Wall clock time and date at job start Mon Mar 30 2020 05:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47141 * 2 1 4 4 H 1.09002 * 109.47029 * 55.00750 * 3 2 1 5 5 C 1.50701 * 109.47088 * 175.00288 * 3 2 1 6 6 H 1.08004 * 119.99844 * 120.00377 * 5 3 2 7 7 C 1.37874 * 120.00094 * 300.00476 * 5 3 2 8 8 N 1.31518 * 120.00100 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00274 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46960 * 59.99533 * 9 7 5 11 11 H 1.48493 * 109.47678 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46940 * 300.00051 * 9 7 5 13 13 N 1.46496 * 109.47465 * 295.00453 * 3 2 1 14 14 C 1.34779 * 119.99778 * 84.99450 * 13 3 2 15 15 O 1.21278 * 119.99926 * 0.02562 * 14 13 3 16 16 C 1.50704 * 119.99546 * 179.97438 * 14 13 3 17 17 H 1.08999 * 109.46370 * 40.02558 * 16 14 13 18 18 C 1.53032 * 109.46293 * 280.05616 * 16 14 13 19 19 C 1.53124 * 109.28012 * 180.80757 * 18 16 14 20 20 H 1.08999 * 109.52008 * 297.75553 * 19 18 16 21 21 C 1.52995 * 109.52544 * 177.62063 * 19 18 16 22 22 C 1.52998 * 109.47093 * 174.99766 * 21 19 18 23 23 C 1.53119 * 109.15841 * 57.65244 * 19 18 16 24 24 C 1.53040 * 109.28089 * 302.34776 * 23 19 18 25 25 N 1.46846 * 109.45995 * 160.00522 * 16 14 13 26 26 H 1.09004 * 109.46699 * 299.99175 * 1 2 3 27 27 H 1.09000 * 109.47418 * 59.99463 * 1 2 3 28 28 H 1.09003 * 109.47403 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46699 * 240.00825 * 2 1 3 30 30 H 1.09000 * 109.47418 * 120.00536 * 2 1 3 31 31 H 0.96998 * 119.99824 * 180.02562 * 8 7 5 32 32 H 0.97006 * 120.00112 * 265.00029 * 13 3 2 33 33 H 1.08999 * 109.50710 * 300.74605 * 18 16 14 34 34 H 1.08994 * 109.50574 * 60.82555 * 18 16 14 35 35 H 1.08999 * 109.47534 * 295.00064 * 21 19 18 36 36 H 1.09002 * 109.47076 * 55.00143 * 21 19 18 37 37 H 1.09002 * 109.46851 * 60.00240 * 22 21 19 38 38 H 1.09001 * 109.47232 * 179.97438 * 22 21 19 39 39 H 1.09004 * 109.47622 * 300.00381 * 22 21 19 40 40 H 1.09004 * 109.50189 * 62.29271 * 23 19 18 41 41 H 1.09001 * 109.50740 * 182.36562 * 23 19 18 42 42 H 1.08996 * 109.46572 * 299.16374 * 24 23 19 43 43 H 1.09004 * 109.46207 * 179.19455 * 24 23 19 44 44 H 1.00904 * 111.00089 * 305.85757 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8783 1.2278 8 7 3.4063 0.3373 2.1732 9 14 6.0050 0.8811 1.3816 10 1 6.4995 2.2814 1.3820 11 1 6.3979 0.2176 2.6505 12 1 6.5975 0.1473 0.2345 13 7 1.6524 2.0976 -1.2517 14 6 0.4350 2.6644 -1.3667 15 8 -0.3393 2.6326 -0.4338 16 6 0.0365 3.3388 -2.6542 17 1 0.3961 2.7508 -3.4986 18 6 0.6528 4.7385 -2.7086 19 6 0.2289 5.4274 -4.0088 20 1 0.6102 4.8641 -4.8605 21 6 0.7932 6.8490 -4.0418 22 6 0.4753 7.4927 -5.3929 23 6 -1.3000 5.4807 -4.0739 24 6 -1.8597 4.0594 -3.9799 25 7 -1.4267 3.4440 -2.7189 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8932 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.8294 -0.0606 2.9500 32 1 2.2718 2.1233 -1.9978 33 1 0.3045 5.3229 -1.8570 34 1 1.7393 4.6593 -2.6756 35 1 0.3416 7.4379 -3.2435 36 1 1.8736 6.8144 -3.9011 37 1 -0.6050 7.5273 -5.5336 38 1 0.8770 8.5058 -5.4163 39 1 0.9270 6.9039 -6.1913 40 1 -1.6790 6.0768 -3.2437 41 1 -1.6086 5.9323 -5.0167 42 1 -1.4913 3.4678 -4.8180 43 1 -2.9487 4.0951 -4.0116 44 1 -1.8602 2.5421 -2.5891 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131190029.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:16 Heat of formation + Delta-G solvation = -83.761877 kcal Electronic energy + Delta-G solvation = -21555.919714 eV Core-core repulsion = 18505.991031 eV Total energy + Delta-G solvation = -3049.928684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.11976 -39.26959 -36.88761 -35.34796 -34.29637 -33.06893 -31.71627 -30.73531 -28.94198 -26.04984 -24.91207 -24.20526 -22.85148 -21.59466 -20.91946 -20.62660 -18.93666 -17.69023 -17.36584 -16.90832 -16.27740 -15.88077 -15.62851 -15.39235 -15.06358 -14.66521 -14.58288 -14.52902 -13.95676 -13.71490 -13.63918 -13.34729 -13.15195 -12.90300 -12.68356 -12.62521 -12.56870 -12.27647 -12.18641 -12.06290 -11.96867 -11.58229 -11.51066 -11.46822 -11.06510 -11.04444 -10.55600 -10.33293 -9.58898 -9.35487 -8.15046 -6.32609 1.44851 1.46680 1.54423 1.88075 2.34353 2.57024 3.13999 3.29939 3.77495 3.80966 3.88268 4.14499 4.22596 4.28316 4.42620 4.48960 4.54902 4.57308 4.61987 4.69376 4.73776 4.77674 4.86194 4.95521 5.06260 5.12568 5.14189 5.17422 5.25700 5.26636 5.31837 5.44623 5.49590 5.56747 5.58665 5.64793 5.79979 5.91431 6.08228 6.18267 6.38127 6.75654 7.05600 7.35016 7.64337 8.90046 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022252 B = 0.004802 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.012415 B = 5829.299562 C = 6855.966556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.120 4.120 3 C 0.280 3.720 4 H -0.005 1.005 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.264 1.264 13 N -0.706 5.706 14 C 0.498 3.502 15 O -0.573 6.573 16 C 0.086 3.914 17 H 0.073 0.927 18 C -0.099 4.099 19 C -0.079 4.079 20 H 0.081 0.919 21 C -0.119 4.119 22 C -0.148 4.148 23 C -0.111 4.111 24 C 0.059 3.941 25 N -0.685 5.685 26 H 0.023 0.977 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.264 0.736 32 H 0.401 0.599 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.091 0.909 42 H 0.042 0.958 43 H 0.087 0.913 44 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.449 8.904 -17.263 20.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.013 0.987 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.356 5.356 14 C 0.285 3.715 15 O -0.453 6.453 16 C -0.027 4.027 17 H 0.091 0.909 18 C -0.137 4.137 19 C -0.098 4.098 20 H 0.099 0.901 21 C -0.156 4.156 22 C -0.206 4.206 23 C -0.148 4.148 24 C -0.069 4.069 25 N -0.319 5.319 26 H 0.042 0.958 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.235 0.765 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.060 0.940 43 H 0.106 0.894 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.003 9.371 -16.065 19.543 hybrid contribution 1.264 -0.971 0.011 1.594 sum -4.739 8.401 -16.054 18.728 Atomic orbital electron populations 1.21660 0.96942 0.99066 1.00202 1.21779 0.93772 0.99186 1.01209 1.18326 0.93558 0.89098 0.81424 0.98742 1.21556 0.91474 1.38929 1.06711 0.91106 1.25765 1.03265 0.94381 0.95009 1.70048 1.37122 1.38365 1.09830 0.85443 0.79175 0.78423 0.77559 1.19715 1.21230 1.18869 1.46275 1.15648 1.56137 1.17494 1.21072 0.81857 0.78314 0.90300 1.90655 1.52428 1.60209 1.41988 1.21349 0.90444 0.97531 0.93416 0.90899 1.21580 0.99870 0.92999 0.99294 1.21194 0.96074 0.96452 0.96069 0.90101 1.21531 1.00671 0.94816 0.98597 1.21781 1.02101 1.00457 0.96227 1.21712 0.94506 0.96041 1.02582 1.22057 1.00713 0.95481 0.88667 1.59962 1.04954 1.29829 1.37127 0.95758 0.93714 0.93584 0.94093 0.91098 0.92637 0.76477 0.93138 0.90897 0.92705 0.92107 0.91944 0.92488 0.92242 0.92557 0.89069 0.94000 0.89445 0.83644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.51 71.98 0.61 -4.90 16 2 C -0.12 -5.99 5.45 30.59 0.17 -5.82 16 3 C 0.28 14.46 2.24 44.25 0.10 14.55 16 4 H -0.01 -0.33 7.58 -2.39 -0.02 -0.35 16 5 C -0.55 -29.12 8.73 25.60 0.22 -28.89 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.86 5.29 84.65 0.45 1.31 16 8 N -0.92 -52.75 11.29 21.45 0.24 -52.51 16 9 Si 0.97 42.13 29.54 68.60 2.03 44.16 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 13 N -0.71 -29.20 5.02 -446.09 -2.24 -31.44 16 14 C 0.50 19.84 5.56 87.66 0.49 20.32 16 15 O -0.57 -27.90 13.66 -3.02 -0.04 -27.95 16 16 C 0.09 2.48 2.83 44.19 0.13 2.60 16 17 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 18 C -0.10 -2.59 4.64 30.65 0.14 -2.44 16 19 C -0.08 -1.50 2.25 -10.71 -0.02 -1.52 16 20 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 21 C -0.12 -2.03 5.41 30.59 0.17 -1.87 16 22 C -0.15 -1.94 9.67 71.98 0.70 -1.25 16 23 C -0.11 -1.98 5.08 30.65 0.16 -1.83 16 24 C 0.06 1.14 6.55 86.33 0.57 1.71 16 25 N -0.69 -18.83 6.09 -495.56 -3.02 -21.85 16 26 H 0.02 1.19 7.85 -2.39 -0.02 1.17 16 27 H 0.04 1.93 5.65 -2.39 -0.01 1.92 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 3.95 5.95 -2.39 -0.01 3.93 16 31 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 32 H 0.40 14.10 8.54 -92.70 -0.79 13.31 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 0.74 6.64 -2.39 -0.02 0.72 16 38 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.09 1.20 6.71 -2.39 -0.02 1.18 16 42 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.34 9.66 8.74 -89.69 -0.78 8.88 16 Total: -1.00 -65.67 338.69 0.23 -65.43 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: -0.60 Total: 32.19 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 3.86 Total: -8.03 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -5.02 Total: -105.81 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.04 Total: -27.95 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -65.67 0.23 -65.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131190029.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.328 kcal (2) G-P(sol) polarization free energy of solvation -65.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds