Wall clock time and date at job start Mon Mar 30 2020 05:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47050 * 2 1 4 4 H 1.09004 * 109.46811 * 304.99851 * 3 2 1 5 5 C 1.50701 * 109.47071 * 184.99964 * 3 2 1 6 6 H 1.07997 * 120.00464 * 239.99507 * 5 3 2 7 7 C 1.37882 * 119.99767 * 60.00290 * 5 3 2 8 8 N 1.31516 * 119.99910 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99846 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46878 * 89.99600 * 9 7 5 11 11 H 1.48496 * 109.46864 * 209.99778 * 9 7 5 12 12 H 1.48498 * 109.46759 * 329.99843 * 9 7 5 13 13 N 1.46497 * 109.47066 * 64.99975 * 3 2 1 14 14 C 1.34775 * 120.00065 * 274.99769 * 13 3 2 15 15 O 1.21282 * 120.00101 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00187 * 179.97438 * 14 13 3 17 17 H 1.08994 * 109.63240 * 186.57538 * 16 14 13 18 18 C 1.54244 * 109.62932 * 306.96916 * 16 14 13 19 19 C 1.45544 * 112.40676 * 199.69454 * 18 16 14 20 20 C 1.54241 * 112.40512 * 298.06665 * 19 18 16 21 21 C 1.50465 * 108.52775 * 79.98170 * 20 19 18 22 22 C 1.54062 * 112.50217 * 265.85116 * 21 20 19 23 23 C 1.50486 * 109.62764 * 65.99373 * 16 14 13 24 24 H 1.08996 * 108.87510 * 266.92146 * 23 16 14 25 25 N 1.46899 * 108.87436 * 25.36291 * 23 16 14 26 26 H 1.08998 * 109.47180 * 300.00115 * 1 2 3 27 27 H 1.09000 * 109.47476 * 60.00101 * 1 2 3 28 28 H 1.09008 * 109.47217 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47180 * 239.99885 * 2 1 3 30 30 H 1.08994 * 109.47080 * 120.00051 * 2 1 3 31 31 H 0.97001 * 119.99333 * 180.02562 * 8 7 5 32 32 H 0.97001 * 120.00063 * 95.00510 * 13 3 2 33 33 H 1.08997 * 108.89063 * 320.45062 * 18 16 14 34 34 H 1.09000 * 108.89650 * 78.94109 * 18 16 14 35 35 H 1.08998 * 108.89181 * 58.81393 * 19 18 16 36 36 H 1.08997 * 108.89412 * 177.40276 * 19 18 16 37 37 H 1.08996 * 109.62553 * 199.69468 * 20 19 18 38 38 H 1.09002 * 109.62643 * 320.27282 * 20 19 18 39 39 H 1.09007 * 108.87641 * 26.63216 * 21 20 19 40 40 H 1.08998 * 108.87546 * 145.17089 * 21 20 19 41 41 H 1.09002 * 108.81770 * 162.57845 * 22 21 20 42 42 H 1.09006 * 108.81130 * 280.96844 * 22 21 20 43 43 H 1.00896 * 111.00310 * 173.04803 * 25 23 16 44 44 H 1.00904 * 110.99870 * 297.00316 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3367 -2.1729 9 14 6.0049 0.8813 -1.3819 10 1 6.5548 -0.3501 -0.7603 11 1 6.3828 0.9224 -2.8174 12 1 6.5568 2.0738 -0.6903 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3396 2.6319 0.4344 16 6 0.0362 3.3376 2.6548 17 1 -1.0121 3.6318 2.6048 18 6 0.2460 2.3659 3.8341 19 6 -0.5197 2.7485 5.0112 20 6 -0.1062 4.1301 5.5580 21 6 -0.7687 5.1924 4.7234 22 6 0.1347 5.6927 3.5801 23 6 0.8961 4.5523 2.8777 24 1 1.7526 4.2705 3.4900 25 7 1.3823 5.0352 1.5783 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8293 -0.0618 -2.9495 32 1 2.2719 2.1232 1.9977 33 1 -0.0574 1.3655 3.5254 34 1 1.3048 2.3476 4.0924 35 1 -1.5778 2.7742 4.7509 36 1 -0.3663 2.0017 5.7902 37 1 -0.4287 4.2250 6.5949 38 1 0.9767 4.2389 5.4970 39 1 -1.6851 4.7849 4.2963 40 1 -1.0238 6.0363 5.3643 41 1 -0.4824 6.2087 2.8445 42 1 0.8590 6.3981 3.9874 43 1 1.8689 5.9134 1.6780 44 1 1.9686 4.3455 1.1326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094753463.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:59 Heat of formation + Delta-G solvation = -62.553869 kcal Electronic energy + Delta-G solvation = -22303.230130 eV Core-core repulsion = 19254.221094 eV Total energy + Delta-G solvation = -3049.009035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.11976 -37.83374 -34.93318 -34.29760 -32.78322 -32.00195 -30.61583 -29.16508 -26.95409 -25.34573 -23.54719 -22.91274 -21.18381 -20.31299 -19.47153 -18.79341 -17.05970 -16.06826 -15.84057 -15.27865 -15.17802 -14.72292 -14.33638 -14.02442 -13.90203 -13.69822 -13.31530 -12.86955 -12.66388 -12.42890 -12.01359 -11.94345 -11.48324 -11.42049 -11.21721 -10.99351 -10.85415 -10.81155 -10.64030 -10.57517 -10.45968 -10.34910 -10.28162 -10.10995 -9.58799 -9.00875 -8.74839 -8.46264 -8.40017 -7.72451 -6.10435 -4.19899 3.23899 3.31221 3.32532 3.57079 4.20251 4.42488 4.46603 4.56331 4.77494 4.98465 5.02819 5.19625 5.21090 5.22816 5.32991 5.40781 5.50601 5.69726 5.82658 5.90401 5.98896 6.04883 6.09792 6.14683 6.20364 6.24511 6.33884 6.43100 6.43430 6.50692 6.71483 7.08476 7.25623 7.39452 7.42557 7.54899 7.64989 7.69962 7.79361 7.94768 8.22328 8.75159 8.83106 9.26361 9.48773 10.94681 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024213 B = 0.005517 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.107415 B = 5073.771670 C = 5502.259341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.058 0.942 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.715 5.715 14 C 0.523 3.477 15 O -0.544 6.544 16 C -0.099 4.099 17 H 0.099 0.901 18 C -0.114 4.114 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.112 4.112 23 C 0.106 3.894 24 H 0.034 0.966 25 N -0.853 5.853 26 H 0.038 0.962 27 H 0.049 0.951 28 H 0.021 0.979 29 H 0.097 0.903 30 H 0.029 0.971 31 H 0.264 0.736 32 H 0.383 0.617 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.335 0.665 44 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.419 6.635 14.583 16.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.571 4.571 6 H 0.076 0.924 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.364 5.364 14 C 0.308 3.692 15 O -0.422 6.422 16 C -0.121 4.121 17 H 0.117 0.883 18 C -0.152 4.152 19 C -0.154 4.154 20 C -0.157 4.157 21 C -0.155 4.155 22 C -0.150 4.150 23 C -0.006 4.006 24 H 0.052 0.948 25 N -0.387 5.387 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.116 0.884 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.215 0.785 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.147 0.853 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.711 6.515 13.469 16.015 hybrid contribution 2.302 -0.140 0.652 2.397 sum -3.409 6.375 14.120 15.863 Atomic orbital electron populations 1.21840 0.98423 0.97883 1.01272 1.21926 0.92558 1.00028 1.02085 1.18735 0.93933 0.89129 0.81308 0.93276 1.21216 0.90825 1.39009 1.06087 0.92350 1.24876 0.98380 0.94899 0.95441 1.69900 1.35008 1.37547 1.09342 0.86496 0.85156 0.78335 0.77362 1.20640 1.21105 1.19989 1.46566 1.14850 1.56795 1.18221 1.20004 0.82432 0.78206 0.88572 1.90657 1.51591 1.59401 1.40512 1.21395 1.02217 0.94957 0.93579 0.88265 1.20498 1.01067 0.99262 0.94339 1.20483 1.00486 0.96996 0.97394 1.21377 1.01011 0.94649 0.98657 1.21321 0.99130 0.98511 0.96570 1.21946 0.98803 0.97069 0.97165 1.21022 0.95954 0.93734 0.89873 0.94845 1.58907 1.48507 1.09037 1.22238 0.94292 0.93163 0.96011 0.88441 0.95219 0.92617 0.78527 0.91368 0.91756 0.91934 0.92114 0.92069 0.91641 0.91769 0.92330 0.90956 0.92546 0.85273 0.82545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.51 37.16 0.32 -2.79 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.70 2.24 -69.08 -0.15 6.54 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 5 C -0.53 -13.75 8.73 -34.44 -0.30 -14.05 16 6 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.55 11.29 55.43 0.63 -23.93 16 9 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.72 -14.34 3.75 -54.93 -0.21 -14.54 16 14 C 0.52 10.30 3.44 -10.99 -0.04 10.26 16 15 O -0.54 -13.11 14.23 5.56 0.08 -13.03 16 16 C -0.10 -1.48 2.13 -92.38 -0.20 -1.68 16 17 H 0.10 1.55 6.98 -51.93 -0.36 1.19 16 18 C -0.11 -1.41 4.27 -29.60 -0.13 -1.53 16 19 C -0.12 -1.16 5.26 -29.60 -0.16 -1.32 16 20 C -0.12 -1.08 5.61 -27.35 -0.15 -1.23 16 21 C -0.12 -1.11 5.31 -27.44 -0.15 -1.26 16 22 C -0.11 -1.22 5.32 -25.62 -0.14 -1.36 16 23 C 0.11 1.39 2.60 -68.41 -0.18 1.22 16 24 H 0.03 0.42 6.63 -51.93 -0.34 0.07 16 25 N -0.85 -13.05 8.56 -5.27 -0.05 -13.10 16 26 H 0.04 0.86 5.64 -51.93 -0.29 0.56 16 27 H 0.05 1.22 7.85 -51.93 -0.41 0.81 16 28 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.38 6.83 8.03 -40.82 -0.33 6.51 16 33 H 0.07 0.93 7.96 -51.93 -0.41 0.51 16 34 H 0.06 0.75 7.25 -51.93 -0.38 0.38 16 35 H 0.06 0.63 7.47 -51.93 -0.39 0.24 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.61 6.98 -51.93 -0.36 0.24 16 39 H 0.06 0.64 6.64 -51.93 -0.34 0.30 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.34 4.32 8.90 -39.29 -0.35 3.97 16 44 H 0.36 6.27 6.73 -39.29 -0.26 6.01 16 LS Contribution 326.47 15.07 4.92 4.92 Total: -1.00 -29.26 326.47 -8.59 -37.85 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -7.44 Total: 15.16 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -1.51 Total: -8.74 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.37 Total: -51.56 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.08 Total: -13.03 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.26 -8.59 -37.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094753463.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.700 kcal (2) G-P(sol) polarization free energy of solvation -29.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds