 * 305.00266 * 15 14 13 17 17 C 1.53778 * 109.18593 * 185.70066 * 15 14 13 18 18 N 1.45477 * 107.45419 * 293.63275 * 17 15 14 19 19 C 1.46114 * 118.11203 * 177.25560 * 18 17 15 20 20 C 1.54904 * 105.81001 * 152.40303 * 19 18 17 21 21 C 1.55432 * 104.96346 * 355.94851 * 20 19 18 22 22 C 1.48873 * 109.14951 * 297.46956 * 18 17 15 23 23 H 1.09005 * 111.14371 * 305.85532 * 22 18 17 24 24 C 1.52319 * 106.89597 * 67.68430 * 22 18 17 25 25 O 1.42653 * 109.18249 * 64.29023 * 15 14 13 26 26 H 1.08997 * 109.46946 * 57.81691 * 1 2 3 27 27 H 1.08999 * 109.46897 * 177.82599 * 1 2 3 28 28 H 1.09001 * 109.46777 * 297.81627 * 1 2 3 29 29 H 1.08995 * 109.46971 * 240.00036 * 2 1 3 30 30 H 1.09006 * 109.46941 * 119.99935 * 2 1 3 31 31 H 0.96999 * 119.99633 * 179.97438 * 8 7 5 32 32 H 1.00905 * 111.00248 * 17.68731 * 13 3 2 33 33 H 1.09005 * 109.46883 * 304.68027 * 14 13 3 34 34 H 1.08999 * 109.47235 * 64.68268 * 14 13 3 35 35 H 1.08998 * 109.85936 * 53.12401 * 17 15 14 36 36 H 1.08999 * 109.85936 * 174.07606 * 17 15 14 37 37 H 1.08999 * 110.17985 * 271.49370 * 19 18 17 38 38 H 1.09004 * 110.17483 * 33.31781 * 19 18 17 39 39 H 1.08997 * 110.34548 * 237.07436 * 20 19 18 40 40 H 1.09001 * 110.34190 * 114.81639 * 20 19 18 41 41 H 1.08997 * 110.92861 * 219.52097 * 21 20 19 42 42 H 1.09004 * 110.93128 * 95.84923 * 21 20 19 43 43 H 1.09003 * 109.91427 * 58.15117 * 24 22 18 44 44 H 1.08998 * 109.91707 * 179.23140 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5934 1.9857 -0.8327 5 6 3.5400 1.4450 -0.1454 6 1 4.1559 1.8960 0.6186 7 6 4.1261 0.8715 -1.2538 8 7 5.3948 0.5263 -1.2224 9 14 3.1182 0.5848 -2.8002 10 1 3.1297 1.8140 -3.6335 11 1 3.7039 -0.5413 -3.5711 12 1 1.7199 0.2538 -2.4254 13 7 1.6696 2.0929 1.2640 14 6 0.5740 3.0504 1.0621 15 6 0.2952 3.7902 2.3719 16 1 0.1005 3.0625 3.1597 17 6 -0.9425 4.6851 2.1933 18 7 -0.5959 5.7230 1.2347 19 6 -1.6339 6.6746 0.8448 20 6 -0.8887 7.9745 0.4518 21 6 0.6079 7.6873 0.7580 22 6 0.5096 6.5512 1.7899 23 1 0.2531 6.9396 2.7756 24 6 1.7444 5.6611 1.8457 25 8 1.4387 4.5671 2.7240 26 1 -0.3633 0.5473 -0.8697 27 1 -0.3633 -1.0269 -0.0390 28 1 -0.3633 0.4796 0.9089 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.8070 0.1225 -2.0021 32 1 1.4273 1.4089 1.9652 33 1 0.8565 3.7686 0.2922 34 1 -0.3227 2.5158 0.7489 35 1 -1.7755 4.0935 1.8137 36 1 -1.2138 5.1366 3.1476 37 1 -2.1953 6.2907 -0.0069 38 1 -2.3042 6.8641 1.6833 39 1 -1.2445 8.8116 1.0524 40 1 -1.0250 8.1834 -0.6093 41 1 1.0923 8.5637 1.1886 42 1 1.1319 7.3552 -0.1382 43 1 1.9757 5.2841 0.8494 44 1 2.5918 6.2258 2.2346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091668239.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:23 Heat of formation + Delta-G solvation = -28.514580 kcal Electronic energy + Delta-G solvation = -22024.147024 eV Core-core repulsion = 18976.614043 eV Total energy + Delta-G solvation = -3047.532981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.26426 -37.25928 -36.10062 -33.18138 -32.16222 -31.20913 -30.12872 -28.75818 -27.08450 -24.75487 -23.95637 -22.35566 -21.67369 -21.00820 -19.87948 -19.28478 -16.66877 -16.51750 -15.95091 -15.61849 -15.31557 -14.84007 -14.46841 -14.26584 -13.88656 -13.70962 -13.36834 -12.90509 -12.71022 -12.61235 -12.47959 -11.85544 -11.77783 -11.62796 -11.39855 -11.32459 -11.19984 -10.90796 -10.80941 -10.75012 -10.57941 -10.37223 -10.04016 -9.83482 -9.48380 -9.22154 -9.12322 -8.31896 -8.22694 -7.13597 -5.98597 -3.86087 3.33688 3.42370 3.45407 3.78933 4.08241 4.44388 4.51546 4.65665 4.76645 4.88566 5.07943 5.19153 5.27249 5.27812 5.34498 5.41300 5.56330 5.57936 5.68484 5.72172 5.73560 5.79913 5.81675 5.88961 5.90532 5.99955 6.06546 6.07577 6.14540 6.29409 6.52090 6.59543 6.71455 6.81550 6.84155 6.96796 7.14999 7.28036 7.62351 7.88941 8.09535 8.49875 8.84919 9.23615 9.70961 11.15110 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021805 B = 0.005379 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.811844 B = 5203.916460 C = 5444.140398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.151 4.151 3 C 0.196 3.804 4 H 0.017 0.983 5 C -0.497 4.497 6 H 0.080 0.920 7 C 0.072 3.928 8 N -0.893 5.893 9 Si 0.853 3.147 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.254 1.254 13 N -0.664 5.664 14 C 0.040 3.960 15 C 0.104 3.896 16 H 0.097 0.903 17 C 0.033 3.967 18 N -0.536 5.536 19 C 0.052 3.948 20 C -0.126 4.126 21 C -0.114 4.114 22 C 0.029 3.971 23 H 0.058 0.942 24 C 0.079 3.921 25 O -0.365 6.365 26 H 0.043 0.957 27 H 0.040 0.960 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.261 0.739 32 H 0.323 0.677 33 H 0.080 0.920 34 H 0.021 0.979 35 H 0.081 0.919 36 H 0.037 0.963 37 H 0.077 0.923 38 H 0.035 0.965 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.975 11.751 5.167 19.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.190 4.190 3 C 0.087 3.913 4 H 0.034 0.966 5 C -0.535 4.535 6 H 0.098 0.902 7 C -0.130 4.130 8 N -0.531 5.531 9 Si 0.681 3.319 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.179 1.179 13 N -0.293 5.293 14 C -0.090 4.090 15 C 0.045 3.955 16 H 0.114 0.886 17 C -0.096 4.096 18 N -0.262 5.262 19 C -0.076 4.076 20 C -0.164 4.164 21 C -0.152 4.152 22 C -0.079 4.079 23 H 0.076 0.924 24 C 0.002 3.998 25 O -0.283 6.283 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.140 0.860 33 H 0.099 0.901 34 H 0.039 0.961 35 H 0.100 0.900 36 H 0.055 0.945 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.110 11.812 4.746 19.003 hybrid contribution -1.831 -0.403 -0.690 1.998 sum -15.941 11.408 4.056 20.018 Atomic orbital electron populations 1.21920 0.98637 1.00040 1.00410 1.22644 0.92633 1.01655 1.02115 1.19506 0.96603 0.88094 0.87073 0.96570 1.21025 0.89377 1.36473 1.06613 0.90156 1.24895 0.94705 0.94813 0.98545 1.70028 1.12570 1.41007 1.29505 0.87449 0.82029 0.77755 0.84686 1.20802 1.21691 1.17857 1.60498 1.37936 1.20256 1.10654 1.22515 0.93212 0.96186 0.97125 1.22251 0.84102 0.91374 0.97792 0.88554 1.22660 0.99079 0.94192 0.93637 1.62691 1.09391 1.12943 1.41147 1.22478 0.93559 0.91825 0.99711 1.22645 0.95379 0.96579 1.01847 1.22313 0.96259 0.97264 0.99364 1.23343 0.94015 0.93677 0.96831 0.92445 1.22489 0.94482 0.86551 0.96320 1.87905 1.46404 1.43414 1.50540 0.93752 0.94063 0.93705 0.91907 0.92344 0.92954 0.86006 0.90130 0.96070 0.90048 0.94455 0.90512 0.94718 0.91675 0.90915 0.90969 0.90088 0.90996 0.88983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.11 37.16 0.34 -2.36 16 2 C -0.15 -3.28 4.48 -26.73 -0.12 -3.40 16 3 C 0.20 4.65 1.75 -68.86 -0.12 4.53 16 4 H 0.02 0.41 6.50 -51.93 -0.34 0.07 16 5 C -0.50 -14.23 9.30 -34.44 -0.32 -14.55 16 6 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 7 C 0.07 2.09 5.26 -17.82 -0.09 2.00 16 8 N -0.89 -27.65 13.96 55.43 0.77 -26.87 16 9 Si 0.85 21.40 25.82 -169.99 -4.39 17.01 16 10 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.25 -5.96 5.46 56.52 0.31 -5.65 16 13 N -0.66 -13.78 5.97 -107.96 -0.64 -14.42 16 14 C 0.04 0.70 4.30 -3.83 -0.02 0.68 16 15 C 0.10 1.56 3.45 -26.33 -0.09 1.46 16 16 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 17 C 0.03 0.42 5.47 -4.19 -0.02 0.40 16 18 N -0.54 -6.82 4.14 -225.06 -0.93 -7.75 16 19 C 0.05 0.54 6.89 -3.25 -0.02 0.52 16 20 C -0.13 -1.15 6.99 -24.43 -0.17 -1.32 16 21 C -0.11 -1.17 6.63 -25.03 -0.17 -1.34 16 22 C 0.03 0.36 2.78 -66.55 -0.19 0.18 16 23 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 24 C 0.08 1.17 6.31 36.81 0.23 1.40 16 25 O -0.36 -6.19 10.41 -35.23 -0.37 -6.56 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.71 6.43 -51.93 -0.33 0.38 16 29 H 0.06 1.46 4.50 -51.93 -0.23 1.23 16 30 H 0.06 1.25 8.04 -51.93 -0.42 0.84 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.32 6.26 7.82 -39.29 -0.31 5.95 16 33 H 0.08 1.57 6.25 -51.93 -0.32 1.25 16 34 H 0.02 0.36 6.52 -51.93 -0.34 0.02 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.04 0.44 8.10 -51.93 -0.42 0.02 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.03 0.34 8.07 -51.93 -0.42 -0.08 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 43 H 0.07 1.23 6.79 -51.93 -0.35 0.88 16 44 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 327.57 15.07 4.94 4.94 Total: -1.00 -31.14 327.57 -9.16 -40.31 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -7.78 Total: 5.17 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -0.76 Total: -11.81 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -0.80 Total: -49.05 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.37 Total: -6.56 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.39 Total: 17.01 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.14 -9.16 -40.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091668239.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.792 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds