Wall clock time and date at job start Mon Mar 30 2020 05:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47318 * 2 1 4 4 H 1.09009 * 109.47108 * 305.56518 * 3 2 1 5 5 C 1.50698 * 109.47622 * 185.56557 * 3 2 1 6 6 H 1.08007 * 119.99869 * 273.49868 * 5 3 2 7 7 C 1.37875 * 120.00042 * 93.48989 * 5 3 2 8 8 N 1.31518 * 119.99576 * 177.78562 * 7 5 3 9 9 Si 1.86791 * 120.00256 * 357.79183 * 7 5 3 10 10 H 1.48497 * 109.47467 * 84.80809 * 9 7 5 11 11 H 1.48499 * 109.47362 * 204.81187 * 9 7 5 12 12 H 1.48506 * 109.47191 * 324.80851 * 9 7 5 13 13 N 1.46505 * 109.47099 * 65.55976 * 3 2 1 14 14 C 1.34774 * 120.00387 * 275.00197 * 13 3 2 15 15 O 1.21276 * 119.99652 * 0.02562 * 14 13 3 16 16 C 1.50701 * 120.00234 * 179.97438 * 14 13 3 17 17 H 1.08997 * 108.85438 * 65.02999 * 16 14 13 18 18 C 1.50480 * 108.87384 * 306.57066 * 16 14 13 19 19 C 1.54243 * 108.52054 * 145.07295 * 18 16 14 20 20 C 1.45540 * 112.40428 * 79.98448 * 19 18 16 21 21 C 1.54244 * 112.40615 * 298.05923 * 20 19 18 22 22 C 1.50472 * 108.51510 * 79.99429 * 21 20 19 23 23 C 1.54059 * 112.49833 * 265.84594 * 22 21 20 24 24 H 1.09001 * 108.81416 * 280.85703 * 23 22 21 25 25 N 1.46896 * 108.81756 * 162.57783 * 23 22 21 26 26 H 1.09000 * 109.46999 * 300.00061 * 1 2 3 27 27 H 1.08998 * 109.47330 * 59.99791 * 1 2 3 28 28 H 1.09002 * 109.47091 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47330 * 120.00209 * 2 1 3 30 30 H 1.09000 * 109.46999 * 239.99939 * 2 1 3 31 31 H 0.97002 * 119.99329 * 179.97438 * 8 7 5 32 32 H 0.97000 * 119.99315 * 95.00642 * 13 3 2 33 33 H 1.08992 * 109.62677 * 264.78237 * 18 16 14 34 34 H 1.09000 * 109.62660 * 25.36158 * 18 16 14 35 35 H 1.08995 * 108.89823 * 319.22839 * 19 18 16 36 36 H 1.09000 * 108.81133 * 200.68157 * 19 18 16 37 37 H 1.08994 * 108.89485 * 177.30493 * 20 19 18 38 38 H 1.09003 * 108.89712 * 58.81295 * 20 19 18 39 39 H 1.08994 * 109.62638 * 320.28657 * 21 20 19 40 40 H 1.09004 * 109.62541 * 199.69928 * 21 20 19 41 41 H 1.09008 * 108.87492 * 145.06890 * 22 21 20 42 42 H 1.09001 * 108.79810 * 26.56864 * 22 21 20 43 43 H 1.00898 * 111.00016 * 298.07898 * 25 23 22 44 44 H 1.00901 * 110.99551 * 62.03143 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5976 1.9843 -0.8360 5 6 3.5407 1.4448 -0.1378 6 1 4.1637 1.3584 0.7402 7 6 4.1183 1.5570 -1.3847 8 7 5.4275 1.6029 -1.5011 9 14 3.0415 1.6441 -2.9085 10 1 2.6136 3.0483 -3.1327 11 1 3.8104 1.1669 -4.0859 12 1 1.8443 0.7862 -2.7183 13 7 1.6640 2.0934 1.2575 14 6 0.4479 2.6599 1.3858 15 8 -0.3354 2.6305 0.4604 16 6 0.0609 3.3290 2.6795 17 1 0.7037 4.1956 2.8339 18 6 0.2734 2.3601 3.8111 19 6 0.7439 3.1494 5.0500 20 6 -0.3582 3.7943 5.7483 21 6 -1.0839 4.8331 4.8690 22 6 -2.0288 4.1058 3.9513 23 6 -1.4010 3.8043 2.5772 24 1 -1.4348 4.7084 1.9692 25 7 -2.1930 2.7605 1.9130 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 5.8339 1.6815 -2.3784 32 1 2.2905 2.1166 1.9977 33 1 -0.6626 1.8492 4.0363 34 1 1.0337 1.6310 3.5310 35 1 1.4557 3.9118 4.7335 36 1 1.2429 2.4638 5.7349 37 1 0.0302 4.2930 6.6363 38 1 -1.0738 3.0326 6.0582 39 1 -0.3539 5.3870 4.2788 40 1 -1.6448 5.5207 5.5021 41 1 -2.9195 4.7171 3.8057 42 1 -2.3196 3.1656 4.4200 43 1 -2.1816 1.9039 2.4460 44 1 -3.1387 3.0727 1.7506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094753461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:57 Heat of formation + Delta-G solvation = -50.302700 kcal Electronic energy + Delta-G solvation = -22312.469097 eV Core-core repulsion = 19263.991313 eV Total energy + Delta-G solvation = -3048.477785 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.07596 -37.90205 -35.11751 -34.01685 -32.65478 -32.07019 -30.93863 -29.28083 -27.30244 -25.10122 -23.85431 -22.65225 -20.90543 -20.62469 -19.42591 -18.69449 -17.28156 -16.46384 -16.11246 -15.24548 -15.14884 -14.55804 -14.39751 -14.11106 -13.82218 -13.42664 -12.99337 -12.95238 -12.68038 -12.50798 -12.47659 -11.87135 -11.78652 -11.63908 -11.53611 -10.91830 -10.84321 -10.81375 -10.57669 -10.55942 -10.50511 -10.44136 -10.31360 -9.81297 -9.74268 -9.06946 -8.76794 -8.63657 -7.98582 -7.69181 -6.15877 -4.18088 3.32715 3.39997 3.48737 3.65740 4.15072 4.40241 4.52177 4.61507 4.72021 4.87790 5.00211 5.15349 5.21263 5.23464 5.28875 5.32953 5.56261 5.66122 5.79740 5.91445 5.95776 5.99618 6.00615 6.05625 6.10969 6.18512 6.22871 6.23073 6.29979 6.41304 6.44370 6.80234 6.92518 7.14342 7.17674 7.42930 7.43836 7.53610 7.70810 7.78621 8.29494 8.79411 8.88038 9.34961 9.49653 10.96159 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026559 B = 0.005609 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.012071 B = 4990.812912 C = 5389.936379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C 0.243 3.757 4 H 0.046 0.954 5 C -0.528 4.528 6 H 0.076 0.924 7 C 0.080 3.920 8 N -0.893 5.893 9 Si 0.874 3.126 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.258 1.258 13 N -0.714 5.714 14 C 0.500 3.500 15 O -0.508 6.508 16 C -0.102 4.102 17 H 0.090 0.910 18 C -0.111 4.111 19 C -0.120 4.120 20 C -0.116 4.116 21 C -0.116 4.116 22 C -0.151 4.151 23 C 0.117 3.883 24 H 0.076 0.924 25 N -0.811 5.811 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.023 0.977 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.266 0.734 32 H 0.387 0.613 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.329 0.671 44 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.938 3.772 13.712 19.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C 0.140 3.860 4 H 0.064 0.936 5 C -0.566 4.566 6 H 0.094 0.906 7 C -0.124 4.124 8 N -0.530 5.530 9 Si 0.700 3.300 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.182 1.182 13 N -0.365 5.365 14 C 0.283 3.717 15 O -0.383 6.383 16 C -0.124 4.124 17 H 0.108 0.892 18 C -0.149 4.149 19 C -0.158 4.158 20 C -0.153 4.153 21 C -0.154 4.154 22 C -0.191 4.191 23 C 0.004 3.996 24 H 0.094 0.906 25 N -0.338 5.338 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.220 0.780 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.142 0.858 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.823 3.816 12.247 18.138 hybrid contribution -0.629 0.120 0.462 0.790 sum -13.452 3.936 12.708 18.920 Atomic orbital electron populations 1.21886 0.97111 0.98375 1.02565 1.22099 0.93953 0.99738 1.00735 1.18966 0.95015 0.88791 0.83248 0.93624 1.21062 0.88989 1.51588 0.94945 0.90579 1.24921 0.94857 0.93681 0.98946 1.69894 1.09464 1.49250 1.24408 0.86915 0.81143 0.79463 0.82435 1.20025 1.21443 1.18221 1.46524 1.14865 1.57408 1.17708 1.20223 0.82399 0.79818 0.89220 1.90705 1.49549 1.57734 1.40273 1.21242 0.97073 0.99379 0.94742 0.89238 1.21403 1.01971 0.97620 0.93895 1.20521 0.98294 0.99612 0.97356 1.20486 0.98220 0.98208 0.98386 1.21297 0.98697 0.97713 0.97713 1.22316 0.98939 1.00480 0.97384 1.21586 0.91522 0.95163 0.91338 0.90581 1.58918 1.16606 1.05234 1.53058 0.92318 0.93252 0.95763 0.93380 0.92556 0.92420 0.77982 0.91734 0.90711 0.91753 0.92088 0.92514 0.92497 0.91360 0.92314 0.92517 0.92266 0.85846 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.53 37.16 0.32 -2.57 16 2 C -0.13 -2.79 5.37 -26.73 -0.14 -2.93 16 3 C 0.24 5.79 1.82 -69.08 -0.13 5.67 16 4 H 0.05 1.21 5.15 -51.92 -0.27 0.94 16 5 C -0.53 -14.35 9.05 -34.44 -0.31 -14.66 16 6 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 7 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 8 N -0.89 -26.70 13.96 55.43 0.77 -25.93 16 9 Si 0.87 22.04 26.37 -169.99 -4.48 17.56 16 10 H -0.27 -7.00 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.26 -6.38 6.48 56.52 0.37 -6.01 16 13 N -0.71 -14.25 4.59 -54.93 -0.25 -14.51 16 14 C 0.50 9.24 5.49 -10.99 -0.06 9.18 16 15 O -0.51 -10.97 11.44 5.56 0.06 -10.91 16 16 C -0.10 -1.38 1.90 -92.47 -0.18 -1.56 16 17 H 0.09 1.17 6.62 -51.93 -0.34 0.83 16 18 C -0.11 -1.28 4.98 -27.34 -0.14 -1.41 16 19 C -0.12 -1.15 5.26 -29.60 -0.16 -1.31 16 20 C -0.12 -0.99 5.26 -29.60 -0.16 -1.14 16 21 C -0.12 -1.02 5.61 -27.34 -0.15 -1.17 16 22 C -0.15 -1.42 4.88 -27.44 -0.13 -1.55 16 23 C 0.12 1.43 2.66 -66.61 -0.18 1.26 16 24 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 25 N -0.81 -10.70 6.66 -3.73 -0.02 -10.72 16 26 H 0.06 1.16 5.63 -51.93 -0.29 0.87 16 27 H 0.05 1.08 7.88 -51.93 -0.41 0.68 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 1.30 7.22 -51.93 -0.38 0.93 16 31 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.39 7.03 7.66 -40.82 -0.31 6.72 16 33 H 0.06 0.71 6.30 -51.93 -0.33 0.38 16 34 H 0.07 0.95 6.54 -51.93 -0.34 0.61 16 35 H 0.06 0.63 7.47 -51.93 -0.39 0.24 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.48 7.47 -51.93 -0.39 0.09 16 39 H 0.07 0.64 6.97 -51.93 -0.36 0.28 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 42 H 0.06 0.55 6.53 -51.93 -0.34 0.21 16 43 H 0.33 4.09 8.21 -39.29 -0.32 3.77 16 44 H 0.33 3.76 9.05 -39.29 -0.36 3.41 16 LS Contribution 322.05 15.07 4.85 4.85 Total: -1.00 -30.75 322.05 -7.95 -38.70 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -7.37 Total: 11.00 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -1.51 Total: -10.04 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: 0.50 Total: -51.15 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.06 Total: -10.91 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.48 Total: 17.56 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.75 -7.95 -38.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094753461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.601 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds