Wall clock time and date at job start Mon Mar 30 2020 05:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47010 * 2 1 4 4 H 1.08999 * 109.52700 * 304.87129 * 3 2 1 5 5 C 1.53123 * 109.52328 * 65.00346 * 3 2 1 6 6 C 1.53043 * 109.27841 * 177.62221 * 5 3 2 7 7 N 1.46842 * 109.52089 * 300.81792 * 6 5 3 8 8 C 1.46841 * 111.20126 * 61.74386 * 7 6 5 9 9 H 1.08999 * 109.46638 * 178.24009 * 8 7 6 10 10 C 1.50699 * 109.46306 * 58.26982 * 8 7 6 11 11 O 1.21284 * 120.00175 * 3.93232 * 10 8 7 12 12 N 1.34773 * 119.99969 * 183.92620 * 10 8 7 13 13 C 1.46504 * 120.00220 * 180.02562 * 12 10 8 14 14 C 1.52994 * 109.47550 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47411 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47288 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00198 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00015 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99897 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99823 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47381 * 60.00110 * 20 18 16 22 22 H 1.48504 * 109.47111 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47087 * 299.99778 * 20 18 16 24 24 C 1.53039 * 109.52447 * 298.25575 * 8 7 6 25 25 H 1.08998 * 109.47470 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47092 * 300.00607 * 1 2 3 27 27 H 1.09000 * 109.47267 * 59.99632 * 1 2 3 28 28 H 1.08995 * 109.47257 * 240.00066 * 2 1 3 29 29 H 1.08997 * 109.46981 * 119.99948 * 2 1 3 30 30 H 1.08992 * 109.50616 * 57.67947 * 5 3 2 31 31 H 1.09003 * 109.53100 * 297.58015 * 5 3 2 32 32 H 1.09001 * 109.45999 * 180.80006 * 6 5 3 33 33 H 1.09002 * 109.46514 * 60.83446 * 6 5 3 34 34 H 1.00905 * 111.00127 * 185.84063 * 7 6 5 35 35 H 0.97003 * 120.00404 * 0.02562 * 12 10 8 36 36 H 1.09004 * 109.46685 * 300.00630 * 13 12 10 37 37 H 1.09010 * 109.47008 * 59.99759 * 13 12 10 38 38 H 1.08999 * 109.47157 * 300.00137 * 14 13 12 39 39 H 1.09010 * 109.46948 * 59.99984 * 14 13 12 40 40 H 1.08999 * 109.47249 * 300.00298 * 15 14 13 41 41 H 1.09001 * 109.46938 * 59.99926 * 15 14 13 42 42 H 0.96993 * 119.99999 * 179.97438 * 19 18 16 43 43 H 1.09004 * 109.50436 * 299.24262 * 24 8 7 44 44 H 1.08997 * 109.50586 * 179.11799 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6077 1.9818 -0.8428 5 6 1.6356 2.1282 1.3080 6 6 2.1990 3.5510 1.3278 7 7 3.6620 3.5011 1.2124 8 6 4.0740 2.8895 -0.0573 9 1 5.1617 2.8951 -0.1272 10 6 3.4933 3.6750 -1.2049 11 8 2.8638 4.6889 -0.9887 12 7 3.6737 3.2509 -2.4714 13 6 3.1096 4.0149 -3.5870 14 6 3.4573 3.3229 -4.9065 15 6 2.8677 4.1203 -6.0715 16 6 3.2097 3.4383 -7.3711 17 1 3.7898 2.5275 -7.3666 18 6 2.7827 3.9779 -8.5660 19 7 2.0766 5.0874 -8.5715 20 14 3.2059 3.1321 -10.1768 21 1 2.6382 1.7599 -10.1796 22 1 2.6338 3.9062 -11.3076 23 1 4.6817 3.0575 -10.3239 24 6 3.5666 1.4469 -0.1185 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0357 1.5667 2.1521 31 1 0.5485 2.1662 1.3786 32 1 1.9248 4.0372 2.2641 33 1 1.7878 4.1162 0.4913 34 1 4.0647 4.4203 1.3184 35 1 4.1769 2.4399 -2.6443 36 1 2.0263 4.0693 -3.4791 37 1 3.5260 5.0223 -3.5848 38 1 4.5406 3.2689 -5.0140 39 1 3.0413 2.3153 -4.9089 40 1 1.7844 4.1739 -5.9637 41 1 3.2833 5.1280 -6.0692 42 1 1.7766 5.4671 -9.4120 43 1 3.9971 0.8746 0.7032 44 1 3.8592 0.9982 -1.0678 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131342822.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:57 Heat of formation + Delta-G solvation = -71.642945 kcal Electronic energy + Delta-G solvation = -21034.710865 eV Core-core repulsion = 17985.307697 eV Total energy + Delta-G solvation = -3049.403167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.63006 -37.84153 -35.60575 -34.42849 -33.43267 -31.81212 -30.60393 -29.99334 -26.90414 -24.98621 -23.59839 -22.99641 -21.69642 -20.79065 -20.47673 -19.17179 -17.08200 -16.62912 -16.38057 -15.55336 -15.40210 -14.95840 -14.53602 -14.44037 -14.20977 -13.93299 -13.59005 -13.44508 -13.22737 -12.42654 -12.30332 -12.00911 -11.91223 -11.84959 -11.78654 -11.50835 -11.19477 -10.90342 -10.77639 -10.74928 -10.63677 -10.44363 -10.30528 -10.12791 -9.89427 -9.51481 -9.17590 -8.83627 -8.39227 -8.34751 -6.03837 -4.07250 2.69513 3.30447 3.35179 3.36240 3.40931 4.03725 4.42390 4.47919 4.57267 4.65561 4.84566 5.03642 5.12203 5.16735 5.28872 5.31836 5.39732 5.46220 5.51670 5.63145 5.71154 5.73519 5.76104 5.81846 5.86816 5.92563 5.99897 6.07422 6.12211 6.16585 6.31303 6.48209 6.56076 6.77599 6.80884 6.97338 7.17734 7.60393 7.66833 7.72902 7.94445 8.32155 8.36569 8.99161 9.57043 11.07441 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024472 B = 0.003584 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.903746 B = 7811.603988 C = 8375.516914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.094 4.094 4 H 0.069 0.931 5 C -0.110 4.110 6 C 0.033 3.967 7 N -0.660 5.660 8 C 0.067 3.933 9 H 0.107 0.893 10 C 0.480 3.520 11 O -0.547 6.547 12 N -0.722 5.722 13 C 0.115 3.885 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.524 4.524 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.102 4.102 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.347 0.653 35 H 0.398 0.602 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.262 0.738 43 H 0.081 0.919 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.962 -8.809 20.152 22.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.113 4.113 4 H 0.088 0.912 5 C -0.148 4.148 6 C -0.095 4.095 7 N -0.289 5.289 8 C -0.047 4.047 9 H 0.125 0.875 10 C 0.265 3.735 11 O -0.426 6.426 12 N -0.372 5.372 13 C -0.008 4.008 14 C -0.158 4.158 15 C -0.013 4.013 16 C -0.562 4.562 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.140 4.140 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.165 0.835 35 H 0.232 0.768 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.072 0.928 43 H 0.099 0.901 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.460 -8.524 20.549 22.294 hybrid contribution 0.228 0.005 -1.777 1.792 sum 1.688 -8.519 18.771 20.683 Atomic orbital electron populations 1.21815 0.95878 1.01440 1.02049 1.21523 0.96020 0.95920 1.01897 1.21276 0.94979 0.96403 0.98598 0.91216 1.21669 1.00063 0.95708 0.97335 1.22261 0.87630 0.97199 1.02442 1.60721 1.10476 1.27791 1.29917 1.21746 1.00754 0.95102 0.87124 0.87545 1.21949 0.80704 0.85823 0.85015 1.90623 1.41475 1.25990 1.84533 1.46360 1.55658 1.28859 1.06366 1.21636 0.98368 0.95432 0.85340 1.21881 1.00747 0.99758 0.93441 1.19020 0.96245 0.95198 0.90871 1.21163 1.34218 1.09662 0.91156 0.92697 1.25028 0.95106 0.94987 0.99287 1.69953 1.36766 1.19789 1.26778 0.86638 0.78687 0.79535 0.83016 1.20230 1.21245 1.20222 1.21637 0.95927 0.93713 1.02711 0.92904 0.92587 0.92635 0.91912 0.92007 0.91552 0.91607 0.91227 0.91187 0.83531 0.76827 0.91970 0.91915 0.92745 0.92759 0.96345 0.96338 0.92849 0.90068 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.67 37.16 0.36 -1.00 16 2 C -0.12 -1.02 5.41 -26.73 -0.14 -1.16 16 3 C -0.09 -0.95 2.01 -90.49 -0.18 -1.13 16 4 H 0.07 0.88 7.31 -51.93 -0.38 0.50 16 5 C -0.11 -1.10 5.07 -26.65 -0.14 -1.23 16 6 C 0.03 0.38 6.14 -3.83 -0.02 0.36 16 7 N -0.66 -7.12 6.48 -107.99 -0.70 -7.82 16 8 C 0.07 0.70 3.51 -68.88 -0.24 0.46 16 9 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 10 C 0.48 6.75 5.69 -10.99 -0.06 6.68 16 11 O -0.55 -9.70 13.82 5.55 0.08 -9.62 16 12 N -0.72 -10.00 5.42 -60.29 -0.33 -10.32 16 13 C 0.12 2.01 5.67 -4.04 -0.02 1.99 16 14 C -0.12 -2.33 5.27 -26.74 -0.14 -2.47 16 15 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 16 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 20 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C -0.10 -0.93 4.78 -26.65 -0.13 -1.05 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.47 6.62 -51.93 -0.34 0.12 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.63 6.69 -51.93 -0.35 0.28 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.01 5.32 -51.93 -0.28 0.74 16 34 H 0.35 3.70 8.81 -39.29 -0.35 3.36 16 35 H 0.40 4.46 7.64 -40.82 -0.31 4.15 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.57 7.32 -51.93 -0.38 0.19 16 LS Contribution 342.39 15.07 5.16 5.16 Total: -1.00 -31.25 342.39 -9.19 -40.44 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -7.85 Total: 3.29 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -1.27 Total: -11.44 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: -0.29 Total: -44.21 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.25 -9.19 -40.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131342822.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.204 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds