Wall clock time and date at job start Mon Mar 30 2020 05:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47141 * 2 1 4 4 H 1.09002 * 109.47029 * 55.00750 * 3 2 1 5 5 C 1.50701 * 109.47088 * 175.00288 * 3 2 1 6 6 H 1.08004 * 119.99844 * 120.00377 * 5 3 2 7 7 C 1.37874 * 120.00094 * 300.00476 * 5 3 2 8 8 N 1.31518 * 120.00100 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00274 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46960 * 59.99533 * 9 7 5 11 11 H 1.48493 * 109.47678 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46940 * 300.00051 * 9 7 5 13 13 N 1.46496 * 109.47465 * 295.00453 * 3 2 1 14 14 C 1.34779 * 119.99778 * 84.99450 * 13 3 2 15 15 O 1.21278 * 119.99926 * 0.02562 * 14 13 3 16 16 C 1.50704 * 119.99546 * 179.97438 * 14 13 3 17 17 H 1.08999 * 109.46370 * 40.02558 * 16 14 13 18 18 C 1.53032 * 109.46293 * 280.05616 * 16 14 13 19 19 C 1.53124 * 109.28012 * 180.80757 * 18 16 14 20 20 H 1.08999 * 109.52008 * 297.75553 * 19 18 16 21 21 C 1.52995 * 109.52544 * 177.62063 * 19 18 16 22 22 C 1.52998 * 109.47093 * 174.99766 * 21 19 18 23 23 C 1.53119 * 109.15841 * 57.65244 * 19 18 16 24 24 C 1.53040 * 109.28089 * 302.34776 * 23 19 18 25 25 N 1.46846 * 109.45995 * 160.00522 * 16 14 13 26 26 H 1.09004 * 109.46699 * 299.99175 * 1 2 3 27 27 H 1.09000 * 109.47418 * 59.99463 * 1 2 3 28 28 H 1.09003 * 109.47403 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46699 * 240.00825 * 2 1 3 30 30 H 1.09000 * 109.47418 * 120.00536 * 2 1 3 31 31 H 0.96998 * 119.99824 * 180.02562 * 8 7 5 32 32 H 0.97006 * 120.00112 * 265.00029 * 13 3 2 33 33 H 1.08999 * 109.50710 * 300.74605 * 18 16 14 34 34 H 1.08994 * 109.50574 * 60.82555 * 18 16 14 35 35 H 1.08999 * 109.47534 * 295.00064 * 21 19 18 36 36 H 1.09002 * 109.47076 * 55.00143 * 21 19 18 37 37 H 1.09002 * 109.46851 * 60.00240 * 22 21 19 38 38 H 1.09001 * 109.47232 * 179.97438 * 22 21 19 39 39 H 1.09004 * 109.47622 * 300.00381 * 22 21 19 40 40 H 1.09004 * 109.50189 * 62.29271 * 23 19 18 41 41 H 1.09001 * 109.50740 * 182.36562 * 23 19 18 42 42 H 1.08996 * 109.46572 * 299.16374 * 24 23 19 43 43 H 1.09004 * 109.46207 * 179.19455 * 24 23 19 44 44 H 1.00904 * 111.00089 * 305.85757 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8783 1.2278 8 7 3.4063 0.3373 2.1732 9 14 6.0050 0.8811 1.3816 10 1 6.4995 2.2814 1.3820 11 1 6.3979 0.2176 2.6505 12 1 6.5975 0.1473 0.2345 13 7 1.6524 2.0976 -1.2517 14 6 0.4350 2.6644 -1.3667 15 8 -0.3393 2.6326 -0.4338 16 6 0.0365 3.3388 -2.6542 17 1 0.3961 2.7508 -3.4986 18 6 0.6528 4.7385 -2.7086 19 6 0.2289 5.4274 -4.0088 20 1 0.6102 4.8641 -4.8605 21 6 0.7932 6.8490 -4.0418 22 6 0.4753 7.4927 -5.3929 23 6 -1.3000 5.4807 -4.0739 24 6 -1.8597 4.0594 -3.9799 25 7 -1.4267 3.4440 -2.7189 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8932 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.8294 -0.0606 2.9500 32 1 2.2718 2.1233 -1.9978 33 1 0.3045 5.3229 -1.8570 34 1 1.7393 4.6593 -2.6756 35 1 0.3416 7.4379 -3.2435 36 1 1.8736 6.8144 -3.9011 37 1 -0.6050 7.5273 -5.5336 38 1 0.8770 8.5058 -5.4163 39 1 0.9270 6.9039 -6.1913 40 1 -1.6790 6.0768 -3.2437 41 1 -1.6086 5.9323 -5.0167 42 1 -1.4913 3.4678 -4.8180 43 1 -2.9487 4.0951 -4.0116 44 1 -1.8602 2.5421 -2.5891 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131190029.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:17 Heat of formation + Delta-G solvation = -63.925663 kcal Electronic energy + Delta-G solvation = -21555.059552 eV Core-core repulsion = 18505.991031 eV Total energy + Delta-G solvation = -3049.068521 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.73229 -37.98244 -35.10630 -34.32277 -32.40722 -31.42814 -30.32835 -29.89600 -27.01405 -24.89470 -23.40414 -22.87917 -21.73178 -20.02585 -19.62196 -19.21354 -17.31383 -16.21573 -15.73249 -15.15839 -14.95374 -14.65472 -14.53547 -14.00668 -13.87527 -13.48158 -13.31151 -13.09526 -12.65185 -12.49499 -12.04841 -11.85110 -11.72549 -11.42870 -11.26194 -11.22629 -11.15315 -10.96877 -10.79916 -10.64233 -10.57652 -10.29403 -10.20483 -10.13933 -9.61149 -9.03467 -8.78555 -8.47094 -8.28918 -7.75711 -6.10351 -4.19760 3.26156 3.31695 3.32546 3.45219 3.89755 4.33388 4.49849 4.68453 4.72302 4.83116 5.13428 5.20548 5.21647 5.26547 5.32662 5.43960 5.50446 5.54547 5.65471 5.74763 5.81871 5.87296 5.93768 5.99787 6.08241 6.18436 6.23511 6.40524 6.45725 6.46978 6.67662 7.03232 7.06366 7.23876 7.39583 7.45011 7.50932 7.64555 7.77627 7.93608 8.20680 8.72858 8.81807 9.21738 9.48099 10.94908 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022252 B = 0.004802 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.012415 B = 5829.299562 C = 6855.966556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.710 5.710 14 C 0.502 3.498 15 O -0.531 6.531 16 C 0.073 3.927 17 H 0.049 0.951 18 C -0.101 4.101 19 C -0.087 4.087 20 H 0.066 0.934 21 C -0.119 4.119 22 C -0.152 4.152 23 C -0.113 4.113 24 C 0.060 3.940 25 N -0.666 5.666 26 H 0.050 0.950 27 H 0.036 0.964 28 H 0.021 0.979 29 H 0.029 0.971 30 H 0.099 0.901 31 H 0.265 0.735 32 H 0.386 0.614 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.026 0.974 43 H 0.074 0.926 44 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.034 8.397 -14.429 17.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.359 5.359 14 C 0.285 3.715 15 O -0.408 6.408 16 C -0.041 4.041 17 H 0.067 0.933 18 C -0.139 4.139 19 C -0.105 4.105 20 H 0.085 0.915 21 C -0.157 4.157 22 C -0.209 4.209 23 C -0.151 4.151 24 C -0.070 4.070 25 N -0.299 5.299 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.041 0.959 29 H 0.048 0.952 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.218 0.782 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.044 0.956 43 H 0.093 0.907 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.590 8.844 -13.179 17.185 hybrid contribution 1.504 -0.844 -0.902 1.946 sum -5.086 8.001 -14.080 16.975 Atomic orbital electron populations 1.21829 0.98368 0.97920 1.01195 1.21935 0.92590 0.99923 1.02173 1.18748 0.94083 0.89074 0.81120 0.93363 1.21201 0.90784 1.39003 1.06252 0.92219 1.24880 0.98517 0.94840 0.95397 1.69886 1.35178 1.37596 1.09313 0.86532 0.84978 0.78295 0.77423 1.20204 1.21141 1.20210 1.46503 1.14707 1.56161 1.18492 1.20185 0.82948 0.79322 0.88996 1.90674 1.51336 1.58845 1.39933 1.21465 0.89487 0.97123 0.96004 0.93280 1.21572 0.99965 0.94007 0.98371 1.21225 0.95632 0.96036 0.97650 0.91538 1.21550 1.00958 0.95481 0.97690 1.21810 1.01564 1.00235 0.97341 1.21700 0.95024 0.96510 1.01854 1.21927 0.99813 0.95332 0.89886 1.59953 1.05642 1.29700 1.34625 0.93091 0.94449 0.95944 0.95180 0.88327 0.92534 0.78225 0.90493 0.91009 0.91814 0.91865 0.92600 0.92995 0.92929 0.91014 0.91659 0.95599 0.90740 0.83310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.83 2.24 -69.08 -0.15 6.67 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -14.06 8.73 -34.44 -0.30 -14.36 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.76 11.29 55.43 0.63 -24.13 16 9 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.71 -14.62 5.02 -54.93 -0.28 -14.89 16 14 C 0.50 9.90 5.56 -10.98 -0.06 9.84 16 15 O -0.53 -12.49 13.66 5.56 0.08 -12.41 16 16 C 0.07 1.09 2.83 -68.88 -0.19 0.90 16 17 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 18 C -0.10 -1.37 4.64 -26.65 -0.12 -1.49 16 19 C -0.09 -0.92 2.25 -90.50 -0.20 -1.13 16 20 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 21 C -0.12 -1.14 5.41 -26.73 -0.14 -1.28 16 22 C -0.15 -1.22 9.67 37.16 0.36 -0.86 16 23 C -0.11 -1.16 5.08 -26.65 -0.14 -1.29 16 24 C 0.06 0.66 6.55 -3.83 -0.03 0.63 16 25 N -0.67 -9.54 6.09 -107.99 -0.66 -10.20 16 26 H 0.05 1.23 7.85 -51.93 -0.41 0.82 16 27 H 0.04 0.80 5.65 -51.93 -0.29 0.51 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.39 6.97 8.54 -40.82 -0.35 6.62 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.42 6.64 -51.93 -0.34 0.08 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.55 6.71 -51.93 -0.35 0.21 16 42 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.35 5.02 8.74 -39.29 -0.34 4.68 16 LS Contribution 338.69 15.07 5.10 5.10 Total: -1.00 -29.46 338.69 -8.88 -38.34 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -7.83 Total: 9.29 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -0.91 Total: -6.66 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.31 Total: -49.23 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.08 Total: -12.41 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.46 -8.88 -38.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131190029.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.589 kcal (2) G-P(sol) polarization free energy of solvation -29.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds