Wall clock time and date at job start Mon Mar 30 2020 05:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46892 * 2 1 4 4 C 1.52996 * 109.47061 * 120.00545 * 2 1 3 5 5 N 1.46505 * 109.46803 * 174.27245 * 4 2 1 6 6 C 1.46493 * 120.00350 * 277.33929 * 5 4 2 7 7 C 1.50693 * 109.47476 * 270.00166 * 6 5 4 8 8 H 1.08003 * 119.99822 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00371 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00000 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00330 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46817 * 0.02562 * 11 9 7 13 13 H 1.48492 * 109.47185 * 119.99780 * 11 9 7 14 14 H 1.48500 * 109.47165 * 240.00073 * 11 9 7 15 15 C 1.34780 * 119.99492 * 97.34094 * 5 4 2 16 16 O 1.21279 * 119.99793 * 175.92204 * 15 5 4 17 17 C 1.50702 * 120.00442 * 355.92027 * 15 5 4 18 18 C 1.52994 * 109.47087 * 186.80268 * 17 15 5 19 19 N 1.46898 * 112.85191 * 54.34747 * 18 17 15 20 20 C 1.53789 * 113.61103 * 185.54151 * 18 17 15 21 21 C 1.53782 * 87.07941 * 139.98068 * 20 18 17 22 22 C 1.53783 * 87.17298 * 334.52380 * 21 20 18 23 23 H 1.09000 * 109.47079 * 299.99565 * 1 2 3 24 24 H 1.08997 * 109.47248 * 59.99524 * 1 2 3 25 25 H 1.09000 * 109.46931 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46256 * 240.00658 * 2 1 3 27 27 H 1.09003 * 109.46720 * 59.99588 * 3 2 1 28 28 H 1.09005 * 109.46744 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47518 * 299.99336 * 3 2 1 30 30 H 1.08999 * 109.47552 * 54.27622 * 4 2 1 31 31 H 1.09001 * 109.47092 * 294.27508 * 4 2 1 32 32 H 1.09005 * 109.46958 * 30.00383 * 6 5 4 33 33 H 1.09000 * 109.47526 * 149.99809 * 6 5 4 34 34 H 0.97005 * 120.00158 * 179.97438 * 10 9 7 35 35 H 1.09004 * 109.46810 * 66.79890 * 17 15 5 36 36 H 1.09004 * 109.47064 * 306.80614 * 17 15 5 37 37 H 1.00896 * 110.99950 * 316.25166 * 19 18 17 38 38 H 1.00897 * 110.99975 * 80.20656 * 19 18 17 39 39 H 1.08996 * 113.61438 * 25.42875 * 20 18 17 40 40 H 1.09002 * 113.68832 * 254.53699 * 20 18 17 41 41 H 1.09002 * 113.61629 * 89.11540 * 21 20 18 42 42 H 1.09005 * 113.60955 * 219.93384 * 21 20 18 43 43 H 1.09001 * 113.60915 * 140.02391 * 22 21 20 44 44 H 1.09005 * 113.61449 * 270.92470 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.4986 -0.8418 1.1821 6 6 4.1092 -1.9308 0.4159 7 6 4.3038 -3.1274 1.3110 8 1 4.0030 -3.0812 2.3472 9 6 4.8657 -4.2812 0.8071 10 7 5.2324 -4.3374 -0.4546 11 14 5.1076 -5.7643 1.9169 12 1 4.6168 -5.4462 3.2819 13 1 4.3464 -6.9180 1.3742 14 1 6.5511 -6.1076 1.9768 15 6 4.2785 0.0493 1.8256 16 8 5.4830 -0.0924 1.8319 17 6 3.6541 1.2218 2.5372 18 6 4.7543 2.1616 3.0342 19 7 5.6684 2.5855 1.9653 20 6 4.2296 3.3244 3.8932 21 6 5.4599 3.1125 4.7912 22 6 5.4734 1.6556 4.2991 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 1.6765 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.5955 -1.7152 1.3018 31 1 1.7628 -0.1518 2.1362 32 1 3.4571 -2.2007 -0.4149 33 1 5.0749 -1.6058 0.0288 34 1 5.6281 -5.1491 -0.8090 35 1 3.0715 0.8634 3.3859 36 1 3.0011 1.7587 1.8491 37 1 5.9231 1.8062 1.3771 38 1 5.2657 3.3332 1.4205 39 1 3.2839 3.1081 4.3900 40 1 4.2265 4.2840 3.3762 41 1 6.3323 3.6868 4.4792 42 1 5.2460 3.2121 5.8554 43 1 6.4743 1.2684 4.1087 44 1 4.8671 0.9839 4.9069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094294719.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:53 Heat of formation + Delta-G solvation = -26.443898 kcal Electronic energy + Delta-G solvation = -22062.649879 eV Core-core repulsion = 19015.206690 eV Total energy + Delta-G solvation = -3047.443190 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.03191 -38.26657 -36.29925 -33.72270 -32.28120 -31.64542 -29.59631 -27.33131 -27.00551 -25.50436 -25.46048 -23.44806 -21.96588 -20.28472 -18.66758 -18.12937 -16.62339 -16.46564 -15.70327 -15.25449 -15.19399 -14.82073 -14.47156 -14.36970 -13.92079 -13.35098 -13.24207 -12.95719 -12.59244 -12.34016 -12.17736 -12.02946 -11.76594 -11.67172 -11.29676 -11.14701 -10.94560 -10.93221 -10.78112 -10.63408 -10.56925 -10.51404 -10.18119 -10.13006 -10.00690 -9.58900 -8.80038 -8.43939 -8.33459 -7.63355 -6.04388 -4.08566 3.29451 3.36614 3.39185 3.43985 3.92530 4.44693 4.63088 4.69490 4.86992 4.99847 5.07225 5.11237 5.11638 5.18500 5.29688 5.47159 5.56402 5.62525 5.65106 5.68630 5.79518 5.80309 5.87071 5.92902 5.93777 6.01202 6.01730 6.14208 6.22650 6.38507 6.47760 6.50442 6.54887 6.56249 7.06658 7.42101 7.52178 7.58155 7.84955 7.92392 8.24047 8.44027 8.91221 9.11540 9.56685 11.03674 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015166 B = 0.006606 C = 0.005116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.779024 B = 4237.704855 C = 5471.978196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.148 4.148 4 C 0.116 3.884 5 N -0.595 5.595 6 C 0.247 3.753 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.897 3.103 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.505 3.495 16 O -0.534 6.534 17 C -0.183 4.183 18 C 0.116 3.884 19 N -0.825 5.825 20 C -0.134 4.134 21 C -0.130 4.130 22 C -0.120 4.120 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.030 0.970 33 H 0.041 0.959 34 H 0.262 0.738 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.362 0.638 38 H 0.328 0.672 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.076 0.924 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.763 14.012 4.364 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 C -0.205 4.205 4 C -0.009 4.009 5 N -0.326 5.326 6 C 0.128 3.872 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.535 5.535 11 Si 0.724 3.276 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.292 3.708 16 O -0.412 6.412 17 C -0.225 4.225 18 C 0.022 3.978 19 N -0.360 5.360 20 C -0.172 4.172 21 C -0.168 4.168 22 C -0.158 4.158 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.182 0.818 38 H 0.140 0.860 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.514 13.953 4.791 16.556 hybrid contribution -0.794 -1.370 -0.156 1.591 sum -8.308 12.583 4.635 15.775 Atomic orbital electron populations 1.21761 0.95002 1.01905 1.01360 1.21563 0.95465 0.96360 1.00250 1.22036 1.01285 0.96237 1.00971 1.21522 0.81891 1.00997 0.96462 1.48250 1.05204 1.28874 1.50304 1.19230 0.94157 0.83138 0.90684 1.21450 1.40720 0.97112 0.96838 0.92541 1.24926 0.95289 0.98776 0.95122 1.69938 1.42133 1.28168 1.13221 0.86465 0.77964 0.82383 0.80746 1.19855 1.21010 1.20865 1.20346 0.87416 0.83374 0.79646 1.90615 1.14372 1.75522 1.60666 1.22879 1.00630 0.96976 1.02037 1.21596 0.90617 0.93525 0.92039 1.58773 1.43885 1.15446 1.17921 1.23082 0.98110 0.97880 0.98134 1.22692 0.98218 0.97852 0.98017 1.22912 1.01951 0.95600 0.95354 0.92904 0.92818 0.92394 0.90393 0.92614 0.92531 0.92909 0.90276 0.91617 0.95196 0.94081 0.92820 0.89454 0.88329 0.81762 0.85976 0.90198 0.91577 0.89910 0.92404 0.90527 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.19 37.16 0.34 -1.18 16 2 C -0.12 -1.57 3.10 -90.62 -0.28 -1.85 16 3 C -0.15 -1.78 7.47 37.16 0.28 -1.50 16 4 C 0.12 1.84 4.88 -4.04 -0.02 1.82 16 5 N -0.60 -12.15 2.23 -175.06 -0.39 -12.54 16 6 C 0.25 6.36 5.15 -5.20 -0.03 6.33 16 7 C -0.52 -14.80 9.39 -34.45 -0.32 -15.12 16 8 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 11 Si 0.90 22.06 29.54 -169.99 -5.02 17.03 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 C 0.51 10.03 6.19 -10.98 -0.07 9.96 16 16 O -0.53 -12.75 13.33 5.56 0.07 -12.68 16 17 C -0.18 -2.68 3.57 -27.88 -0.10 -2.78 16 18 C 0.12 1.65 0.92 -130.65 -0.12 1.53 16 19 N -0.82 -12.32 9.29 1.51 0.01 -12.31 16 20 C -0.13 -1.52 7.40 -25.91 -0.19 -1.71 16 21 C -0.13 -1.59 7.99 -25.92 -0.21 -1.79 16 22 C -0.12 -1.81 6.97 -25.78 -0.18 -1.99 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.08 1.21 7.95 -51.93 -0.41 0.80 16 27 H 0.06 0.58 6.64 -51.93 -0.34 0.23 16 28 H 0.06 0.79 6.24 -51.93 -0.32 0.47 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 1.34 8.12 -51.93 -0.42 0.91 16 31 H 0.07 0.89 6.38 -51.93 -0.33 0.56 16 32 H 0.03 0.78 7.88 -51.93 -0.41 0.37 16 33 H 0.04 1.19 7.48 -51.93 -0.39 0.81 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.09 1.19 7.56 -51.93 -0.39 0.80 16 36 H 0.10 1.24 3.68 -51.93 -0.19 1.05 16 37 H 0.36 6.44 6.20 -39.29 -0.24 6.20 16 38 H 0.33 4.10 9.03 -39.29 -0.35 3.74 16 39 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.07 1.09 8.05 -51.93 -0.42 0.67 16 LS Contribution 341.24 15.07 5.14 5.14 Total: -1.00 -31.36 341.24 -8.02 -39.38 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -7.58 Total: 8.52 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -1.00 Total: -6.65 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.36 Total: -50.75 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.07 Total: -12.68 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.36 -8.02 -39.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094294719.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.939 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds