Wall clock time and date at job start Mon Mar 30 2020 05:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46830 * 2 1 4 4 H 1.09003 * 109.52549 * 54.87250 * 3 2 1 5 5 C 1.53119 * 109.52266 * 294.68178 * 3 2 1 6 6 C 1.53040 * 109.28020 * 182.43946 * 5 3 2 7 7 N 1.46849 * 109.52112 * 59.17675 * 6 5 3 8 8 C 1.46849 * 111.20086 * 298.26253 * 7 6 5 9 9 H 1.09005 * 109.45014 * 301.72724 * 8 7 6 10 10 C 1.50697 * 109.46525 * 181.75889 * 8 7 6 11 11 O 1.21289 * 119.99568 * 339.94252 * 10 8 7 12 12 N 1.34777 * 120.00369 * 159.94411 * 10 8 7 13 13 C 1.46497 * 119.99886 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.46729 * 179.97438 * 13 12 10 15 15 C 1.53005 * 109.47197 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.47088 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00496 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99572 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00327 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99951 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 59.99744 * 20 18 16 22 22 H 1.48503 * 109.47261 * 299.99924 * 20 18 16 23 23 H 1.48500 * 109.47454 * 179.97438 * 20 18 16 24 24 C 1.53032 * 109.52482 * 61.73954 * 8 7 6 25 25 H 1.09002 * 109.47289 * 60.00575 * 1 2 3 26 26 H 1.09004 * 109.46611 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47374 * 299.99589 * 1 2 3 28 28 H 1.08995 * 109.47175 * 239.99894 * 2 1 3 29 29 H 1.08994 * 109.47010 * 119.99574 * 2 1 3 30 30 H 1.09002 * 109.50372 * 302.37979 * 5 3 2 31 31 H 1.09001 * 109.50421 * 62.50300 * 5 3 2 32 32 H 1.08997 * 109.46376 * 179.19617 * 6 5 3 33 33 H 1.09000 * 109.46225 * 299.17896 * 6 5 3 34 34 H 1.00895 * 110.99955 * 174.16075 * 7 6 5 35 35 H 0.97003 * 119.99640 * 359.97438 * 12 10 8 36 36 H 1.09002 * 109.46915 * 60.00544 * 13 12 10 37 37 H 1.09001 * 109.47487 * 299.99836 * 13 12 10 38 38 H 1.09002 * 109.47097 * 60.00183 * 14 13 12 39 39 H 1.09001 * 109.47600 * 299.99943 * 14 13 12 40 40 H 1.09002 * 109.46935 * 60.00099 * 15 14 13 41 41 H 1.08998 * 109.47061 * 300.00893 * 15 14 13 42 42 H 0.97006 * 119.99995 * 359.97438 * 19 18 16 43 43 H 1.09000 * 109.50405 * 60.76442 * 24 8 7 44 44 H 1.09000 * 109.50576 * 180.84662 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6041 1.9830 0.8402 5 6 1.6423 2.1258 -1.3113 6 6 2.2070 3.5481 -1.3315 7 7 3.6695 3.4972 -1.2090 8 6 4.0750 2.8877 0.0640 9 1 3.6514 3.4582 0.8907 10 6 5.5783 2.8944 0.1677 11 8 6.2546 3.0098 -0.8325 12 7 6.1714 2.7722 1.3718 13 6 7.6329 2.7782 1.4724 14 6 8.0437 2.6264 2.9384 15 6 9.5701 2.6320 3.0436 16 6 9.9747 2.4819 4.4874 17 1 9.2189 2.3912 5.2534 18 6 11.3100 2.4605 4.8304 19 7 12.2304 2.5715 3.8977 20 14 11.8116 2.2737 6.6201 21 1 11.2842 0.9910 7.1508 22 1 11.2564 3.4019 7.4102 23 1 13.2931 2.2793 6.7222 24 6 3.5660 1.4458 0.1258 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 2.0460 1.5621 -2.1524 31 1 0.5556 2.1647 -1.3865 32 1 1.9378 4.0325 -2.2701 33 1 1.7926 4.1152 -0.4981 34 1 4.0734 4.4156 -1.3151 35 1 5.6305 2.6803 2.1717 36 1 8.0201 3.7196 1.0826 37 1 8.0404 1.9498 0.8929 38 1 7.6565 1.6852 3.3287 39 1 7.6363 3.4551 3.5176 40 1 9.9577 3.5730 2.6531 41 1 9.9772 1.8032 2.4644 42 1 11.9700 2.6681 2.9683 43 1 3.9999 0.8714 -0.6926 44 1 3.8542 0.9986 1.0772 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131342621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:54 Heat of formation + Delta-G solvation = -100.962639 kcal Electronic energy + Delta-G solvation = -20384.555188 eV Core-core repulsion = 17333.880624 eV Total energy + Delta-G solvation = -3050.674565 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.26271 -39.30843 -37.15981 -35.52287 -35.39228 -33.20967 -31.94216 -30.78676 -28.38158 -26.08131 -24.86952 -24.20177 -22.72485 -22.53034 -21.02119 -20.67635 -18.95106 -18.36483 -17.48422 -16.83484 -16.51739 -15.79005 -15.64597 -15.62285 -15.43257 -15.22627 -14.89536 -14.70561 -14.38525 -14.00064 -13.76408 -13.60020 -13.52511 -12.71861 -12.63590 -12.61211 -12.57986 -12.34663 -12.08695 -12.02820 -11.86762 -11.81429 -11.62016 -11.50980 -11.09718 -10.81748 -10.59042 -10.55417 -10.18659 -9.44241 -8.69854 -6.41200 1.53223 1.53456 1.62229 1.81179 2.02680 2.57926 3.15454 3.17357 3.57660 3.71229 3.84372 3.97511 4.03958 4.07654 4.16627 4.20222 4.38817 4.39684 4.50302 4.56878 4.65945 4.70456 4.75873 4.82074 4.83561 4.90626 4.94138 5.07523 5.10569 5.14346 5.23662 5.28771 5.30140 5.39170 5.45205 5.46759 5.55566 5.93097 5.96808 6.17175 6.28672 6.53642 6.55770 7.19676 7.42127 8.70974 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030732 B = 0.002911 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.889261 B = 9614.946930 C =10238.797388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.081 4.081 4 H 0.083 0.917 5 C -0.113 4.113 6 C 0.059 3.941 7 N -0.688 5.688 8 C 0.085 3.915 9 H 0.083 0.917 10 C 0.506 3.494 11 O -0.574 6.574 12 N -0.714 5.714 13 C 0.131 3.869 14 C -0.095 4.095 15 C 0.007 3.993 16 C -0.618 4.618 17 H 0.058 0.942 18 C -0.043 4.043 19 N -0.940 5.940 20 Si 1.120 2.880 21 H -0.266 1.266 22 H -0.266 1.266 23 H -0.287 1.287 24 C -0.101 4.101 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.347 0.653 35 H 0.415 0.585 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.068 0.932 39 H 0.068 0.932 40 H -0.012 1.012 41 H -0.012 1.012 42 H 0.254 0.746 43 H 0.053 0.947 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.950 -1.179 -5.877 28.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.099 4.099 4 H 0.101 0.899 5 C -0.150 4.150 6 C -0.069 4.069 7 N -0.322 5.322 8 C -0.028 4.028 9 H 0.101 0.899 10 C 0.293 3.707 11 O -0.452 6.452 12 N -0.367 5.367 13 C 0.006 3.994 14 C -0.132 4.132 15 C -0.030 4.030 16 C -0.656 4.656 17 H 0.077 0.923 18 C -0.240 4.240 19 N -0.578 5.578 20 Si 0.940 3.060 21 H -0.191 1.191 22 H -0.191 1.191 23 H -0.212 1.212 24 C -0.140 4.140 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.165 0.835 35 H 0.252 0.748 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.007 0.993 41 H 0.006 0.994 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -26.126 -1.771 -5.950 26.854 hybrid contribution -0.967 0.811 -0.561 1.381 sum -27.093 -0.959 -6.511 27.881 Atomic orbital electron populations 1.21794 0.94784 1.01924 1.02290 1.21534 0.96738 0.95439 1.01914 1.21201 0.93006 0.97057 0.98653 0.89913 1.21724 1.01075 0.94921 0.97317 1.22052 0.85323 0.97705 1.01815 1.59971 1.10829 1.28275 1.33117 1.21386 0.88981 0.99059 0.93375 0.89932 1.21246 0.91487 0.75359 0.82609 1.90693 1.66899 1.50227 1.37418 1.45981 1.07261 1.73940 1.09535 1.21199 0.80117 1.00497 0.97547 1.21473 0.96246 1.02127 0.93395 1.19121 0.93277 0.94311 0.96336 1.22485 0.94938 1.54340 0.93830 0.92325 1.27537 0.93573 0.92901 1.10005 1.70920 1.36597 1.48261 1.01989 0.82910 0.75801 0.78092 0.69149 1.19141 1.19126 1.21213 1.21628 0.97039 0.92742 1.02555 0.92092 0.92635 0.92248 0.92678 0.91835 0.92521 0.89340 0.89571 0.93771 0.83461 0.74829 0.93295 0.93457 0.91330 0.91301 0.99328 0.99359 0.93633 0.92775 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.67 71.98 0.70 -0.75 16 2 C -0.12 -1.46 5.41 30.60 0.17 -1.29 16 3 C -0.08 -1.05 2.25 -10.71 -0.02 -1.08 16 4 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 5 C -0.11 -1.47 5.08 30.65 0.16 -1.32 16 6 C 0.06 0.84 6.55 86.33 0.57 1.40 16 7 N -0.69 -14.30 6.09 -495.56 -3.02 -17.32 16 8 C 0.09 1.73 2.83 44.19 0.12 1.85 16 9 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 10 C 0.51 14.75 6.99 87.66 0.61 15.37 16 11 O -0.57 -22.42 16.52 -3.06 -0.05 -22.47 16 12 N -0.71 -19.56 5.56 -463.06 -2.57 -22.13 16 13 C 0.13 4.64 5.67 86.38 0.49 5.13 16 14 C -0.09 -3.66 5.27 30.60 0.16 -3.50 16 15 C 0.01 0.37 4.28 29.85 0.13 0.50 16 16 C -0.62 -34.98 9.11 25.60 0.23 -34.74 16 17 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 18 C -0.04 -2.51 5.46 84.66 0.46 -2.05 16 19 N -0.94 -59.36 13.65 21.45 0.29 -59.07 16 20 Si 1.12 49.80 29.90 68.60 2.05 51.85 16 21 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 24 C -0.10 -1.83 4.64 30.65 0.14 -1.68 16 25 H 0.06 0.53 6.64 -2.39 -0.02 0.52 16 26 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.09 0.82 6.71 -2.39 -0.02 0.81 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.35 7.34 8.74 -89.70 -0.78 6.56 16 35 H 0.41 8.47 8.47 -92.71 -0.79 7.69 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 40 H -0.01 -0.65 8.01 -2.39 -0.02 -0.67 16 41 H -0.01 -0.67 8.01 -2.39 -0.02 -0.68 16 42 H 0.25 16.33 7.22 -92.70 -0.67 15.66 16 43 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -72.61 349.93 0.11 -72.50 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -0.50 Total: 18.81 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: 3.91 Total: -22.16 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -5.30 Total: -98.52 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.05 Total: -22.47 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 2.05 Total: 51.85 kcal Total: -72.61 0.11 -72.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131342621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.467 kcal (2) G-P(sol) polarization free energy of solvation -72.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds