Wall clock time and date at job start Mon Mar 30 2020 05:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46466 * 2 1 4 4 H 1.08999 * 109.52378 * 55.00639 * 3 2 1 5 5 C 1.53116 * 109.52422 * 294.87260 * 3 2 1 6 6 C 1.53043 * 109.27439 * 182.50705 * 5 3 2 7 7 N 1.46846 * 109.57788 * 59.08666 * 6 5 3 8 8 C 1.46850 * 111.19695 * 298.29286 * 7 6 5 9 9 H 1.09000 * 109.46109 * 301.72448 * 8 7 6 10 10 C 1.50693 * 109.45222 * 181.75006 * 8 7 6 11 11 O 1.21285 * 120.00064 * 333.73956 * 10 8 7 12 12 N 1.34779 * 120.00127 * 153.74042 * 10 8 7 13 13 C 1.46498 * 120.00420 * 185.47731 * 12 10 8 14 14 C 1.53006 * 109.47188 * 94.85386 * 13 12 10 15 15 C 1.46499 * 119.99938 * 5.47638 * 12 10 8 16 16 C 1.50700 * 109.47403 * 89.99699 * 15 12 10 17 17 H 1.08004 * 119.99756 * 0.02562 * 16 15 12 18 18 C 1.37871 * 120.00100 * 179.97438 * 16 15 12 19 19 N 1.31511 * 120.00334 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99984 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47034 * 59.99816 * 20 18 16 22 22 H 1.48496 * 109.47192 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46823 * 300.00072 * 20 18 16 24 24 C 1.53037 * 109.52184 * 61.73909 * 8 7 6 25 25 H 1.09001 * 109.47005 * 299.99202 * 1 2 3 26 26 H 1.09000 * 109.46739 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47508 * 60.00125 * 1 2 3 28 28 H 1.08996 * 109.47508 * 119.99875 * 2 1 3 29 29 H 1.09001 * 109.47005 * 240.00798 * 2 1 3 30 30 H 1.08998 * 109.50783 * 302.38438 * 5 3 2 31 31 H 1.09004 * 109.49875 * 62.50351 * 5 3 2 32 32 H 1.09004 * 109.40827 * 299.07020 * 6 5 3 33 33 H 1.09004 * 109.45441 * 179.13334 * 6 5 3 34 34 H 1.00893 * 111.00075 * 174.19438 * 7 6 5 35 35 H 1.08998 * 109.47559 * 214.85834 * 13 12 10 36 36 H 1.09001 * 109.46937 * 334.85656 * 13 12 10 37 37 H 1.08997 * 109.46938 * 175.01876 * 14 13 12 38 38 H 1.08996 * 109.47177 * 295.01771 * 14 13 12 39 39 H 1.08999 * 109.46790 * 55.01757 * 14 13 12 40 40 H 1.08998 * 109.47429 * 210.00215 * 15 12 10 41 41 H 1.09005 * 109.47126 * 329.99748 * 15 12 10 42 42 H 0.97001 * 120.00082 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.49905 * 180.87849 * 24 8 7 44 44 H 1.08993 * 109.50318 * 60.76663 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6058 1.9824 0.8416 5 6 1.6381 2.1274 -1.3093 6 6 2.2042 3.5491 -1.3302 7 7 3.6669 3.4982 -1.2110 8 6 4.0751 2.8878 0.0607 9 1 3.6534 3.4574 0.8888 10 6 5.5786 2.8944 0.1608 11 8 6.2535 2.8969 -0.8469 12 7 6.1735 2.8974 1.3702 13 6 7.6295 3.0249 1.4701 14 6 7.9993 4.4937 1.6866 15 6 5.3641 2.7732 2.5850 16 6 5.2144 1.3168 2.9422 17 1 5.6763 0.5595 2.3261 18 6 4.4885 0.9513 4.0559 19 7 3.9265 1.8735 4.8063 20 14 4.3035 -0.8540 4.4990 21 1 5.6449 -1.4458 4.7348 22 1 3.4840 -0.9798 5.7310 23 1 3.6350 -1.5714 3.3838 24 6 3.5662 1.4458 0.1224 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 2.0390 1.5646 -2.1523 31 1 0.5511 2.1663 -1.3809 32 1 1.7913 4.1157 -0.4955 33 1 1.9328 4.0341 -2.2679 34 1 4.0705 4.4167 -1.3172 35 1 7.9894 2.4319 2.3109 36 1 8.0897 2.6663 0.5493 37 1 9.0738 4.5777 1.8492 38 1 7.7185 5.0725 0.8067 39 1 7.4688 4.8772 2.5582 40 1 5.8546 3.2995 3.4038 41 1 4.3797 3.2079 2.4116 42 1 3.4155 1.6162 5.5897 43 1 3.8559 0.9981 1.0731 44 1 3.9983 0.8720 -0.6973 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130839564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:43 Heat of formation + Delta-G solvation = -57.950575 kcal Electronic energy + Delta-G solvation = -22277.046296 eV Core-core repulsion = 19228.236874 eV Total energy + Delta-G solvation = -3048.809422 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.65555 -37.76551 -35.19555 -34.12579 -32.82309 -31.26763 -29.71472 -29.54987 -27.06475 -24.81330 -23.26237 -22.96221 -22.33014 -20.84114 -19.33263 -18.16045 -16.60485 -16.34575 -16.09595 -15.23407 -14.53571 -14.51892 -14.21076 -14.00198 -13.69883 -13.31386 -13.16982 -12.78643 -12.72984 -12.38367 -12.17846 -11.84574 -11.67131 -11.51803 -11.46692 -11.26970 -11.01166 -10.92350 -10.72677 -10.68846 -10.48886 -10.24717 -10.18866 -10.06557 -9.81104 -9.67601 -8.80424 -8.56898 -7.99069 -7.67702 -6.20759 -4.26857 3.22031 3.27411 3.29628 3.44686 3.84985 4.30589 4.65968 5.07918 5.08676 5.12536 5.18178 5.44368 5.48265 5.54505 5.66733 5.69769 5.74612 5.81145 5.84277 5.89806 5.94694 6.03729 6.06987 6.17900 6.28427 6.31950 6.36778 6.40445 6.42654 6.46593 6.61381 6.65046 6.78561 6.87423 7.00006 7.16397 7.36031 7.59402 7.69164 7.74775 8.04259 8.37877 8.78350 9.09494 9.39700 10.85566 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.011500 B = 0.010001 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.132780 B = 2799.054386 C = 4713.894954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.084 4.084 4 H 0.069 0.931 5 C -0.112 4.112 6 C 0.062 3.938 7 N -0.671 5.671 8 C 0.082 3.918 9 H 0.062 0.938 10 C 0.519 3.481 11 O -0.559 6.559 12 N -0.598 5.598 13 C 0.113 3.887 14 C -0.163 4.163 15 C 0.236 3.764 16 C -0.534 4.534 17 H 0.062 0.938 18 C 0.068 3.932 19 N -0.889 5.889 20 Si 0.891 3.109 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.108 4.108 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.340 0.660 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.034 0.966 41 H 0.038 0.962 42 H 0.265 0.735 43 H 0.108 0.892 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.901 1.867 -6.644 7.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.103 4.103 4 H 0.087 0.913 5 C -0.150 4.150 6 C -0.068 4.068 7 N -0.304 5.304 8 C -0.030 4.030 9 H 0.079 0.921 10 C 0.306 3.694 11 O -0.439 6.439 12 N -0.329 5.329 13 C -0.011 4.011 14 C -0.221 4.221 15 C 0.116 3.884 16 C -0.572 4.572 17 H 0.080 0.920 18 C -0.135 4.135 19 N -0.527 5.527 20 Si 0.718 3.282 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.146 4.146 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.157 0.843 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.126 0.874 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.601 1.313 -7.320 8.263 hybrid contribution -0.388 -0.224 1.193 1.275 sum -3.989 1.090 -6.127 7.392 Atomic orbital electron populations 1.21803 0.96400 1.01009 1.01578 1.21527 0.95276 0.96653 1.02120 1.21167 0.95980 0.95798 0.97306 0.91286 1.21705 0.99297 0.95538 0.98450 1.21891 0.87740 0.97141 0.99984 1.60021 1.08411 1.27166 1.34775 1.21371 0.92547 0.98329 0.90771 0.92062 1.20334 0.89868 0.76108 0.83083 1.90584 1.65844 1.51467 1.35962 1.48247 1.06905 1.70186 1.07569 1.21220 0.81678 0.95858 1.02313 1.22111 1.00661 0.97647 1.01675 1.19449 0.90611 0.97285 0.81047 1.21409 1.33202 0.92126 1.10482 0.92008 1.24903 0.95172 0.97619 0.95818 1.69906 1.33704 1.32884 1.16247 0.86659 0.78383 0.85104 0.78040 1.20127 1.21167 1.19819 1.21759 0.94165 0.93838 1.04848 0.92825 0.93301 0.92846 0.91603 0.92294 0.91421 0.91946 0.95521 0.91132 0.84253 0.90718 0.90835 0.92408 0.93135 0.92496 0.94784 0.94432 0.92478 0.87392 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.67 37.16 0.36 -1.51 16 2 C -0.12 -1.75 5.41 -26.73 -0.14 -1.89 16 3 C -0.08 -1.34 2.25 -90.49 -0.20 -1.55 16 4 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 5 C -0.11 -1.56 5.08 -26.65 -0.14 -1.69 16 6 C 0.06 0.87 6.55 -3.83 -0.03 0.85 16 7 N -0.67 -11.38 6.14 -107.98 -0.66 -12.05 16 8 C 0.08 1.57 2.11 -68.88 -0.14 1.43 16 9 H 0.06 1.22 6.15 -51.93 -0.32 0.91 16 10 C 0.52 11.12 6.77 -10.99 -0.07 11.05 16 11 O -0.56 -13.13 16.12 5.55 0.09 -13.04 16 12 N -0.60 -12.66 2.46 -175.06 -0.43 -13.09 16 13 C 0.11 2.12 6.22 -4.04 -0.03 2.09 16 14 C -0.16 -2.60 10.24 37.16 0.38 -2.22 16 15 C 0.24 5.49 4.96 -5.19 -0.03 5.46 16 16 C -0.53 -13.38 7.07 -34.44 -0.24 -13.63 16 17 H 0.06 1.59 7.78 -52.48 -0.41 1.18 16 18 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -23.79 13.29 55.43 0.74 -23.06 16 20 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 C -0.11 -2.06 4.60 -26.65 -0.12 -2.18 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.60 6.63 -51.93 -0.34 0.25 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.75 6.70 -51.93 -0.35 0.40 16 32 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.34 5.49 8.78 -39.30 -0.35 5.14 16 35 H 0.07 1.38 8.11 -51.93 -0.42 0.96 16 36 H 0.07 1.41 7.22 -51.93 -0.37 1.03 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.03 0.83 8.07 -51.93 -0.42 0.42 16 41 H 0.04 0.91 5.79 -51.93 -0.30 0.61 16 42 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 43 H 0.11 2.34 5.46 -51.93 -0.28 2.06 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 341.96 15.07 5.15 5.15 Total: -1.00 -27.66 341.96 -8.41 -36.07 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -7.77 Total: 7.09 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -0.50 Total: -2.15 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: -0.36 Total: -48.20 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.09 Total: -13.04 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.66 -8.41 -36.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130839564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.884 kcal (2) G-P(sol) polarization free energy of solvation -27.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds