Wall clock time and date at job start Mon Mar 30 2020 05:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46676 * 2 1 4 4 C 1.50695 * 109.46871 * 179.97438 * 3 2 1 5 5 O 1.21283 * 120.00143 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00320 * 180.02562 * 4 3 2 7 7 C 1.46494 * 120.00284 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.53893 * 34.90590 * 7 6 4 9 9 C 1.53118 * 109.50625 * 274.80376 * 7 6 4 10 10 C 1.53119 * 109.16231 * 182.40760 * 9 7 6 11 11 C 1.53029 * 109.27937 * 57.65504 * 10 9 7 12 12 N 1.46846 * 109.52379 * 300.81811 * 11 10 9 13 13 C 1.46902 * 111.00452 * 185.83976 * 12 11 10 14 14 H 1.08996 * 109.47149 * 175.78540 * 13 12 11 15 15 C 1.52997 * 109.47094 * 295.79434 * 13 12 11 16 16 C 1.50706 * 109.46577 * 55.79225 * 13 12 11 17 17 H 1.07999 * 120.00196 * 359.97438 * 16 13 12 18 18 C 1.37879 * 119.99394 * 180.02562 * 16 13 12 19 19 N 1.31514 * 119.99350 * 179.97438 * 18 16 13 20 20 Si 1.86789 * 120.00458 * 0.02562 * 18 16 13 21 21 H 1.48500 * 109.47356 * 89.99481 * 20 18 16 22 22 H 1.48501 * 109.47162 * 209.99853 * 20 18 16 23 23 H 1.48503 * 109.47180 * 329.99546 * 20 18 16 24 24 C 1.46855 * 111.19530 * 61.74350 * 12 11 10 25 25 H 1.08999 * 109.46780 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47142 * 299.99557 * 1 2 3 27 27 H 1.08995 * 109.47079 * 59.99982 * 1 2 3 28 28 H 1.08991 * 109.46809 * 240.00467 * 2 1 3 29 29 H 1.08995 * 109.47079 * 120.00018 * 2 1 3 30 30 H 1.09004 * 109.46974 * 60.00339 * 3 2 1 31 31 H 1.08999 * 109.47131 * 300.00282 * 3 2 1 32 32 H 0.97002 * 119.99641 * 0.02562 * 6 4 3 33 33 H 1.09005 * 109.51997 * 302.31279 * 9 7 6 34 34 H 1.08998 * 109.52551 * 62.49703 * 9 7 6 35 35 H 1.09001 * 109.50152 * 177.59830 * 10 9 7 36 36 H 1.09002 * 109.50014 * 297.67176 * 10 9 7 37 37 H 1.08999 * 109.46172 * 180.80536 * 11 10 9 38 38 H 1.08997 * 109.46885 * 60.83686 * 11 10 9 39 39 H 1.09002 * 109.47153 * 299.99508 * 15 13 12 40 40 H 1.09001 * 109.46832 * 179.97438 * 15 13 12 41 41 H 1.09004 * 109.47261 * 59.99681 * 15 13 12 42 42 H 0.97005 * 119.99656 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.46216 * 58.28070 * 24 12 11 44 44 H 1.09006 * 109.45614 * 178.25267 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 8 4.1534 0.3923 0.0006 6 7 4.2208 2.6098 0.0013 7 6 5.6858 2.6099 0.0013 8 1 6.0504 1.7677 -0.5869 9 6 6.1970 2.4883 1.4395 10 6 7.7270 2.5496 1.4359 11 6 8.1786 3.8591 0.7855 12 7 7.6650 3.9272 -0.5885 13 6 8.1929 5.1049 -1.2902 14 1 7.8570 5.0910 -2.3270 15 6 7.6852 6.3760 -0.6065 16 6 9.6992 5.0802 -1.2499 17 1 10.2129 4.2709 -0.7524 18 6 10.4214 6.0915 -1.8472 19 7 11.7359 6.0702 -1.8115 20 14 9.5329 7.4924 -2.7057 21 1 9.2776 8.5860 -1.7341 22 1 10.3738 8.0043 -3.8176 23 1 8.2410 7.0006 -3.2482 24 6 6.1966 3.9176 -0.6076 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9564 0.8901 31 1 1.6765 1.9564 -0.8899 32 1 3.7358 3.4499 0.0017 33 1 5.8009 3.3091 2.0375 34 1 5.8715 1.5380 1.8627 35 1 8.0952 2.5064 2.4609 36 1 8.1236 1.7061 0.8709 37 1 9.2677 3.8994 0.7685 38 1 7.7932 4.7017 1.3595 39 1 6.5957 6.3938 -0.6357 40 1 8.0773 7.2498 -1.1269 41 1 8.0212 6.3899 0.4304 42 1 12.2440 6.7819 -2.2315 43 1 5.8204 4.7600 -0.0271 44 1 5.8463 4.0003 -1.6365 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101563494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:04 Heat of formation + Delta-G solvation = -45.483818 kcal Electronic energy + Delta-G solvation = -21266.795052 eV Core-core repulsion = 18218.526230 eV Total energy + Delta-G solvation = -3048.268822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.02694 -38.49297 -35.35283 -34.46138 -33.33369 -31.96519 -29.88620 -29.04245 -27.60251 -25.30225 -23.85444 -22.79469 -21.80624 -20.48095 -20.24746 -18.91065 -17.07325 -16.56509 -16.20436 -15.97088 -15.07443 -14.67656 -14.37624 -14.13925 -14.05661 -13.64631 -13.33949 -13.23162 -13.10267 -12.60521 -12.31156 -12.19010 -12.07890 -11.89709 -11.71015 -11.41493 -11.30741 -10.97013 -10.83428 -10.75315 -10.58021 -10.37738 -10.15902 -9.89704 -9.67818 -9.54626 -9.00876 -8.92777 -8.61956 -7.39455 -6.09635 -4.08451 2.65597 3.15534 3.22560 3.32916 3.35858 4.36354 4.59010 4.66074 4.76582 4.77654 5.08121 5.13947 5.21755 5.24690 5.26590 5.37245 5.38799 5.50205 5.59525 5.66590 5.78486 5.90834 5.91951 5.98697 6.08984 6.11462 6.14202 6.18595 6.28546 6.29342 6.35557 6.49579 6.58051 6.65890 6.76013 6.91366 7.19749 7.52176 7.57024 7.89874 8.05212 8.25948 8.61526 8.96864 9.51870 11.03125 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034483 B = 0.003917 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.788262 B = 7146.501350 C = 7602.475010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.510 3.490 5 O -0.540 6.540 6 N -0.727 5.727 7 C 0.146 3.854 8 H 0.096 0.904 9 C -0.125 4.125 10 C -0.116 4.116 11 C 0.058 3.942 12 N -0.516 5.516 13 C 0.183 3.817 14 H 0.041 0.959 15 C -0.186 4.186 16 C -0.506 4.506 17 H 0.085 0.915 18 C 0.070 3.930 19 N -0.898 5.898 20 Si 0.887 3.113 21 H -0.281 1.281 22 H -0.297 1.297 23 H -0.268 1.268 24 C 0.047 3.953 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.397 0.603 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.024 0.976 39 H 0.029 0.971 40 H 0.045 0.955 41 H 0.054 0.946 42 H 0.264 0.736 43 H 0.031 0.969 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.088 -5.447 5.404 21.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.181 4.181 4 C 0.297 3.703 5 O -0.417 6.417 6 N -0.378 5.378 7 C 0.042 3.958 8 H 0.114 0.886 9 C -0.163 4.163 10 C -0.154 4.154 11 C -0.070 4.070 12 N -0.240 5.240 13 C 0.075 3.925 14 H 0.059 0.941 15 C -0.245 4.245 16 C -0.544 4.544 17 H 0.102 0.898 18 C -0.131 4.131 19 N -0.536 5.536 20 Si 0.718 3.282 21 H -0.208 1.208 22 H -0.224 1.224 23 H -0.194 1.194 24 C -0.082 4.082 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.230 0.770 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.042 0.958 39 H 0.048 0.952 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.049 0.951 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.300 -6.542 5.086 21.004 hybrid contribution -0.918 2.236 -0.031 2.418 sum -20.219 -4.306 5.055 21.281 Atomic orbital electron populations 1.21799 0.95625 1.01893 1.01695 1.21274 0.95077 0.94796 1.03618 1.21729 0.92082 1.00120 1.04208 1.20720 0.90155 0.83725 0.75740 1.90708 1.70501 1.31273 1.49230 1.46138 1.07749 1.08465 1.75409 1.21027 0.77912 0.99954 0.96924 0.88645 1.21921 0.96889 1.01343 0.96178 1.21602 0.94067 0.99530 1.00219 1.22089 1.02290 0.94484 0.88141 1.62007 1.03613 1.42712 1.15655 1.19765 0.96360 0.83162 0.93188 0.94128 1.22827 0.97942 1.01612 1.02105 1.20975 0.87909 1.09438 1.36104 0.89753 1.24917 0.94715 0.97832 0.95682 1.69879 1.05256 1.33708 1.44804 0.86878 0.79514 0.82854 0.78989 1.20831 1.22414 1.19355 1.22229 0.91374 0.94444 1.00136 0.92461 0.92770 0.92711 0.91194 0.91272 0.89124 0.89027 0.76989 0.92628 0.92057 0.91917 0.91106 0.88606 0.95768 0.95220 0.93672 0.92679 0.92591 0.95082 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.11 -0.96 5.22 -26.73 -0.14 -1.10 16 3 C -0.14 -1.17 5.70 -27.88 -0.16 -1.33 16 4 C 0.51 6.33 7.80 -10.99 -0.09 6.25 16 5 O -0.54 -9.01 15.65 5.55 0.09 -8.92 16 6 N -0.73 -8.48 5.08 -53.73 -0.27 -8.76 16 7 C 0.15 2.16 2.62 -67.85 -0.18 1.98 16 8 H 0.10 1.67 7.58 -51.93 -0.39 1.27 16 9 C -0.12 -1.79 5.58 -26.61 -0.15 -1.94 16 10 C -0.12 -1.82 6.09 -26.65 -0.16 -1.98 16 11 C 0.06 1.08 4.75 -3.84 -0.02 1.06 16 12 N -0.52 -10.33 4.67 -228.08 -1.07 -11.40 16 13 C 0.18 4.20 2.00 -68.86 -0.14 4.06 16 14 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 15 C -0.19 -3.91 7.98 37.16 0.30 -3.61 16 16 C -0.51 -13.79 8.44 -34.44 -0.29 -14.08 16 17 H 0.08 2.50 6.64 -52.49 -0.35 2.15 16 18 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 19 N -0.90 -27.01 13.96 55.43 0.77 -26.23 16 20 Si 0.89 21.55 24.37 -169.99 -4.14 17.41 16 21 H -0.28 -6.67 6.87 56.52 0.39 -6.28 16 22 H -0.30 -7.27 7.11 56.52 0.40 -6.86 16 23 H -0.27 -6.24 6.53 56.52 0.37 -5.87 16 24 C 0.05 0.77 4.36 -3.83 -0.02 0.75 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.40 3.49 8.60 -40.82 -0.35 3.14 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.10 2.05 6.02 -51.93 -0.31 1.74 16 38 H 0.02 0.44 6.71 -51.93 -0.35 0.09 16 39 H 0.03 0.53 6.54 -51.93 -0.34 0.19 16 40 H 0.04 1.00 3.27 -51.93 -0.17 0.83 16 41 H 0.05 1.14 6.63 -51.93 -0.34 0.80 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.03 0.48 6.63 -51.93 -0.34 0.13 16 44 H 0.07 1.14 8.12 -51.93 -0.42 0.72 16 LS Contribution 331.87 15.07 5.00 5.00 Total: -1.00 -31.20 331.87 -7.96 -39.16 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -7.57 Total: 2.41 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -0.77 Total: -8.68 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: -0.57 Total: -46.38 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.14 Total: 17.41 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.20 -7.96 -39.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101563494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.319 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds