Wall clock time and date at job start Mon Mar 30 2020 05:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47318 * 2 1 4 4 H 1.09009 * 109.47108 * 305.56518 * 3 2 1 5 5 C 1.50698 * 109.47622 * 185.56557 * 3 2 1 6 6 H 1.08007 * 119.99869 * 273.49868 * 5 3 2 7 7 C 1.37875 * 120.00042 * 93.48989 * 5 3 2 8 8 N 1.31518 * 119.99576 * 177.78562 * 7 5 3 9 9 Si 1.86791 * 120.00256 * 357.79183 * 7 5 3 10 10 H 1.48497 * 109.47467 * 84.80809 * 9 7 5 11 11 H 1.48499 * 109.47362 * 204.81187 * 9 7 5 12 12 H 1.48506 * 109.47191 * 324.80851 * 9 7 5 13 13 N 1.46505 * 109.47099 * 65.55976 * 3 2 1 14 14 C 1.34774 * 120.00387 * 275.00197 * 13 3 2 15 15 O 1.21276 * 119.99652 * 0.02562 * 14 13 3 16 16 C 1.50701 * 120.00234 * 179.97438 * 14 13 3 17 17 H 1.08997 * 108.85438 * 65.02999 * 16 14 13 18 18 C 1.50480 * 108.87384 * 306.57066 * 16 14 13 19 19 C 1.54243 * 108.52054 * 145.07295 * 18 16 14 20 20 C 1.45540 * 112.40428 * 79.98448 * 19 18 16 21 21 C 1.54244 * 112.40615 * 298.05923 * 20 19 18 22 22 C 1.50472 * 108.51510 * 79.99429 * 21 20 19 23 23 C 1.54059 * 112.49833 * 265.84594 * 22 21 20 24 24 H 1.09001 * 108.81416 * 280.85703 * 23 22 21 25 25 N 1.46896 * 108.81756 * 162.57783 * 23 22 21 26 26 H 1.09000 * 109.46999 * 300.00061 * 1 2 3 27 27 H 1.08998 * 109.47330 * 59.99791 * 1 2 3 28 28 H 1.09002 * 109.47091 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47330 * 120.00209 * 2 1 3 30 30 H 1.09000 * 109.46999 * 239.99939 * 2 1 3 31 31 H 0.97002 * 119.99329 * 179.97438 * 8 7 5 32 32 H 0.97000 * 119.99315 * 95.00642 * 13 3 2 33 33 H 1.08992 * 109.62677 * 264.78237 * 18 16 14 34 34 H 1.09000 * 109.62660 * 25.36158 * 18 16 14 35 35 H 1.08995 * 108.89823 * 319.22839 * 19 18 16 36 36 H 1.09000 * 108.81133 * 200.68157 * 19 18 16 37 37 H 1.08994 * 108.89485 * 177.30493 * 20 19 18 38 38 H 1.09003 * 108.89712 * 58.81295 * 20 19 18 39 39 H 1.08994 * 109.62638 * 320.28657 * 21 20 19 40 40 H 1.09004 * 109.62541 * 199.69928 * 21 20 19 41 41 H 1.09008 * 108.87492 * 145.06890 * 22 21 20 42 42 H 1.09001 * 108.79810 * 26.56864 * 22 21 20 43 43 H 1.00898 * 111.00016 * 298.07898 * 25 23 22 44 44 H 1.00901 * 110.99551 * 62.03143 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5976 1.9843 -0.8360 5 6 3.5407 1.4448 -0.1378 6 1 4.1637 1.3584 0.7402 7 6 4.1183 1.5570 -1.3847 8 7 5.4275 1.6029 -1.5011 9 14 3.0415 1.6441 -2.9085 10 1 2.6136 3.0483 -3.1327 11 1 3.8104 1.1669 -4.0859 12 1 1.8443 0.7862 -2.7183 13 7 1.6640 2.0934 1.2575 14 6 0.4479 2.6599 1.3858 15 8 -0.3354 2.6305 0.4604 16 6 0.0609 3.3290 2.6795 17 1 0.7037 4.1956 2.8339 18 6 0.2734 2.3601 3.8111 19 6 0.7439 3.1494 5.0500 20 6 -0.3582 3.7943 5.7483 21 6 -1.0839 4.8331 4.8690 22 6 -2.0288 4.1058 3.9513 23 6 -1.4010 3.8043 2.5772 24 1 -1.4348 4.7084 1.9692 25 7 -2.1930 2.7605 1.9130 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 5.8339 1.6815 -2.3784 32 1 2.2905 2.1166 1.9977 33 1 -0.6626 1.8492 4.0363 34 1 1.0337 1.6310 3.5310 35 1 1.4557 3.9118 4.7335 36 1 1.2429 2.4638 5.7349 37 1 0.0302 4.2930 6.6363 38 1 -1.0738 3.0326 6.0582 39 1 -0.3539 5.3870 4.2788 40 1 -1.6448 5.5207 5.5021 41 1 -2.9195 4.7171 3.8057 42 1 -2.3196 3.1656 4.4200 43 1 -2.1816 1.9039 2.4460 44 1 -3.1387 3.0727 1.7506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094753461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:56 Heat of formation + Delta-G solvation = -71.648141 kcal Electronic energy + Delta-G solvation = -22313.394705 eV Core-core repulsion = 19263.991313 eV Total energy + Delta-G solvation = -3049.403393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.28926 -39.16858 -36.76965 -35.07883 -34.29409 -33.68512 -32.31460 -30.31761 -29.19049 -26.09600 -24.88110 -24.41613 -22.36797 -21.36095 -21.11356 -20.00596 -18.96359 -17.78811 -17.53271 -16.86043 -16.33670 -15.94262 -15.42857 -15.37641 -15.21728 -14.77563 -14.45058 -14.33104 -13.83512 -13.70271 -13.68930 -13.50768 -13.34154 -12.91352 -12.85270 -12.70262 -12.46583 -12.23214 -11.84809 -11.74876 -11.59977 -11.51142 -11.43394 -11.26339 -11.19121 -11.10546 -10.83501 -10.14144 -9.43861 -9.01225 -8.36532 -6.40698 1.29633 1.33482 1.45585 2.18871 2.29063 2.65459 3.09305 3.68327 3.72637 3.78660 4.07396 4.13036 4.26464 4.33936 4.39415 4.41988 4.49430 4.51429 4.53032 4.69015 4.76137 4.89589 4.98814 5.04033 5.10645 5.13880 5.18407 5.23666 5.33811 5.35872 5.37619 5.39455 5.43680 5.50824 5.54393 5.58756 5.66571 5.96257 6.22799 6.51162 6.64413 6.79413 7.19529 7.26385 7.85003 8.78797 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026559 B = 0.005609 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.012071 B = 4990.812912 C = 5389.936379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.123 4.123 3 C 0.249 3.751 4 H 0.022 0.978 5 C -0.523 4.523 6 H 0.053 0.947 7 C 0.031 3.969 8 N -0.934 5.934 9 Si 0.926 3.074 10 H -0.279 1.279 11 H -0.279 1.279 12 H -0.252 1.252 13 N -0.716 5.716 14 C 0.497 3.503 15 O -0.538 6.538 16 C -0.090 4.090 17 H 0.095 0.905 18 C -0.106 4.106 19 C -0.115 4.115 20 C -0.114 4.114 21 C -0.117 4.117 22 C -0.139 4.139 23 C 0.120 3.880 24 H 0.058 0.942 25 N -0.830 5.830 26 H 0.062 0.938 27 H 0.028 0.972 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.043 0.957 31 H 0.268 0.732 32 H 0.396 0.604 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.333 0.667 44 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.725 3.847 15.341 21.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.162 4.162 3 C 0.144 3.856 4 H 0.040 0.960 5 C -0.562 4.562 6 H 0.071 0.929 7 C -0.168 4.168 8 N -0.573 5.573 9 Si 0.751 3.249 10 H -0.205 1.205 11 H -0.205 1.205 12 H -0.176 1.176 13 N -0.367 5.367 14 C 0.283 3.717 15 O -0.414 6.414 16 C -0.112 4.112 17 H 0.113 0.887 18 C -0.144 4.144 19 C -0.153 4.153 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.178 4.178 23 C 0.007 3.993 24 H 0.077 0.923 25 N -0.359 5.359 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.230 0.770 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.146 0.854 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.625 3.896 13.906 20.553 hybrid contribution -0.068 0.116 0.007 0.135 sum -14.693 4.012 13.913 20.628 Atomic orbital electron populations 1.21728 0.95377 0.99741 1.01719 1.21997 0.95375 0.98224 1.00608 1.18674 0.92616 0.89973 0.84299 0.96031 1.21290 0.90697 1.50170 0.94002 0.92889 1.25578 0.95731 0.93926 1.01602 1.69991 1.10896 1.51277 1.25144 0.86084 0.79901 0.79125 0.79798 1.20518 1.20507 1.17602 1.46346 1.15962 1.57790 1.16650 1.21039 0.81180 0.78899 0.90591 1.90693 1.50202 1.58681 1.41842 1.21231 0.98135 0.99447 0.92393 0.88657 1.21365 1.02092 0.97078 0.93892 1.20487 0.98744 0.99502 0.96545 1.20471 0.97892 0.98273 0.98523 1.21319 0.98543 0.97910 0.97724 1.22166 0.99053 1.01121 0.95487 1.21534 0.90691 0.94132 0.92931 0.92330 1.58862 1.17411 1.05769 1.53833 0.91933 0.95266 0.93224 0.92330 0.93852 0.92237 0.76960 0.90859 0.91966 0.92089 0.91214 0.91343 0.91870 0.92135 0.90896 0.91617 0.91524 0.85399 0.84776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.03 8.53 71.98 0.61 -4.42 16 2 C -0.12 -5.34 5.37 30.59 0.16 -5.18 16 3 C 0.25 11.88 1.82 44.24 0.08 11.96 16 4 H 0.02 1.15 5.15 -2.38 -0.01 1.14 16 5 C -0.52 -28.87 9.05 25.60 0.23 -28.64 16 6 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 7 C 0.03 1.81 5.47 84.65 0.46 2.27 16 8 N -0.93 -56.82 13.96 21.45 0.30 -56.52 16 9 Si 0.93 45.99 26.37 68.60 1.81 47.80 16 10 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 11 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 12 H -0.25 -12.17 6.48 99.48 0.64 -11.52 16 13 N -0.72 -28.36 4.59 -446.09 -2.05 -30.41 16 14 C 0.50 18.03 5.49 87.66 0.48 18.52 16 15 O -0.54 -23.00 11.44 -3.02 -0.03 -23.04 16 16 C -0.09 -2.31 1.90 -11.99 -0.02 -2.34 16 17 H 0.10 2.36 6.62 -2.39 -0.02 2.34 16 18 C -0.11 -2.22 4.98 30.20 0.15 -2.07 16 19 C -0.12 -1.91 5.26 28.74 0.15 -1.76 16 20 C -0.11 -1.57 5.26 28.74 0.15 -1.42 16 21 C -0.12 -1.69 5.61 30.20 0.17 -1.53 16 22 C -0.14 -2.22 4.88 30.13 0.15 -2.07 16 23 C 0.12 2.75 2.66 45.63 0.12 2.87 16 24 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 25 N -0.83 -20.69 6.66 -165.71 -1.10 -21.80 16 26 H 0.06 2.39 5.63 -2.39 -0.01 2.37 16 27 H 0.03 1.24 7.88 -2.39 -0.02 1.22 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.04 1.97 7.22 -2.39 -0.02 1.96 16 31 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 32 H 0.40 14.28 7.66 -92.71 -0.71 13.57 16 33 H 0.07 1.42 6.30 -2.39 -0.02 1.40 16 34 H 0.06 1.48 6.54 -2.39 -0.02 1.46 16 35 H 0.06 1.06 7.47 -2.39 -0.02 1.04 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 0.82 7.47 -2.39 -0.02 0.81 16 39 H 0.06 0.99 6.97 -2.39 -0.02 0.97 16 40 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 42 H 0.07 1.00 6.53 -2.39 -0.02 0.99 16 43 H 0.33 7.66 8.21 -89.70 -0.74 6.93 16 44 H 0.34 7.25 9.05 -89.69 -0.81 6.44 16 Total: -1.00 -66.18 322.05 0.52 -65.66 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: -1.31 Total: 32.09 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 2.90 Total: -13.79 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -2.85 Total: -108.73 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.03 Total: -23.04 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.81 Total: 47.80 kcal Total: -66.18 0.52 -65.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094753461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.984 kcal (2) G-P(sol) polarization free energy of solvation -66.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds