Wall clock time and date at job start Mon Mar 30 2020 05:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46466 * 2 1 4 4 H 1.08999 * 109.52378 * 55.00639 * 3 2 1 5 5 C 1.53116 * 109.52422 * 294.87260 * 3 2 1 6 6 C 1.53043 * 109.27439 * 182.50705 * 5 3 2 7 7 N 1.46846 * 109.57788 * 59.08666 * 6 5 3 8 8 C 1.46850 * 111.19695 * 298.29286 * 7 6 5 9 9 H 1.09000 * 109.46109 * 301.72448 * 8 7 6 10 10 C 1.50693 * 109.45222 * 181.75006 * 8 7 6 11 11 O 1.21285 * 120.00064 * 333.73956 * 10 8 7 12 12 N 1.34779 * 120.00127 * 153.74042 * 10 8 7 13 13 C 1.46498 * 120.00420 * 185.47731 * 12 10 8 14 14 C 1.53006 * 109.47188 * 94.85386 * 13 12 10 15 15 C 1.46499 * 119.99938 * 5.47638 * 12 10 8 16 16 C 1.50700 * 109.47403 * 89.99699 * 15 12 10 17 17 H 1.08004 * 119.99756 * 0.02562 * 16 15 12 18 18 C 1.37871 * 120.00100 * 179.97438 * 16 15 12 19 19 N 1.31511 * 120.00334 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99984 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47034 * 59.99816 * 20 18 16 22 22 H 1.48496 * 109.47192 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46823 * 300.00072 * 20 18 16 24 24 C 1.53037 * 109.52184 * 61.73909 * 8 7 6 25 25 H 1.09001 * 109.47005 * 299.99202 * 1 2 3 26 26 H 1.09000 * 109.46739 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47508 * 60.00125 * 1 2 3 28 28 H 1.08996 * 109.47508 * 119.99875 * 2 1 3 29 29 H 1.09001 * 109.47005 * 240.00798 * 2 1 3 30 30 H 1.08998 * 109.50783 * 302.38438 * 5 3 2 31 31 H 1.09004 * 109.49875 * 62.50351 * 5 3 2 32 32 H 1.09004 * 109.40827 * 299.07020 * 6 5 3 33 33 H 1.09004 * 109.45441 * 179.13334 * 6 5 3 34 34 H 1.00893 * 111.00075 * 174.19438 * 7 6 5 35 35 H 1.08998 * 109.47559 * 214.85834 * 13 12 10 36 36 H 1.09001 * 109.46937 * 334.85656 * 13 12 10 37 37 H 1.08997 * 109.46938 * 175.01876 * 14 13 12 38 38 H 1.08996 * 109.47177 * 295.01771 * 14 13 12 39 39 H 1.08999 * 109.46790 * 55.01757 * 14 13 12 40 40 H 1.08998 * 109.47429 * 210.00215 * 15 12 10 41 41 H 1.09005 * 109.47126 * 329.99748 * 15 12 10 42 42 H 0.97001 * 120.00082 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.49905 * 180.87849 * 24 8 7 44 44 H 1.08993 * 109.50318 * 60.76663 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6058 1.9824 0.8416 5 6 1.6381 2.1274 -1.3093 6 6 2.2042 3.5491 -1.3302 7 7 3.6669 3.4982 -1.2110 8 6 4.0751 2.8878 0.0607 9 1 3.6534 3.4574 0.8888 10 6 5.5786 2.8944 0.1608 11 8 6.2535 2.8969 -0.8469 12 7 6.1735 2.8974 1.3702 13 6 7.6295 3.0249 1.4701 14 6 7.9993 4.4937 1.6866 15 6 5.3641 2.7732 2.5850 16 6 5.2144 1.3168 2.9422 17 1 5.6763 0.5595 2.3261 18 6 4.4885 0.9513 4.0559 19 7 3.9265 1.8735 4.8063 20 14 4.3035 -0.8540 4.4990 21 1 5.6449 -1.4458 4.7348 22 1 3.4840 -0.9798 5.7310 23 1 3.6350 -1.5714 3.3838 24 6 3.5662 1.4458 0.1224 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 2.0390 1.5646 -2.1523 31 1 0.5511 2.1663 -1.3809 32 1 1.7913 4.1157 -0.4955 33 1 1.9328 4.0341 -2.2679 34 1 4.0705 4.4167 -1.3172 35 1 7.9894 2.4319 2.3109 36 1 8.0897 2.6663 0.5493 37 1 9.0738 4.5777 1.8492 38 1 7.7185 5.0725 0.8067 39 1 7.4688 4.8772 2.5582 40 1 5.8546 3.2995 3.4038 41 1 4.3797 3.2079 2.4116 42 1 3.4155 1.6162 5.5897 43 1 3.8559 0.9981 1.0731 44 1 3.9983 0.8720 -0.6973 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130839564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:43 Heat of formation + Delta-G solvation = -74.118834 kcal Electronic energy + Delta-G solvation = -22277.747404 eV Core-core repulsion = 19228.236874 eV Total energy + Delta-G solvation = -3049.510530 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.25983 -39.19966 -36.95218 -35.41784 -34.72355 -32.77458 -31.18379 -30.74558 -28.96729 -26.15342 -25.02262 -24.47904 -23.66250 -22.17147 -20.65338 -19.84021 -18.49857 -18.04501 -17.67287 -16.81670 -16.36939 -15.83028 -15.60413 -15.37928 -15.10270 -14.68966 -14.51569 -14.38442 -14.18112 -13.93395 -13.62065 -13.38569 -13.24858 -13.14302 -12.72697 -12.67015 -12.59415 -12.55076 -12.25845 -12.15316 -11.93998 -11.83105 -11.68459 -11.50888 -11.47414 -11.01430 -10.62886 -10.38968 -9.46591 -9.36375 -8.19956 -6.31758 1.40816 1.42171 1.48768 1.72549 2.22918 2.42443 3.09942 3.27779 3.66319 3.83567 3.90479 4.04144 4.18611 4.27509 4.34057 4.39427 4.40633 4.53847 4.57092 4.66348 4.70429 4.75519 4.82219 4.92022 4.96236 4.99286 5.03421 5.12459 5.13442 5.16435 5.23226 5.26308 5.30357 5.40454 5.50159 5.58488 5.64850 5.83765 6.03246 6.06543 6.39680 6.56734 6.81515 7.31556 7.42348 8.85407 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.011500 B = 0.010001 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.132780 B = 2799.054386 C = 4713.894954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C -0.080 4.080 4 H 0.057 0.943 5 C -0.106 4.106 6 C 0.059 3.941 7 N -0.677 5.677 8 C 0.090 3.910 9 H 0.050 0.950 10 C 0.514 3.486 11 O -0.581 6.581 12 N -0.600 5.600 13 C 0.106 3.894 14 C -0.151 4.151 15 C 0.253 3.747 16 C -0.535 4.535 17 H 0.050 0.950 18 C 0.031 3.969 19 N -0.916 5.916 20 Si 0.943 3.057 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.269 1.269 24 C -0.102 4.102 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.030 0.970 33 H 0.099 0.901 34 H 0.344 0.656 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.046 0.954 39 H 0.051 0.949 40 H 0.021 0.979 41 H 0.028 0.972 42 H 0.267 0.733 43 H 0.077 0.923 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.910 1.761 -7.514 9.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C -0.099 4.099 4 H 0.075 0.925 5 C -0.143 4.143 6 C -0.070 4.070 7 N -0.310 5.310 8 C -0.023 4.023 9 H 0.068 0.932 10 C 0.302 3.698 11 O -0.462 6.462 12 N -0.331 5.331 13 C -0.017 4.017 14 C -0.209 4.209 15 C 0.132 3.868 16 C -0.574 4.574 17 H 0.068 0.932 18 C -0.170 4.170 19 N -0.555 5.555 20 Si 0.769 3.231 21 H -0.199 1.199 22 H -0.207 1.207 23 H -0.194 1.194 24 C -0.141 4.141 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.048 0.952 33 H 0.117 0.883 34 H 0.162 0.838 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.039 0.961 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.603 1.212 -8.192 9.474 hybrid contribution -0.021 -0.179 1.443 1.454 sum -4.624 1.033 -6.749 8.246 Atomic orbital electron populations 1.21765 0.94128 1.02085 1.02263 1.21509 0.97247 0.95463 1.01289 1.21137 0.93441 0.96961 0.98380 0.92473 1.21687 1.01043 0.94969 0.96610 1.22064 0.85719 0.97633 1.01557 1.60051 1.10519 1.27441 1.32992 1.21221 0.90886 0.98465 0.91686 0.93216 1.20758 0.90890 0.75448 0.82685 1.90559 1.66580 1.52651 1.36432 1.48297 1.07900 1.69954 1.06983 1.21413 0.80253 0.97975 1.02072 1.22007 1.02580 0.95152 1.01164 1.19103 0.90222 0.96158 0.81303 1.21482 1.32955 0.92640 1.10311 0.93157 1.25494 0.94884 1.00920 0.95743 1.69985 1.34377 1.34432 1.16677 0.85830 0.78330 0.81095 0.77891 1.19941 1.20675 1.19390 1.21632 0.96637 0.93284 1.02504 0.93243 0.92115 0.90995 0.93950 0.91663 0.91602 0.89049 0.95191 0.88294 0.83808 0.90759 0.91239 0.89327 0.93524 0.93012 0.96090 0.95446 0.92359 0.90499 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.67 71.98 0.70 -2.57 16 2 C -0.12 -3.36 5.41 30.60 0.17 -3.19 16 3 C -0.08 -2.53 2.25 -10.71 -0.02 -2.55 16 4 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 5 C -0.11 -2.68 5.08 30.65 0.16 -2.52 16 6 C 0.06 1.52 6.55 86.33 0.57 2.09 16 7 N -0.68 -22.35 6.14 -495.55 -3.04 -25.39 16 8 C 0.09 3.49 2.11 44.19 0.09 3.58 16 9 H 0.05 2.04 6.15 -2.39 -0.01 2.03 16 10 C 0.51 22.38 6.77 87.65 0.59 22.98 16 11 O -0.58 -27.49 16.12 -3.05 -0.05 -27.54 16 12 N -0.60 -25.94 2.46 -826.15 -2.03 -27.97 16 13 C 0.11 3.97 6.22 86.38 0.54 4.51 16 14 C -0.15 -4.69 10.24 71.98 0.74 -3.95 16 15 C 0.25 12.07 4.96 85.63 0.43 12.49 16 16 C -0.54 -27.41 7.07 25.60 0.18 -27.23 16 17 H 0.05 2.66 7.78 -2.91 -0.02 2.63 16 18 C 0.03 1.57 5.46 84.65 0.46 2.04 16 19 N -0.92 -49.44 13.29 21.44 0.28 -49.16 16 20 Si 0.94 41.33 29.54 68.60 2.03 43.36 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 24 C -0.10 -3.96 4.60 30.65 0.14 -3.82 16 25 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 1.35 6.63 -2.39 -0.02 1.34 16 28 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.09 1.83 6.70 -2.38 -0.02 1.82 16 32 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.34 10.80 8.78 -89.70 -0.79 10.01 16 35 H 0.07 2.77 8.11 -2.39 -0.02 2.75 16 36 H 0.07 2.67 7.22 -2.39 -0.02 2.65 16 37 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16 41 H 0.03 1.37 5.79 -2.38 -0.01 1.36 16 42 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 43 H 0.08 3.45 5.46 -2.39 -0.01 3.44 16 44 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -59.13 341.96 2.10 -57.03 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 0.18 Total: 27.82 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 4.73 Total: 1.85 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -4.79 Total: -102.53 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.05 Total: -27.54 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -59.13 2.10 -57.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130839564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.087 kcal (2) G-P(sol) polarization free energy of solvation -59.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds