Wall clock time and date at job start Mon Mar 30 2020 05:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46935 * 2 1 4 4 H 1.08994 * 109.90980 * 53.66025 * 3 2 1 5 5 C 1.53997 * 109.91622 * 174.76933 * 3 2 1 6 6 C 1.54602 * 105.13992 * 120.77150 * 5 3 2 7 7 C 1.54941 * 102.92176 * 21.95903 * 6 5 3 8 8 H 1.09001 * 110.66867 * 81.18024 * 7 6 5 9 9 C 1.52991 * 110.66873 * 204.15081 * 7 6 5 10 10 N 1.47901 * 110.08070 * 292.45496 * 3 2 1 11 11 C 1.46904 * 111.00246 * 94.71234 * 10 3 2 12 12 C 1.50702 * 109.46661 * 62.23383 * 11 10 3 13 13 O 1.21280 * 120.00319 * 353.12055 * 12 11 10 14 14 N 1.34778 * 120.00009 * 173.12636 * 12 11 10 15 15 C 1.46506 * 119.99838 * 359.97438 * 14 12 11 16 16 C 1.46499 * 120.00303 * 180.02562 * 14 12 11 17 17 C 1.50695 * 109.46877 * 89.99846 * 16 14 12 18 18 H 1.07994 * 120.00583 * 359.97438 * 17 16 14 19 19 C 1.37885 * 119.99892 * 180.02562 * 17 16 14 20 20 N 1.31511 * 119.99791 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00062 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47058 * 59.99882 * 21 19 17 23 23 H 1.48502 * 109.46899 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46827 * 299.99326 * 21 19 17 25 25 H 1.08999 * 109.47731 * 307.09754 * 1 2 3 26 26 H 1.09011 * 109.46984 * 67.10240 * 1 2 3 27 27 H 1.08997 * 109.47327 * 187.09586 * 1 2 3 28 28 H 1.08994 * 109.47003 * 239.99926 * 2 1 3 29 29 H 1.09001 * 109.46723 * 119.99614 * 2 1 3 30 30 H 1.08998 * 110.30828 * 239.68909 * 5 3 2 31 31 H 1.09003 * 110.30928 * 1.85819 * 5 3 2 32 32 H 1.08999 * 110.72151 * 140.31491 * 6 5 3 33 33 H 1.08993 * 110.72325 * 263.60019 * 6 5 3 34 34 H 1.09006 * 109.47141 * 63.57303 * 9 7 6 35 35 H 1.09001 * 109.47467 * 183.57705 * 9 7 6 36 36 H 1.09001 * 109.46865 * 303.57594 * 9 7 6 37 37 H 1.08997 * 109.47338 * 182.23593 * 11 10 3 38 38 H 1.08998 * 109.46996 * 302.23780 * 11 10 3 39 39 H 1.08998 * 109.46940 * 90.00268 * 15 14 12 40 40 H 1.09001 * 109.47582 * 210.00452 * 15 14 12 41 41 H 1.09007 * 109.46993 * 330.00699 * 15 14 12 42 42 H 1.09000 * 109.46711 * 209.99637 * 16 14 12 43 43 H 1.08994 * 109.46957 * 329.99471 * 16 14 12 44 44 H 0.97003 * 120.00596 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5911 1.9949 0.8255 5 6 3.5742 1.4565 0.1320 6 6 4.0817 2.1844 -1.1340 7 6 2.8464 3.0064 -1.5798 8 1 2.7675 3.9268 -1.0012 9 6 2.9150 3.3158 -3.0765 10 7 1.7090 2.0981 -1.2838 11 6 0.4494 2.8474 -1.1830 12 6 0.5967 3.9418 -0.1575 13 8 1.6006 4.0071 0.5198 14 7 -0.3872 4.8480 0.0070 15 6 -1.5998 4.7695 -0.8115 16 6 -0.2438 5.9123 1.0035 17 6 0.4102 7.1115 0.3670 18 1 0.6914 7.0836 -0.6753 19 6 0.6507 8.2441 1.1158 20 7 0.3088 8.2779 2.3852 21 14 1.4621 9.7303 0.3271 22 1 0.6213 10.2151 -0.7968 23 1 1.6074 10.8092 1.3371 24 1 2.8023 9.3484 -0.1861 25 1 -0.3634 0.6198 0.8196 26 1 -0.3633 0.3999 -0.9468 27 1 -0.3634 -1.0197 0.1269 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8719 2.0024 1.0272 31 1 3.9606 0.4377 0.1631 32 1 4.9162 2.8426 -0.8920 33 1 4.3657 1.4668 -1.9037 34 1 2.8755 2.3848 -3.6422 35 1 2.0715 3.9470 -3.3562 36 1 3.8470 3.8359 -3.2976 37 1 0.2094 3.2866 -2.1512 38 1 -0.3517 2.1725 -0.8815 39 1 -2.3385 4.1462 -0.3076 40 1 -2.0065 5.7705 -0.9555 41 1 -1.3565 4.3333 -1.7804 42 1 -1.2276 6.1922 1.3802 43 1 0.3735 5.5568 1.8285 44 1 0.4782 9.0745 2.9122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124590798.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:38 Heat of formation + Delta-G solvation = -32.325252 kcal Electronic energy + Delta-G solvation = -22294.635717 eV Core-core repulsion = 19246.937493 eV Total energy + Delta-G solvation = -3047.698224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.23562 -37.81146 -34.80004 -33.63975 -32.74442 -31.96208 -29.90463 -28.14991 -26.43553 -25.64016 -24.98610 -22.69042 -21.92169 -20.29211 -19.94199 -18.30683 -16.59641 -16.48688 -15.75779 -15.15977 -15.10785 -14.80170 -14.47832 -13.94143 -13.32289 -13.29843 -13.15496 -12.83698 -12.53961 -12.24755 -12.15364 -11.96152 -11.88859 -11.78615 -11.44437 -11.21993 -11.14846 -11.00129 -10.78162 -10.59260 -10.47405 -10.39432 -10.21848 -10.19121 -10.00144 -9.62870 -9.50929 -8.45619 -7.78941 -7.63864 -6.06427 -4.11470 3.29684 3.33192 3.34439 3.40016 4.00066 4.19252 4.42911 4.85157 4.97728 5.14598 5.24471 5.28852 5.32151 5.36934 5.45324 5.55512 5.61803 5.75091 5.76196 5.80148 5.84428 5.91152 5.96431 5.99427 6.09136 6.11370 6.14858 6.19583 6.26865 6.33211 6.40460 6.40844 6.63355 6.65953 7.00943 7.22224 7.29896 7.42213 7.51737 7.89452 8.21207 8.39462 8.86912 9.05114 9.53662 11.01552 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021166 B = 0.005841 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.561634 B = 4792.314900 C = 5261.749735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.107 4.107 3 C 0.060 3.940 4 H 0.076 0.924 5 C -0.118 4.118 6 C -0.112 4.112 7 C 0.041 3.959 8 H 0.093 0.907 9 C -0.134 4.134 10 N -0.487 5.487 11 C 0.017 3.983 12 C 0.473 3.527 13 O -0.537 6.537 14 N -0.600 5.600 15 C 0.082 3.918 16 C 0.245 3.755 17 C -0.526 4.526 18 H 0.055 0.945 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.898 3.102 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.045 0.955 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.030 0.970 43 H 0.042 0.958 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.278 -14.178 -8.092 16.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C -0.048 4.048 4 H 0.094 0.906 5 C -0.156 4.156 6 C -0.150 4.150 7 C -0.067 4.067 8 H 0.111 0.889 9 C -0.192 4.192 10 N -0.210 5.210 11 C -0.115 4.115 12 C 0.260 3.740 13 O -0.416 6.416 14 N -0.333 5.333 15 C -0.062 4.062 16 C 0.125 3.875 17 C -0.565 4.565 18 H 0.074 0.926 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.725 3.275 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.202 1.202 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.048 0.952 43 H 0.060 0.940 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.711 -14.398 -7.975 16.474 hybrid contribution 0.299 1.658 0.235 1.701 sum 1.010 -12.739 -7.740 14.940 Atomic orbital electron populations 1.21871 0.96442 1.00889 1.01837 1.21551 0.95657 0.96054 1.01284 1.22496 0.95496 0.94474 0.92321 0.90595 1.22306 0.94812 0.99971 0.98524 1.22400 0.97126 0.98402 0.97083 1.23131 0.89799 0.97320 0.96400 0.88923 1.21680 1.01126 1.01049 0.95332 1.65013 1.01279 1.25411 1.29267 1.22594 0.95358 0.94697 0.98897 1.21519 0.83712 0.83603 0.85207 1.90611 1.28605 1.74805 1.47623 1.48318 1.16931 1.29438 1.38583 1.21658 0.87680 1.02636 0.94267 1.19263 0.97385 0.83721 0.87110 1.21368 1.40037 0.98150 0.96907 0.92642 1.24935 0.95606 0.98733 0.94787 1.69920 1.47458 1.29300 1.06713 0.86568 0.80069 0.81945 0.78907 1.20235 1.21138 1.20196 0.93166 0.92053 0.93321 0.91689 0.92325 0.91454 0.91932 0.91648 0.91679 0.92403 0.93206 0.92609 0.88675 0.88029 0.93687 0.90770 0.92375 0.95190 0.93977 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.65 37.16 0.32 -1.43 16 2 C -0.11 -1.32 5.39 -26.73 -0.14 -1.46 16 3 C 0.06 0.91 1.88 -66.64 -0.13 0.79 16 4 H 0.08 1.39 5.65 -51.93 -0.29 1.10 16 5 C -0.12 -1.70 6.57 -25.37 -0.17 -1.86 16 6 C -0.11 -1.59 6.50 -24.86 -0.16 -1.75 16 7 C 0.04 0.66 2.50 -65.79 -0.16 0.49 16 8 H 0.09 1.89 5.20 -51.93 -0.27 1.62 16 9 C -0.13 -1.84 9.43 37.15 0.35 -1.49 16 10 N -0.49 -7.36 4.76 -216.22 -1.03 -8.39 16 11 C 0.02 0.25 4.31 -4.97 -0.02 0.23 16 12 C 0.47 9.58 6.56 -10.98 -0.07 9.50 16 13 O -0.54 -12.77 11.37 5.56 0.06 -12.71 16 14 N -0.60 -12.62 2.86 -182.95 -0.52 -13.14 16 15 C 0.08 1.29 10.27 59.85 0.61 1.90 16 16 C 0.24 6.40 5.16 -5.20 -0.03 6.38 16 17 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 18 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 21 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H 0.05 0.62 8.13 -51.93 -0.42 0.20 16 26 H 0.06 0.70 6.36 -51.92 -0.33 0.37 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.76 7.69 -51.93 -0.40 0.36 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.82 8.05 -51.93 -0.42 0.40 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.70 7.83 -51.93 -0.41 0.29 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 1.34 6.65 -51.93 -0.35 0.99 16 38 H 0.10 1.38 5.29 -51.93 -0.27 1.10 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 41 H 0.06 0.75 6.25 -51.93 -0.32 0.42 16 42 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 43 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 337.12 15.07 5.08 5.08 Total: -1.00 -31.42 337.12 -8.35 -39.77 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.64 Total: 0.72 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -0.02 Total: -2.27 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.82 Total: -47.49 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.06 Total: -12.71 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.42 -8.35 -39.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124590798.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.444 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds