Wall clock time and date at job start Mon Mar 30 2020 05:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47353 * 2 1 4 4 H 1.09002 * 109.52035 * 55.12932 * 3 2 1 5 5 C 1.53117 * 109.52389 * 295.00158 * 3 2 1 6 6 C 1.53033 * 109.28196 * 182.37297 * 5 3 2 7 7 N 1.46850 * 109.52021 * 59.17821 * 6 5 3 8 8 C 1.46845 * 111.19974 * 298.25827 * 7 6 5 9 9 H 1.09002 * 109.46296 * 301.72630 * 8 7 6 10 10 C 1.50700 * 109.46474 * 181.74603 * 8 7 6 11 11 O 1.21285 * 119.99729 * 339.98336 * 10 8 7 12 12 N 1.34776 * 120.00364 * 159.97760 * 10 8 7 13 13 C 1.46500 * 119.99742 * 0.02562 * 12 10 8 14 14 C 1.46490 * 120.00115 * 180.02562 * 12 10 8 15 15 H 1.09001 * 109.47249 * 0.02562 * 14 12 10 16 16 C 1.53000 * 109.47449 * 120.00360 * 14 12 10 17 17 C 1.50700 * 109.47280 * 240.00397 * 14 12 10 18 18 H 1.07997 * 120.00125 * 359.97438 * 17 14 12 19 19 C 1.37874 * 120.00112 * 180.02562 * 17 14 12 20 20 N 1.31519 * 120.00106 * 180.02562 * 19 17 14 21 21 Si 1.86804 * 120.00116 * 359.97438 * 19 17 14 22 22 H 1.48494 * 109.46949 * 90.00308 * 21 19 17 23 23 H 1.48499 * 109.47112 * 209.99901 * 21 19 17 24 24 H 1.48500 * 109.46901 * 330.00252 * 21 19 17 25 25 C 1.53035 * 109.52163 * 61.74237 * 8 7 6 26 26 H 1.08995 * 109.47354 * 299.99666 * 1 2 3 27 27 H 1.08998 * 109.47278 * 59.99842 * 1 2 3 28 28 H 1.09007 * 109.46997 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46929 * 240.00022 * 2 1 3 30 30 H 1.08998 * 109.46828 * 120.00446 * 2 1 3 31 31 H 1.09008 * 109.50509 * 62.43306 * 5 3 2 32 32 H 1.08999 * 109.53899 * 302.33652 * 5 3 2 33 33 H 1.09007 * 109.46547 * 299.16541 * 6 5 3 34 34 H 1.09000 * 109.46103 * 179.19001 * 6 5 3 35 35 H 1.00895 * 110.99936 * 62.35825 * 7 6 5 36 36 H 1.08996 * 109.47386 * 89.99688 * 13 12 10 37 37 H 1.09000 * 109.47331 * 209.99764 * 13 12 10 38 38 H 1.08999 * 109.47197 * 329.99458 * 13 12 10 39 39 H 1.09011 * 109.47004 * 300.00313 * 16 14 12 40 40 H 1.09004 * 109.47121 * 59.99162 * 16 14 12 41 41 H 1.08995 * 109.47767 * 180.02562 * 16 14 12 42 42 H 0.97000 * 119.99976 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.50627 * 60.75837 * 25 8 7 44 44 H 1.09001 * 109.50255 * 180.87798 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6077 1.9816 0.8429 5 6 1.6356 2.1282 -1.3079 6 6 2.1989 3.5509 -1.3277 7 7 3.6620 3.5011 -1.2123 8 6 4.0740 2.8894 0.0575 9 1 3.6540 3.4576 0.8875 10 6 5.5779 2.8969 0.1539 11 8 6.2492 3.0155 -0.8492 12 7 6.1769 2.7719 1.3547 13 6 5.3659 2.6283 2.5663 14 6 7.6388 2.7798 1.4485 15 1 8.0661 2.8954 0.4524 16 6 8.0869 3.9447 2.3335 17 6 8.1106 1.4813 2.0503 18 1 7.3932 0.7259 2.3350 19 6 9.4581 1.2581 2.2385 20 7 9.8699 0.1246 2.7633 21 14 10.6990 2.5650 1.7469 22 1 10.9423 3.4737 2.8958 23 1 11.9738 1.9136 1.3524 24 1 10.1672 3.3465 0.6016 25 6 3.5666 1.4469 0.1186 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.5484 2.1663 -1.3779 32 1 2.0351 1.5669 -2.1525 33 1 1.7877 4.1161 -0.4912 34 1 1.9248 4.0370 -2.2640 35 1 4.0702 3.0155 -1.9969 36 1 5.1775 1.5713 2.7542 37 1 5.8995 3.0584 3.4139 38 1 4.4174 3.1483 2.4325 39 1 7.7456 4.8840 1.8981 40 1 7.6594 3.8296 3.3296 41 1 9.1746 3.9509 2.4028 42 1 10.8179 -0.0325 2.8954 43 1 3.9970 0.8745 -0.7032 44 1 3.8592 0.9981 1.0678 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131248290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:05 Heat of formation + Delta-G solvation = -65.990850 kcal Electronic energy + Delta-G solvation = -21849.173726 eV Core-core repulsion = 18800.015652 eV Total energy + Delta-G solvation = -3049.158074 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.38662 -39.41428 -37.25569 -35.33208 -34.81135 -32.91185 -31.38323 -30.51447 -27.72968 -27.16223 -26.05258 -24.31295 -23.36803 -22.06357 -21.11939 -19.85244 -18.95747 -17.94476 -17.55242 -16.76832 -16.32364 -15.83150 -15.67531 -15.47764 -15.04654 -14.95871 -14.57832 -14.45028 -14.23539 -14.10671 -13.76484 -13.49338 -13.29348 -13.14169 -13.04271 -12.77508 -12.67134 -12.46219 -12.28342 -12.06354 -11.92963 -11.79171 -11.58964 -11.52962 -11.36161 -11.21217 -10.80792 -10.50577 -9.42203 -9.27492 -8.36179 -6.40416 1.24905 1.34697 1.43568 1.73844 2.20252 2.26785 2.99197 3.32927 3.52702 3.73657 3.86148 3.99177 4.12649 4.14893 4.37024 4.41787 4.44789 4.50614 4.54809 4.60076 4.61797 4.63322 4.71632 4.77875 4.85436 4.94161 4.97331 5.02592 5.06528 5.12095 5.13765 5.22601 5.24894 5.31260 5.45401 5.48302 5.52661 5.71315 6.00612 6.21640 6.35147 6.61169 6.74877 7.21250 7.38636 8.79838 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027850 B = 0.004952 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.154058 B = 5652.813998 C = 6145.181842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C -0.076 4.076 4 H 0.088 0.912 5 C -0.149 4.149 6 C 0.060 3.940 7 N -0.683 5.683 8 C 0.088 3.912 9 H 0.123 0.877 10 C 0.503 3.497 11 O -0.594 6.594 12 N -0.594 5.594 13 C 0.082 3.918 14 C 0.231 3.769 15 H 0.028 0.972 16 C -0.154 4.154 17 C -0.524 4.524 18 H 0.045 0.955 19 C 0.024 3.976 20 N -0.939 5.939 21 Si 0.940 3.060 22 H -0.252 1.252 23 H -0.295 1.295 24 H -0.265 1.265 25 C -0.137 4.137 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.342 0.658 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.041 0.959 42 H 0.268 0.732 43 H 0.044 0.956 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.574 5.865 -2.877 21.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.094 4.094 4 H 0.107 0.893 5 C -0.188 4.188 6 C -0.069 4.069 7 N -0.314 5.314 8 C -0.025 4.025 9 H 0.140 0.860 10 C 0.292 3.708 11 O -0.475 6.475 12 N -0.324 5.324 13 C -0.060 4.060 14 C 0.127 3.873 15 H 0.046 0.954 16 C -0.211 4.211 17 C -0.562 4.562 18 H 0.063 0.937 19 C -0.175 4.175 20 N -0.579 5.579 21 Si 0.768 3.232 22 H -0.177 1.177 23 H -0.223 1.223 24 H -0.190 1.190 25 C -0.177 4.177 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.160 0.840 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.022 6.489 -3.074 21.270 hybrid contribution 1.214 -1.133 -0.286 1.685 sum -18.808 5.356 -3.361 19.842 Atomic orbital electron populations 1.21769 0.94261 1.01935 1.02490 1.21550 0.97114 0.95619 1.01512 1.21163 0.92150 0.96953 0.99140 0.89333 1.22350 1.02637 0.96946 0.96819 1.22171 0.85048 0.95993 1.03690 1.60443 1.10360 1.57578 1.02993 1.21438 0.89232 0.95958 0.95883 0.85952 1.21254 0.91518 0.75452 0.82615 1.90592 1.67439 1.52456 1.36998 1.47895 1.07150 1.69995 1.07365 1.21880 0.95520 1.01666 0.86942 1.18945 0.78379 0.94039 0.95927 0.95423 1.22311 0.99832 0.97671 1.01325 1.21346 0.92726 1.01164 1.41005 0.93696 1.25627 1.00136 0.97375 0.94366 1.70000 1.16169 1.25977 1.45728 0.85987 0.78011 0.79394 0.79839 1.17749 1.22296 1.18977 1.22189 0.97803 0.95224 1.02465 0.92006 0.91840 0.92688 0.93065 0.92447 0.88930 0.92895 0.89650 0.89283 0.83956 0.93330 0.90555 0.88375 0.92652 0.90857 0.94007 0.92266 0.93752 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.67 71.98 0.70 -1.22 16 2 C -0.12 -2.08 5.41 30.59 0.17 -1.91 16 3 C -0.08 -1.34 2.25 -10.72 -0.02 -1.37 16 4 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 5 C -0.15 -2.35 5.06 30.64 0.15 -2.19 16 6 C 0.06 1.05 6.55 86.32 0.57 1.62 16 7 N -0.68 -18.22 6.28 -495.56 -3.11 -21.33 16 8 C 0.09 2.48 2.09 44.19 0.09 2.57 16 9 H 0.12 2.84 6.31 -2.39 -0.02 2.82 16 10 C 0.50 20.27 6.93 87.66 0.61 20.88 16 11 O -0.59 -29.32 15.52 -3.04 -0.05 -29.37 16 12 N -0.59 -24.31 2.75 -826.82 -2.28 -26.59 16 13 C 0.08 2.53 8.80 127.77 1.12 3.66 16 14 C 0.23 11.33 2.23 44.25 0.10 11.43 16 15 H 0.03 1.56 5.96 -2.39 -0.01 1.54 16 16 C -0.15 -6.45 8.65 71.98 0.62 -5.83 16 17 C -0.52 -29.78 8.95 25.60 0.23 -29.55 16 18 H 0.04 2.78 7.89 -2.91 -0.02 2.75 16 19 C 0.02 1.38 5.45 84.65 0.46 1.84 16 20 N -0.94 -58.04 13.96 21.45 0.30 -57.74 16 21 Si 0.94 45.77 24.37 68.60 1.67 47.44 16 22 H -0.25 -11.20 6.87 99.48 0.68 -10.52 16 23 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 24 H -0.26 -12.88 6.53 99.48 0.65 -12.23 16 25 C -0.14 -3.50 4.56 30.65 0.14 -3.36 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.73 6.62 -2.39 -0.02 0.71 16 28 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.09 1.08 6.69 -2.38 -0.02 1.07 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.34 10.22 8.31 -89.70 -0.75 9.47 16 36 H 0.05 1.55 7.66 -2.39 -0.02 1.53 16 37 H 0.08 2.32 6.43 -2.39 -0.02 2.30 16 38 H 0.10 2.15 5.94 -2.39 -0.01 2.14 16 39 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 40 H 0.07 2.79 6.66 -2.38 -0.02 2.78 16 41 H 0.04 1.81 3.27 -2.39 -0.01 1.81 16 42 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 43 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.07 1.89 6.94 -2.39 -0.02 1.87 16 Total: -1.00 -71.80 328.41 1.63 -70.17 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 0.16 Total: 20.86 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 4.93 Total: -3.44 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -5.09 Total: -105.66 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.05 Total: -29.37 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.67 Total: 47.44 kcal Total: -71.80 1.63 -70.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131248290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.182 kcal (2) G-P(sol) polarization free energy of solvation -71.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds