Wall clock time and date at job start Mon Mar 30 2020 05:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47238 * 2 1 4 4 H 1.08993 * 109.46820 * 305.87581 * 3 2 1 5 5 C 1.50696 * 109.47133 * 185.87227 * 3 2 1 6 6 H 1.08001 * 120.00221 * 239.27663 * 5 3 2 7 7 C 1.37881 * 119.99736 * 59.28057 * 5 3 2 8 8 N 1.31521 * 119.99866 * 199.39882 * 7 5 3 9 9 Si 1.86799 * 120.00137 * 19.40074 * 7 5 3 10 10 H 1.48507 * 109.46955 * 86.02852 * 9 7 5 11 11 H 1.48497 * 109.47164 * 206.02587 * 9 7 5 12 12 H 1.48500 * 109.47064 * 326.02834 * 9 7 5 13 13 N 1.46902 * 109.47042 * 65.87387 * 3 2 1 14 14 C 1.46896 * 111.00170 * 253.73832 * 13 3 2 15 15 C 1.52996 * 109.47588 * 184.68341 * 14 13 3 16 16 H 1.09004 * 109.17621 * 305.00266 * 15 14 13 17 17 C 1.53778 * 109.18593 * 185.70066 * 15 14 13 18 18 N 1.45477 * 107.45419 * 293.63275 * 17 15 14 19 19 C 1.46114 * 118.11203 * 177.25560 * 18 17 15 20 20 C 1.54904 * 105.81001 * 152.40303 * 19 18 17 21 21 C 1.55432 * 104.96346 * 355.94851 * 20 19 18 22 22 C 1.48873 * 109.14951 * 297.46956 * 18 17 15 23 23 H 1.09005 * 111.14371 * 305.85532 * 22 18 17 24 24 C 1.52319 * 106.89597 * 67.68430 * 22 18 17 25 25 O 1.42653 * 109.18249 * 64.29023 * 15 14 13 26 26 H 1.08997 * 109.46946 * 57.81691 * 1 2 3 27 27 H 1.08999 * 109.46897 * 177.82599 * 1 2 3 28 28 H 1.09001 * 109.46777 * 297.81627 * 1 2 3 29 29 H 1.08995 * 109.46971 * 240.00036 * 2 1 3 30 30 H 1.09006 * 109.46941 * 119.99935 * 2 1 3 31 31 H 0.96999 * 119.99633 * 179.97438 * 8 7 5 32 32 H 1.00905 * 111.00248 * 17.68731 * 13 3 2 33 33 H 1.09005 * 109.46883 * 304.68027 * 14 13 3 34 34 H 1.08999 * 109.47235 * 64.68268 * 14 13 3 35 35 H 1.08998 * 109.85936 * 53.12401 * 17 15 14 36 36 H 1.08999 * 109.85936 * 174.07606 * 17 15 14 37 37 H 1.08999 * 110.17985 * 271.49370 * 19 18 17 38 38 H 1.09004 * 110.17483 * 33.31781 * 19 18 17 39 39 H 1.08997 * 110.34548 * 237.07436 * 20 19 18 40 40 H 1.09001 * 110.34190 * 114.81639 * 20 19 18 41 41 H 1.08997 * 110.92861 * 219.52097 * 21 20 19 42 42 H 1.09004 * 110.93128 * 95.84923 * 21 20 19 43 43 H 1.09003 * 109.91427 * 58.15117 * 24 22 18 44 44 H 1.08998 * 109.91707 * 179.23140 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5934 1.9857 -0.8327 5 6 3.5400 1.4450 -0.1454 6 1 4.1559 1.8960 0.6186 7 6 4.1261 0.8715 -1.2538 8 7 5.3948 0.5263 -1.2224 9 14 3.1182 0.5848 -2.8002 10 1 3.1297 1.8140 -3.6335 11 1 3.7039 -0.5413 -3.5711 12 1 1.7199 0.2538 -2.4254 13 7 1.6696 2.0929 1.2640 14 6 0.5740 3.0504 1.0621 15 6 0.2952 3.7902 2.3719 16 1 0.1005 3.0625 3.1597 17 6 -0.9425 4.6851 2.1933 18 7 -0.5959 5.7230 1.2347 19 6 -1.6339 6.6746 0.8448 20 6 -0.8887 7.9745 0.4518 21 6 0.6079 7.6873 0.7580 22 6 0.5096 6.5512 1.7899 23 1 0.2531 6.9396 2.7756 24 6 1.7444 5.6611 1.8457 25 8 1.4387 4.5671 2.7240 26 1 -0.3633 0.5473 -0.8697 27 1 -0.3633 -1.0269 -0.0390 28 1 -0.3633 0.4796 0.9089 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.8070 0.1225 -2.0021 32 1 1.4273 1.4089 1.9652 33 1 0.8565 3.7686 0.2922 34 1 -0.3227 2.5158 0.7489 35 1 -1.7755 4.0935 1.8137 36 1 -1.2138 5.1366 3.1476 37 1 -2.1953 6.2907 -0.0069 38 1 -2.3042 6.8641 1.6833 39 1 -1.2445 8.8116 1.0524 40 1 -1.0250 8.1834 -0.6093 41 1 1.0923 8.5637 1.1886 42 1 1.1319 7.3552 -0.1382 43 1 1.9757 5.2841 0.8494 44 1 2.5918 6.2258 2.2346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091668239.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:23 Heat of formation + Delta-G solvation = -51.930159 kcal Electronic energy + Delta-G solvation = -22025.162400 eV Core-core repulsion = 18976.614043 eV Total energy + Delta-G solvation = -3048.548357 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.30474 -38.63658 -37.53338 -34.64544 -33.94352 -32.65493 -31.12099 -30.11081 -28.73050 -26.03611 -25.21658 -23.99930 -22.84494 -21.80676 -21.69343 -20.45223 -18.72146 -17.73736 -17.08249 -16.78762 -16.66202 -16.32428 -15.84246 -15.64982 -15.36350 -14.86759 -14.66599 -14.52965 -14.21018 -13.81961 -13.51784 -13.41914 -13.32863 -12.99056 -12.72944 -12.60633 -12.39641 -12.34328 -12.07469 -12.04262 -11.98400 -11.64003 -11.52400 -11.38127 -11.19964 -11.16080 -10.55745 -10.34671 -9.24782 -8.81389 -8.25724 -6.18177 1.33063 1.37509 1.45476 2.37722 2.81358 2.98649 3.06263 3.51617 3.62782 3.81999 3.90954 4.12378 4.19397 4.22949 4.27507 4.32342 4.33882 4.40254 4.49254 4.59232 4.60951 4.67488 4.68335 4.73961 4.86486 4.87591 4.91298 5.00577 5.03434 5.10146 5.16527 5.22466 5.24017 5.27879 5.31947 5.53913 5.78572 5.90319 6.13686 6.26797 6.41469 6.79103 6.86418 6.93570 7.43566 8.92182 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021805 B = 0.005379 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.811844 B = 5203.916460 C = 5444.140398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.149 4.149 3 C 0.204 3.796 4 H 0.011 0.989 5 C -0.506 4.506 6 H 0.027 0.973 7 C 0.016 3.984 8 N -0.943 5.943 9 Si 0.922 3.078 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.224 1.224 13 N -0.680 5.680 14 C 0.049 3.951 15 C 0.103 3.897 16 H 0.109 0.891 17 C 0.042 3.958 18 N -0.556 5.556 19 C 0.051 3.949 20 C -0.120 4.120 21 C -0.113 4.113 22 C 0.036 3.964 23 H 0.064 0.936 24 C 0.077 3.923 25 O -0.390 6.390 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.263 0.737 32 H 0.332 0.668 33 H 0.056 0.944 34 H 0.039 0.961 35 H 0.096 0.904 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.046 0.954 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.040 0.960 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.453 12.329 4.982 22.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.188 4.188 3 C 0.095 3.905 4 H 0.029 0.971 5 C -0.545 4.545 6 H 0.045 0.955 7 C -0.181 4.181 8 N -0.584 5.584 9 Si 0.747 3.253 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.147 1.147 13 N -0.310 5.310 14 C -0.080 4.080 15 C 0.044 3.956 16 H 0.126 0.874 17 C -0.087 4.087 18 N -0.282 5.282 19 C -0.076 4.076 20 C -0.158 4.158 21 C -0.151 4.151 22 C -0.072 4.072 23 H 0.082 0.918 24 C 0.000 4.000 25 O -0.308 6.308 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.150 0.850 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.083 0.917 43 H 0.058 0.942 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.624 12.401 4.577 22.031 hybrid contribution -0.640 -0.547 -0.533 0.997 sum -18.264 11.854 4.044 22.146 Atomic orbital electron populations 1.21818 0.94886 1.01929 1.01424 1.22482 0.95916 0.99277 1.01150 1.19254 0.93160 0.89901 0.88222 0.97133 1.21305 0.92045 1.35690 1.05412 0.95462 1.25732 0.95842 0.94635 1.01908 1.70172 1.14855 1.42728 1.30616 0.86331 0.81790 0.77551 0.79675 1.20739 1.21400 1.14737 1.60291 1.40325 1.20760 1.09645 1.22446 0.92401 0.95035 0.98145 1.22358 0.84779 0.91848 0.96610 0.87361 1.22551 0.97807 0.93986 0.94381 1.62666 1.10367 1.13757 1.41424 1.22551 0.93199 0.91743 1.00154 1.22646 0.93920 0.96607 1.02659 1.22322 0.97488 0.97113 0.98200 1.23218 0.92579 0.93633 0.97752 0.91775 1.22498 0.96489 0.86699 0.94332 1.87860 1.47601 1.44255 1.51127 0.93564 0.91698 0.91945 0.93508 0.92823 0.92824 0.85037 0.92536 0.94323 0.88558 0.93300 0.90321 0.93553 0.89806 0.90290 0.89203 0.91678 0.94202 0.88297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.54 9.11 71.98 0.66 -3.89 16 2 C -0.15 -6.23 4.48 30.60 0.14 -6.09 16 3 C 0.20 9.69 1.75 44.17 0.08 9.76 16 4 H 0.01 0.53 6.50 -2.39 -0.02 0.51 16 5 C -0.51 -30.17 9.30 25.60 0.24 -29.93 16 6 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 7 C 0.02 0.96 5.26 84.65 0.45 1.40 16 8 N -0.94 -60.65 13.96 21.45 0.30 -60.35 16 9 Si 0.92 44.61 25.82 68.60 1.77 46.39 16 10 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 11 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 12 H -0.22 -9.72 5.46 99.48 0.54 -9.18 16 13 N -0.68 -28.29 5.97 -495.46 -2.96 -31.25 16 14 C 0.05 1.68 4.30 86.30 0.37 2.05 16 15 C 0.10 2.95 3.45 30.86 0.11 3.05 16 16 H 0.11 2.81 8.14 -2.38 -0.02 2.79 16 17 C 0.04 0.94 5.47 86.83 0.48 1.42 16 18 N -0.56 -13.09 4.14 -865.94 -3.59 -16.68 16 19 C 0.05 0.91 6.89 87.10 0.60 1.51 16 20 C -0.12 -1.86 6.99 32.08 0.22 -1.63 16 21 C -0.11 -2.15 6.63 31.70 0.21 -1.94 16 22 C 0.04 0.85 2.78 44.57 0.12 0.97 16 23 H 0.06 1.43 8.10 -2.38 -0.02 1.42 16 24 C 0.08 2.32 6.31 71.76 0.45 2.78 16 25 O -0.39 -13.27 10.41 -148.98 -1.55 -14.82 16 26 H 0.05 1.45 8.14 -2.39 -0.02 1.44 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.06 1.75 6.43 -2.39 -0.02 1.74 16 29 H 0.05 2.09 4.50 -2.39 -0.01 2.07 16 30 H 0.05 2.26 8.04 -2.38 -0.02 2.24 16 31 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 32 H 0.33 12.66 7.82 -89.69 -0.70 11.96 16 33 H 0.06 2.22 6.25 -2.38 -0.01 2.20 16 34 H 0.04 1.19 6.52 -2.39 -0.02 1.17 16 35 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.05 0.74 8.07 -2.38 -0.02 0.72 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.06 1.44 8.12 -2.39 -0.02 1.42 16 43 H 0.04 1.45 6.79 -2.39 -0.02 1.43 16 44 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -70.32 327.57 -1.81 -72.12 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.10 Total: 25.12 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: 4.12 Total: -20.54 kcal Atomic # 7 Polarization: -102.03 SS G_CDS: -6.25 Total: -108.28 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -1.55 Total: -14.82 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.77 Total: 46.39 kcal Total: -70.32 -1.81 -72.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091668239.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.194 kcal (2) G-P(sol) polarization free energy of solvation -70.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds