Wall clock time and date at job start Mon Mar 30 2020 05:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47457 * 2 1 4 4 C 1.50695 * 109.47131 * 180.02562 * 3 2 1 5 5 O 1.21276 * 120.00190 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99610 * 180.02562 * 4 3 2 7 7 C 1.46507 * 119.99613 * 180.02562 * 6 4 3 8 8 H 1.09002 * 109.50471 * 324.99966 * 7 6 4 9 9 C 1.53119 * 109.50198 * 85.07732 * 7 6 4 10 10 C 1.53119 * 109.15731 * 177.63356 * 9 7 6 11 11 C 1.53039 * 109.28129 * 302.34211 * 10 9 7 12 12 N 1.46848 * 109.51997 * 59.18522 * 11 10 9 13 13 C 1.46897 * 111.00171 * 174.16537 * 12 11 10 14 14 H 1.09000 * 109.47656 * 63.94551 * 13 12 11 15 15 C 1.52996 * 109.47323 * 183.95361 * 13 12 11 16 16 C 1.50707 * 109.46803 * 303.95029 * 13 12 11 17 17 H 1.08001 * 119.99837 * 0.02562 * 16 13 12 18 18 C 1.37872 * 120.00098 * 180.02562 * 16 13 12 19 19 N 1.31519 * 120.00063 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 120.00062 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47278 * 59.99733 * 20 18 16 22 22 H 1.48502 * 109.47291 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47239 * 299.99662 * 20 18 16 24 24 C 1.46855 * 111.19639 * 298.25566 * 12 11 10 25 25 H 1.08997 * 109.47278 * 59.99901 * 1 2 3 26 26 H 1.09002 * 109.47100 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46829 * 299.99433 * 1 2 3 28 28 H 1.09004 * 109.47010 * 240.00044 * 2 1 3 29 29 H 1.09001 * 109.47210 * 120.01038 * 2 1 3 30 30 H 1.09004 * 109.46638 * 60.00450 * 3 2 1 31 31 H 1.08994 * 109.47118 * 300.00796 * 3 2 1 32 32 H 0.96998 * 120.00484 * 359.97438 * 6 4 3 33 33 H 1.08999 * 109.52613 * 297.53927 * 9 7 6 34 34 H 1.09004 * 109.52408 * 57.66772 * 9 7 6 35 35 H 1.08998 * 109.50840 * 62.28812 * 10 9 7 36 36 H 1.09009 * 109.50099 * 182.36576 * 10 9 7 37 37 H 1.09001 * 109.46699 * 179.19867 * 11 10 9 38 38 H 1.09004 * 109.46628 * 299.18083 * 11 10 9 39 39 H 1.09004 * 109.46894 * 299.99589 * 15 13 12 40 40 H 1.09000 * 109.47416 * 59.99043 * 15 13 12 41 41 H 1.09001 * 109.47171 * 179.97438 * 15 13 12 42 42 H 0.97000 * 119.99476 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.46449 * 301.72795 * 24 12 11 44 44 H 1.08992 * 109.46444 * 181.76011 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1534 0.3921 -0.0015 6 7 4.2209 2.6096 -0.0002 7 6 5.6859 2.6095 -0.0014 8 1 6.0503 1.7673 0.5869 9 6 6.1959 2.4868 -1.4399 10 6 7.7260 2.5469 -1.4375 11 6 8.1791 3.8565 -0.7880 12 7 7.6666 3.9256 0.5864 13 6 8.1958 5.1033 1.2870 14 1 7.8381 6.0089 0.7969 15 6 7.7201 5.0883 2.7410 16 6 9.7022 5.0744 1.2510 17 1 10.2150 4.2625 0.7567 18 6 10.4256 6.0843 1.8490 19 7 9.8011 7.0732 2.4505 20 14 12.2927 6.0480 1.8050 21 1 12.7550 6.0627 0.3939 22 1 12.8278 7.2386 2.5132 23 1 12.7797 4.8141 2.4726 24 6 6.1982 3.9172 0.6065 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 1.6768 1.9562 0.8901 31 1 1.6767 1.9563 -0.8899 32 1 3.7360 3.4496 0.0001 33 1 5.8694 1.5365 -1.8624 34 1 5.7992 3.3070 -2.0383 35 1 8.1225 1.7039 -0.8718 36 1 8.0935 2.5023 -2.4628 37 1 9.2683 3.8960 -0.7718 38 1 7.7936 4.6991 -1.3621 39 1 6.6305 5.1093 2.7670 40 1 8.0778 4.1828 3.2310 41 1 8.1131 5.9620 3.2610 42 1 10.3101 7.7838 2.8709 43 1 5.8221 4.7595 0.0258 44 1 5.8486 4.0008 1.6355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101563495.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:07 Heat of formation + Delta-G solvation = -54.615760 kcal Electronic energy + Delta-G solvation = -21160.058563 eV Core-core repulsion = 18111.393750 eV Total energy + Delta-G solvation = -3048.664813 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.93385 -38.22379 -35.11487 -34.40670 -33.38726 -31.81380 -29.76652 -28.45953 -27.63645 -25.23567 -23.64121 -22.65471 -21.50953 -20.36314 -19.93587 -19.14722 -17.04116 -16.35496 -16.02667 -15.92069 -15.18365 -14.38171 -14.26760 -14.07176 -13.90233 -13.53680 -13.21473 -13.08646 -12.85793 -12.48816 -12.24135 -12.14886 -11.85926 -11.59170 -11.37441 -10.98113 -10.92975 -10.89903 -10.73484 -10.58047 -10.54017 -10.34231 -10.13317 -9.92029 -9.81562 -9.56789 -8.88870 -8.83018 -8.43556 -7.21762 -6.03329 -4.07915 2.71506 3.23003 3.31517 3.35819 3.39211 4.39515 4.65155 4.71944 4.81168 4.93088 5.16513 5.22580 5.28339 5.29596 5.34716 5.41850 5.44286 5.54834 5.66213 5.77355 5.82587 5.95859 5.98365 6.11868 6.14057 6.21285 6.28373 6.37185 6.40317 6.64518 6.75062 6.77102 6.84872 7.02960 7.13658 7.48691 7.59770 7.70621 7.80618 8.17998 8.29540 8.31929 8.56840 8.98191 9.57247 11.03517 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039472 B = 0.003683 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.197262 B = 7601.045393 C = 8017.673133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.141 4.141 4 C 0.510 3.490 5 O -0.542 6.542 6 N -0.726 5.726 7 C 0.146 3.854 8 H 0.094 0.906 9 C -0.124 4.124 10 C -0.115 4.115 11 C 0.062 3.938 12 N -0.529 5.529 13 C 0.215 3.785 14 H -0.002 1.002 15 C -0.134 4.134 16 C -0.505 4.505 17 H 0.064 0.936 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.276 1.276 24 C 0.049 3.951 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.397 0.603 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.019 0.981 39 H 0.007 0.993 40 H 0.035 0.965 41 H 0.086 0.914 42 H 0.261 0.739 43 H 0.023 0.977 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.263 -7.485 -5.956 18.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.182 4.182 4 C 0.297 3.703 5 O -0.419 6.419 6 N -0.377 5.377 7 C 0.042 3.958 8 H 0.112 0.888 9 C -0.163 4.163 10 C -0.154 4.154 11 C -0.067 4.067 12 N -0.254 5.254 13 C 0.109 3.891 14 H 0.016 0.984 15 C -0.192 4.192 16 C -0.543 4.543 17 H 0.082 0.918 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.202 1.202 24 C -0.080 4.080 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.231 0.769 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.037 0.963 39 H 0.026 0.974 40 H 0.054 0.946 41 H 0.104 0.896 42 H 0.071 0.929 43 H 0.041 0.959 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.603 -8.474 -5.588 17.785 hybrid contribution 0.447 1.345 -0.406 1.474 sum -14.156 -7.130 -5.995 16.946 Atomic orbital electron populations 1.21798 0.95640 1.01856 1.01708 1.21272 0.95057 0.94837 1.03581 1.21728 0.92137 1.00070 1.04227 1.20709 0.90139 0.83742 0.75749 1.90698 1.70528 1.31298 1.49402 1.46149 1.07829 1.08449 1.75232 1.21051 0.77834 1.00180 0.96752 0.88804 1.21913 0.96812 1.01228 0.96349 1.21600 0.94216 0.99533 1.00001 1.22006 1.01724 0.94313 0.88624 1.61976 1.03584 1.45102 1.14766 1.19219 0.94642 0.84684 0.90518 0.98442 1.21861 0.95420 1.02539 0.99336 1.21116 0.90312 1.07664 1.35244 0.91800 1.24927 0.98640 0.95377 0.95242 1.69883 1.35322 1.11422 1.36672 0.86574 0.85359 0.77408 0.78154 1.20330 1.21375 1.20166 1.22235 0.91512 0.93838 1.00446 0.92774 0.92495 0.92695 0.91312 0.91212 0.89002 0.89134 0.76946 0.92190 0.92648 0.91250 0.92115 0.89256 0.96304 0.97398 0.94586 0.89591 0.92916 0.95901 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.11 -1.01 5.22 -26.73 -0.14 -1.15 16 3 C -0.14 -1.25 5.70 -27.89 -0.16 -1.41 16 4 C 0.51 6.67 7.80 -10.99 -0.09 6.58 16 5 O -0.54 -9.35 15.65 5.56 0.09 -9.26 16 6 N -0.73 -9.11 5.08 -53.72 -0.27 -9.38 16 7 C 0.15 2.30 2.62 -67.85 -0.18 2.12 16 8 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 9 C -0.12 -1.88 5.58 -26.61 -0.15 -2.02 16 10 C -0.11 -1.85 6.09 -26.65 -0.16 -2.01 16 11 C 0.06 1.19 5.21 -3.83 -0.02 1.17 16 12 N -0.53 -11.19 4.52 -228.07 -1.03 -12.22 16 13 C 0.21 5.34 2.07 -68.86 -0.14 5.20 16 14 H 0.00 -0.05 8.14 -51.93 -0.42 -0.48 16 15 C -0.13 -3.22 8.74 37.16 0.32 -2.90 16 16 C -0.50 -13.62 7.86 -34.44 -0.27 -13.89 16 17 H 0.06 1.71 6.41 -52.49 -0.34 1.38 16 18 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 19 N -0.89 -25.19 11.32 55.43 0.63 -24.56 16 20 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.05 0.87 4.69 -3.83 -0.02 0.85 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.40 3.88 8.61 -40.82 -0.35 3.53 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 37 H 0.09 1.88 6.04 -51.93 -0.31 1.56 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.01 0.15 6.28 -51.93 -0.33 -0.17 16 40 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 42 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 1.40 6.00 -51.93 -0.31 1.09 16 LS Contribution 341.54 15.07 5.15 5.15 Total: -1.00 -30.12 341.54 -9.01 -39.13 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.82 Total: 1.63 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -0.72 Total: -6.61 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.68 Total: -46.16 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.12 -9.01 -39.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101563495.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.490 kcal (2) G-P(sol) polarization free energy of solvation -30.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds