Wall clock time and date at job start Mon Mar 30 2020 05:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46892 * 2 1 4 4 C 1.52996 * 109.47061 * 120.00545 * 2 1 3 5 5 N 1.46505 * 109.46803 * 174.27245 * 4 2 1 6 6 C 1.46493 * 120.00350 * 277.33929 * 5 4 2 7 7 C 1.50693 * 109.47476 * 270.00166 * 6 5 4 8 8 H 1.08003 * 119.99822 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00371 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00000 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00330 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46817 * 0.02562 * 11 9 7 13 13 H 1.48492 * 109.47185 * 119.99780 * 11 9 7 14 14 H 1.48500 * 109.47165 * 240.00073 * 11 9 7 15 15 C 1.34780 * 119.99492 * 97.34094 * 5 4 2 16 16 O 1.21279 * 119.99793 * 175.92204 * 15 5 4 17 17 C 1.50702 * 120.00442 * 355.92027 * 15 5 4 18 18 C 1.52994 * 109.47087 * 186.80268 * 17 15 5 19 19 N 1.46898 * 112.85191 * 54.34747 * 18 17 15 20 20 C 1.53789 * 113.61103 * 185.54151 * 18 17 15 21 21 C 1.53782 * 87.07941 * 139.98068 * 20 18 17 22 22 C 1.53783 * 87.17298 * 334.52380 * 21 20 18 23 23 H 1.09000 * 109.47079 * 299.99565 * 1 2 3 24 24 H 1.08997 * 109.47248 * 59.99524 * 1 2 3 25 25 H 1.09000 * 109.46931 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46256 * 240.00658 * 2 1 3 27 27 H 1.09003 * 109.46720 * 59.99588 * 3 2 1 28 28 H 1.09005 * 109.46744 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47518 * 299.99336 * 3 2 1 30 30 H 1.08999 * 109.47552 * 54.27622 * 4 2 1 31 31 H 1.09001 * 109.47092 * 294.27508 * 4 2 1 32 32 H 1.09005 * 109.46958 * 30.00383 * 6 5 4 33 33 H 1.09000 * 109.47526 * 149.99809 * 6 5 4 34 34 H 0.97005 * 120.00158 * 179.97438 * 10 9 7 35 35 H 1.09004 * 109.46810 * 66.79890 * 17 15 5 36 36 H 1.09004 * 109.47064 * 306.80614 * 17 15 5 37 37 H 1.00896 * 110.99950 * 316.25166 * 19 18 17 38 38 H 1.00897 * 110.99975 * 80.20656 * 19 18 17 39 39 H 1.08996 * 113.61438 * 25.42875 * 20 18 17 40 40 H 1.09002 * 113.68832 * 254.53699 * 20 18 17 41 41 H 1.09002 * 113.61629 * 89.11540 * 21 20 18 42 42 H 1.09005 * 113.60955 * 219.93384 * 21 20 18 43 43 H 1.09001 * 113.60915 * 140.02391 * 22 21 20 44 44 H 1.09005 * 113.61449 * 270.92470 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.4986 -0.8418 1.1821 6 6 4.1092 -1.9308 0.4159 7 6 4.3038 -3.1274 1.3110 8 1 4.0030 -3.0812 2.3472 9 6 4.8657 -4.2812 0.8071 10 7 5.2324 -4.3374 -0.4546 11 14 5.1076 -5.7643 1.9169 12 1 4.6168 -5.4462 3.2819 13 1 4.3464 -6.9180 1.3742 14 1 6.5511 -6.1076 1.9768 15 6 4.2785 0.0493 1.8256 16 8 5.4830 -0.0924 1.8319 17 6 3.6541 1.2218 2.5372 18 6 4.7543 2.1616 3.0342 19 7 5.6684 2.5855 1.9653 20 6 4.2296 3.3244 3.8932 21 6 5.4599 3.1125 4.7912 22 6 5.4734 1.6556 4.2991 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 1.6765 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.5955 -1.7152 1.3018 31 1 1.7628 -0.1518 2.1362 32 1 3.4571 -2.2007 -0.4149 33 1 5.0749 -1.6058 0.0288 34 1 5.6281 -5.1491 -0.8090 35 1 3.0715 0.8634 3.3859 36 1 3.0011 1.7587 1.8491 37 1 5.9231 1.8062 1.3771 38 1 5.2657 3.3332 1.4205 39 1 3.2839 3.1081 4.3900 40 1 4.2265 4.2840 3.3762 41 1 6.3323 3.6868 4.4792 42 1 5.2460 3.2121 5.8554 43 1 6.4743 1.2684 4.1087 44 1 4.8671 0.9839 4.9069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094294719.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:52 Heat of formation + Delta-G solvation = -47.134624 kcal Electronic energy + Delta-G solvation = -22063.547097 eV Core-core repulsion = 19015.206690 eV Total energy + Delta-G solvation = -3048.340407 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.39810 -39.53313 -37.68786 -35.51732 -34.11466 -32.81797 -31.02164 -29.10269 -27.97970 -26.89044 -26.49402 -25.19771 -23.37504 -21.44323 -19.94610 -19.45605 -18.60861 -18.04637 -17.22669 -16.71486 -16.46668 -16.22902 -15.95671 -15.52456 -15.26998 -14.54127 -14.51064 -14.40822 -14.12145 -13.78650 -13.37475 -13.31753 -13.13952 -12.91446 -12.83986 -12.67700 -12.59306 -12.31585 -12.19130 -12.06611 -11.86384 -11.66962 -11.61717 -11.56932 -11.24968 -11.11646 -10.67298 -10.37562 -9.52055 -9.36121 -8.24446 -6.39001 1.32535 1.35225 1.46672 1.86825 2.29600 2.45411 3.04703 3.52566 3.54067 3.83875 3.89311 3.93871 4.01982 4.06888 4.15636 4.31021 4.48627 4.53256 4.59368 4.68162 4.74058 4.79551 4.88703 4.91134 4.93985 5.03460 5.04135 5.05835 5.13707 5.20863 5.26897 5.28583 5.39344 5.48122 5.49472 5.53901 5.57588 5.85990 6.05464 6.36758 6.68403 6.69071 6.84842 7.27660 7.54231 8.82339 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015166 B = 0.006606 C = 0.005116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.779024 B = 4237.704855 C = 5471.978196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 C -0.145 4.145 4 C 0.110 3.890 5 N -0.601 5.601 6 C 0.266 3.734 7 C -0.538 4.538 8 H 0.049 0.951 9 C 0.007 3.993 10 N -0.928 5.928 11 Si 0.965 3.035 12 H -0.268 1.268 13 H -0.268 1.268 14 H -0.282 1.282 15 C 0.497 3.503 16 O -0.584 6.584 17 C -0.168 4.168 18 C 0.105 3.895 19 N -0.831 5.831 20 C -0.113 4.113 21 C -0.121 4.121 22 C -0.137 4.137 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.083 0.917 28 H 0.030 0.970 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.017 0.983 33 H -0.005 1.005 34 H 0.266 0.734 35 H 0.108 0.892 36 H 0.126 0.874 37 H 0.344 0.656 38 H 0.342 0.658 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.036 0.964 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.331 15.678 6.113 20.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.133 4.133 3 C -0.201 4.201 4 C -0.012 4.012 5 N -0.331 5.331 6 C 0.144 3.856 7 C -0.577 4.577 8 H 0.068 0.932 9 C -0.191 4.191 10 N -0.568 5.568 11 Si 0.790 3.210 12 H -0.193 1.193 13 H -0.193 1.193 14 H -0.208 1.208 15 C 0.287 3.713 16 O -0.464 6.464 17 C -0.209 4.209 18 C 0.011 3.989 19 N -0.365 5.365 20 C -0.150 4.150 21 C -0.159 4.159 22 C -0.175 4.175 23 H 0.095 0.905 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.035 0.965 33 H 0.013 0.987 34 H 0.075 0.925 35 H 0.126 0.874 36 H 0.144 0.856 37 H 0.161 0.839 38 H 0.156 0.844 39 H 0.123 0.877 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.055 0.945 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.134 15.660 6.550 19.770 hybrid contribution 0.049 -1.891 -0.739 2.030 sum -10.086 13.769 5.811 18.030 Atomic orbital electron populations 1.21714 0.92231 1.02185 1.03191 1.21497 0.97628 0.96744 0.97389 1.22005 0.99629 0.95339 1.03163 1.21823 0.78806 1.01301 0.99295 1.48230 1.07361 1.27716 1.49767 1.18606 0.92071 0.84217 0.90665 1.21712 1.40962 0.98307 0.96715 0.93243 1.25835 0.94802 1.01903 0.96599 1.70054 1.42674 1.29196 1.14918 0.85405 0.77883 0.78857 0.78896 1.19270 1.19306 1.20784 1.21350 0.86895 0.84159 0.78903 1.90597 1.16800 1.76768 1.62280 1.22891 1.00968 0.94596 1.02432 1.21800 0.90431 0.95062 0.91597 1.58726 1.44732 1.15052 1.18039 1.23037 0.98459 0.96992 0.96553 1.22631 0.98690 0.95042 0.99520 1.23013 0.99985 0.97599 0.96889 0.90533 0.91481 0.92987 0.93731 0.89810 0.95070 0.91309 0.91777 0.88142 0.96525 0.98696 0.92461 0.87400 0.85629 0.83885 0.84432 0.87661 0.89901 0.90715 0.90361 0.94519 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.19 71.98 0.66 -1.85 16 2 C -0.11 -2.90 3.10 -10.79 -0.03 -2.93 16 3 C -0.14 -3.10 7.47 71.98 0.54 -2.56 16 4 C 0.11 3.41 4.88 86.38 0.42 3.83 16 5 N -0.60 -25.19 2.23 -826.17 -1.85 -27.04 16 6 C 0.27 14.52 5.15 85.63 0.44 14.96 16 7 C -0.54 -31.65 9.39 25.60 0.24 -31.41 16 8 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 9 C 0.01 0.43 5.46 84.65 0.46 0.90 16 10 N -0.93 -57.11 13.29 21.44 0.28 -56.83 16 11 Si 0.97 45.94 29.54 68.60 2.03 47.96 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 13 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 14 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 15 C 0.50 20.11 6.19 87.66 0.54 20.65 16 16 O -0.58 -29.42 13.33 -3.03 -0.04 -29.46 16 17 C -0.17 -4.54 3.57 29.85 0.11 -4.43 16 18 C 0.11 2.82 0.92 4.15 0.00 2.82 16 19 N -0.83 -24.66 9.29 -149.13 -1.39 -26.04 16 20 C -0.11 -2.09 7.40 31.12 0.23 -1.86 16 21 C -0.12 -2.67 7.99 31.12 0.25 -2.42 16 22 C -0.14 -4.06 6.97 31.21 0.22 -3.85 16 23 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.04 1.43 7.95 -2.38 -0.02 1.41 16 27 H 0.08 1.33 6.64 -2.39 -0.02 1.31 16 28 H 0.03 0.83 6.24 -2.38 -0.01 0.81 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 2.16 8.12 -2.39 -0.02 2.14 16 31 H 0.10 2.39 6.38 -2.39 -0.02 2.37 16 32 H 0.02 0.94 7.88 -2.38 -0.02 0.92 16 33 H -0.01 -0.32 7.48 -2.39 -0.02 -0.34 16 34 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 35 H 0.11 2.53 7.56 -2.39 -0.02 2.51 16 36 H 0.13 2.70 3.68 -2.38 -0.01 2.70 16 37 H 0.34 12.77 6.20 -89.70 -0.56 12.21 16 38 H 0.34 8.11 9.03 -89.70 -0.81 7.30 16 39 H 0.11 1.48 8.10 -2.39 -0.02 1.46 16 40 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 43 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.08 2.17 8.05 -2.38 -0.02 2.15 16 Total: -1.00 -73.37 341.24 2.74 -70.63 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: -0.38 Total: 28.93 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 4.08 Total: -8.16 kcal Atomic # 7 Polarization: -106.96 SS G_CDS: -2.95 Total: -109.91 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.04 Total: -29.46 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -73.37 2.74 -70.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094294719.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.499 kcal (2) G-P(sol) polarization free energy of solvation -73.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds