Wall clock time and date at job start Mon Mar 30 2020 05:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47353 * 2 1 4 4 H 1.09002 * 109.52035 * 55.12932 * 3 2 1 5 5 C 1.53117 * 109.52389 * 295.00158 * 3 2 1 6 6 C 1.53033 * 109.28196 * 182.37297 * 5 3 2 7 7 N 1.46850 * 109.52021 * 59.17821 * 6 5 3 8 8 C 1.46845 * 111.19974 * 298.25827 * 7 6 5 9 9 H 1.09002 * 109.46296 * 301.72630 * 8 7 6 10 10 C 1.50700 * 109.46474 * 181.74603 * 8 7 6 11 11 O 1.21285 * 119.99729 * 339.98336 * 10 8 7 12 12 N 1.34776 * 120.00364 * 159.97760 * 10 8 7 13 13 C 1.46500 * 119.99742 * 0.02562 * 12 10 8 14 14 C 1.46490 * 120.00115 * 180.02562 * 12 10 8 15 15 H 1.09001 * 109.47249 * 0.02562 * 14 12 10 16 16 C 1.53000 * 109.47449 * 120.00360 * 14 12 10 17 17 C 1.50700 * 109.47280 * 240.00397 * 14 12 10 18 18 H 1.07997 * 120.00125 * 359.97438 * 17 14 12 19 19 C 1.37874 * 120.00112 * 180.02562 * 17 14 12 20 20 N 1.31519 * 120.00106 * 180.02562 * 19 17 14 21 21 Si 1.86804 * 120.00116 * 359.97438 * 19 17 14 22 22 H 1.48494 * 109.46949 * 90.00308 * 21 19 17 23 23 H 1.48499 * 109.47112 * 209.99901 * 21 19 17 24 24 H 1.48500 * 109.46901 * 330.00252 * 21 19 17 25 25 C 1.53035 * 109.52163 * 61.74237 * 8 7 6 26 26 H 1.08995 * 109.47354 * 299.99666 * 1 2 3 27 27 H 1.08998 * 109.47278 * 59.99842 * 1 2 3 28 28 H 1.09007 * 109.46997 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46929 * 240.00022 * 2 1 3 30 30 H 1.08998 * 109.46828 * 120.00446 * 2 1 3 31 31 H 1.09008 * 109.50509 * 62.43306 * 5 3 2 32 32 H 1.08999 * 109.53899 * 302.33652 * 5 3 2 33 33 H 1.09007 * 109.46547 * 299.16541 * 6 5 3 34 34 H 1.09000 * 109.46103 * 179.19001 * 6 5 3 35 35 H 1.00895 * 110.99936 * 62.35825 * 7 6 5 36 36 H 1.08996 * 109.47386 * 89.99688 * 13 12 10 37 37 H 1.09000 * 109.47331 * 209.99764 * 13 12 10 38 38 H 1.08999 * 109.47197 * 329.99458 * 13 12 10 39 39 H 1.09011 * 109.47004 * 300.00313 * 16 14 12 40 40 H 1.09004 * 109.47121 * 59.99162 * 16 14 12 41 41 H 1.08995 * 109.47767 * 180.02562 * 16 14 12 42 42 H 0.97000 * 119.99976 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.50627 * 60.75837 * 25 8 7 44 44 H 1.09001 * 109.50255 * 180.87798 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6077 1.9816 0.8429 5 6 1.6356 2.1282 -1.3079 6 6 2.1989 3.5509 -1.3277 7 7 3.6620 3.5011 -1.2123 8 6 4.0740 2.8894 0.0575 9 1 3.6540 3.4576 0.8875 10 6 5.5779 2.8969 0.1539 11 8 6.2492 3.0155 -0.8492 12 7 6.1769 2.7719 1.3547 13 6 5.3659 2.6283 2.5663 14 6 7.6388 2.7798 1.4485 15 1 8.0661 2.8954 0.4524 16 6 8.0869 3.9447 2.3335 17 6 8.1106 1.4813 2.0503 18 1 7.3932 0.7259 2.3350 19 6 9.4581 1.2581 2.2385 20 7 9.8699 0.1246 2.7633 21 14 10.6990 2.5650 1.7469 22 1 10.9423 3.4737 2.8958 23 1 11.9738 1.9136 1.3524 24 1 10.1672 3.3465 0.6016 25 6 3.5666 1.4469 0.1186 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.5484 2.1663 -1.3779 32 1 2.0351 1.5669 -2.1525 33 1 1.7877 4.1161 -0.4912 34 1 1.9248 4.0370 -2.2640 35 1 4.0702 3.0155 -1.9969 36 1 5.1775 1.5713 2.7542 37 1 5.8995 3.0584 3.4139 38 1 4.4174 3.1483 2.4325 39 1 7.7456 4.8840 1.8981 40 1 7.6594 3.8296 3.3296 41 1 9.1746 3.9509 2.4028 42 1 10.8179 -0.0325 2.8954 43 1 3.9970 0.8745 -0.7032 44 1 3.8592 0.9981 1.0678 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131248290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:05 Heat of formation + Delta-G solvation = -43.200472 kcal Electronic energy + Delta-G solvation = -21848.185461 eV Core-core repulsion = 18800.015652 eV Total energy + Delta-G solvation = -3048.169809 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.05484 -38.16699 -35.53984 -34.38983 -32.86109 -31.38456 -29.92746 -29.68792 -26.26828 -25.22304 -24.86033 -23.29491 -22.28465 -20.60117 -20.23449 -18.30843 -17.07843 -16.24591 -16.03499 -15.24480 -15.11536 -14.77679 -14.49942 -14.21126 -13.84213 -13.57793 -13.49898 -12.90685 -12.86858 -12.43797 -12.27856 -12.21367 -12.13079 -11.85838 -11.69292 -11.52136 -11.26799 -11.15270 -11.02062 -10.95834 -10.70265 -10.66834 -10.39219 -10.11299 -9.63054 -9.31718 -8.95462 -8.62506 -8.24544 -7.69176 -6.13779 -4.14161 3.24549 3.28481 3.38213 3.41687 3.68721 4.36534 4.42431 4.57377 4.61571 4.79213 5.03319 5.08262 5.13297 5.21697 5.23166 5.28870 5.33329 5.41632 5.57760 5.68852 5.71777 5.76269 5.84568 5.86900 5.93500 5.97152 6.00761 6.06609 6.16072 6.23744 6.28275 6.32415 6.36781 6.50744 6.86830 6.96067 7.18894 7.38047 7.46525 7.65025 8.21599 8.49415 8.86210 8.95695 9.47747 10.98964 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027850 B = 0.004952 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.154058 B = 5652.813998 C = 6145.181842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.084 4.084 4 H 0.071 0.929 5 C -0.155 4.155 6 C 0.059 3.941 7 N -0.669 5.669 8 C 0.073 3.927 9 H 0.098 0.902 10 C 0.514 3.486 11 O -0.546 6.546 12 N -0.586 5.586 13 C 0.086 3.914 14 C 0.230 3.770 15 H 0.062 0.938 16 C -0.161 4.161 17 C -0.526 4.526 18 H 0.078 0.922 19 C 0.075 3.925 20 N -0.896 5.896 21 Si 0.883 3.117 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.263 1.263 25 C -0.142 4.142 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.352 0.648 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.034 0.966 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.265 0.735 43 H 0.069 0.931 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.268 4.014 -3.357 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.102 4.102 4 H 0.090 0.910 5 C -0.194 4.194 6 C -0.071 4.071 7 N -0.300 5.300 8 C -0.041 4.041 9 H 0.116 0.884 10 C 0.301 3.699 11 O -0.424 6.424 12 N -0.317 5.317 13 C -0.058 4.058 14 C 0.128 3.872 15 H 0.080 0.920 16 C -0.219 4.219 17 C -0.564 4.564 18 H 0.096 0.904 19 C -0.127 4.127 20 N -0.534 5.534 21 Si 0.713 3.287 22 H -0.204 1.204 23 H -0.222 1.222 24 H -0.188 1.188 25 C -0.182 4.182 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.171 0.829 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.666 4.626 -3.586 18.610 hybrid contribution 0.559 -0.477 -0.102 0.742 sum -17.107 4.149 -3.689 17.985 Atomic orbital electron populations 1.21802 0.95966 1.01406 1.01717 1.21564 0.95688 0.96218 1.02288 1.21189 0.94903 0.96186 0.97943 0.91026 1.22404 1.01311 0.97919 0.97789 1.22039 0.87553 0.95144 1.02328 1.60397 1.07879 1.57814 1.03881 1.21531 0.93471 0.94619 0.94448 0.88378 1.20207 0.89175 0.76925 0.83641 1.90626 1.65833 1.50447 1.35478 1.47814 1.08253 1.70119 1.05537 1.21645 0.94273 1.01227 0.88667 1.19274 0.75682 0.94641 0.97646 0.92002 1.22457 1.00349 0.98154 1.00965 1.21156 0.93168 1.00309 1.41768 0.90425 1.24864 0.98146 0.95444 0.94288 1.69877 1.15580 1.23965 1.43956 0.86917 0.80693 0.81587 0.79512 1.20412 1.22177 1.18769 1.22229 0.95350 0.96731 1.03879 0.92824 0.92661 0.92964 0.92048 0.91732 0.91342 0.91914 0.91084 0.90600 0.82858 0.92817 0.90812 0.92676 0.94741 0.92568 0.93186 0.92474 0.91274 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.67 37.16 0.36 -0.84 16 2 C -0.12 -1.14 5.41 -26.73 -0.14 -1.28 16 3 C -0.08 -0.85 2.25 -90.50 -0.20 -1.05 16 4 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 5 C -0.16 -1.45 5.06 -26.65 -0.13 -1.58 16 6 C 0.06 0.61 6.55 -3.83 -0.03 0.59 16 7 N -0.67 -9.39 6.28 -107.99 -0.68 -10.07 16 8 C 0.07 1.08 2.09 -68.88 -0.14 0.93 16 9 H 0.10 1.31 6.31 -51.93 -0.33 0.99 16 10 C 0.51 10.34 6.93 -10.99 -0.08 10.27 16 11 O -0.55 -13.10 15.52 5.55 0.09 -13.01 16 12 N -0.59 -12.07 2.75 -175.27 -0.48 -12.55 16 13 C 0.09 1.39 8.80 59.85 0.53 1.92 16 14 C 0.23 5.60 2.23 -69.09 -0.15 5.44 16 15 H 0.06 1.69 5.96 -51.93 -0.31 1.38 16 16 C -0.16 -3.52 8.65 37.16 0.32 -3.20 16 17 C -0.53 -14.57 8.95 -34.44 -0.31 -14.88 16 18 H 0.08 2.31 7.89 -52.49 -0.41 1.89 16 19 C 0.08 2.15 5.45 -17.82 -0.10 2.06 16 20 N -0.90 -27.05 13.96 55.43 0.77 -26.27 16 21 Si 0.88 22.05 24.37 -169.99 -4.14 17.90 16 22 H -0.28 -6.61 6.87 56.52 0.39 -6.22 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.26 -6.53 6.53 56.52 0.37 -6.16 16 25 C -0.14 -1.87 4.56 -26.65 -0.12 -1.99 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.41 6.62 -51.93 -0.34 0.07 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.54 6.69 -51.92 -0.35 0.20 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.35 5.26 8.31 -39.29 -0.33 4.93 16 36 H 0.05 0.87 7.66 -51.93 -0.40 0.47 16 37 H 0.07 1.19 6.43 -51.93 -0.33 0.86 16 38 H 0.05 0.70 5.94 -51.93 -0.31 0.39 16 39 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 40 H 0.06 1.13 6.66 -51.93 -0.35 0.78 16 41 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 42 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.08 1.06 6.94 -51.93 -0.36 0.70 16 LS Contribution 328.41 15.07 4.95 4.95 Total: -1.00 -31.89 328.41 -7.09 -38.98 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -7.39 Total: 3.71 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -0.20 Total: -3.63 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -0.39 Total: -48.90 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.09 Total: -13.01 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.14 Total: 17.90 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.89 -7.09 -38.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131248290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.223 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds