Wall clock time and date at job start Mon Mar 30 2020 05:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52998 * 109.47536 * 2 1 4 4 H 1.09006 * 109.57200 * 54.83929 * 3 2 1 5 5 C 1.53207 * 109.57472 * 294.66164 * 3 2 1 6 6 C 1.53035 * 109.29842 * 182.45590 * 5 3 2 7 7 N 1.46847 * 109.52200 * 59.17845 * 6 5 3 8 8 C 1.46851 * 111.19996 * 298.25477 * 7 6 5 9 9 H 1.09001 * 109.45778 * 181.75881 * 8 7 6 10 10 C 1.50700 * 109.46067 * 301.72862 * 8 7 6 11 11 O 1.21276 * 120.00461 * 356.10241 * 10 8 7 12 12 N 1.34779 * 119.99508 * 176.10016 * 10 8 7 13 13 C 1.46500 * 120.00029 * 179.97438 * 12 10 8 14 14 C 1.52995 * 109.47031 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.46790 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47118 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99901 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99958 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99690 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99974 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47143 * 89.99585 * 20 18 16 22 22 H 1.48503 * 109.46811 * 209.99368 * 20 18 16 23 23 H 1.48505 * 109.47059 * 329.99369 * 20 18 16 24 24 C 1.53038 * 109.51786 * 61.74258 * 8 7 6 25 25 H 1.09004 * 109.47693 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47378 * 300.00022 * 1 2 3 27 27 H 1.08997 * 109.47020 * 60.00138 * 1 2 3 28 28 H 1.08997 * 109.47378 * 239.99978 * 2 1 3 29 29 H 1.09007 * 109.46923 * 120.00073 * 2 1 3 30 30 H 1.09001 * 109.48951 * 62.51269 * 5 3 2 31 31 H 1.08998 * 109.52122 * 302.42681 * 5 3 2 32 32 H 1.09005 * 109.46539 * 299.16361 * 6 5 3 33 33 H 1.08995 * 109.45377 * 179.19145 * 6 5 3 34 34 H 1.00907 * 110.99642 * 174.15894 * 7 6 5 35 35 H 0.97001 * 119.99621 * 0.02562 * 12 10 8 36 36 H 1.08999 * 109.47256 * 300.00641 * 13 12 10 37 37 H 1.09004 * 109.46715 * 60.00062 * 13 12 10 38 38 H 1.08992 * 109.47356 * 300.00404 * 14 13 12 39 39 H 1.09001 * 109.46748 * 60.00733 * 14 13 12 40 40 H 1.08999 * 109.47331 * 300.00675 * 15 14 13 41 41 H 1.09007 * 109.47376 * 60.00244 * 15 14 13 42 42 H 0.96998 * 119.99899 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.50252 * 60.76347 * 24 8 7 44 44 H 1.09006 * 109.49695 * 180.83714 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6041 1.9839 0.8397 5 6 1.6433 2.1272 -1.3119 6 6 2.2088 3.5491 -1.3314 7 7 3.6712 3.4972 -1.2084 8 6 4.0758 2.8873 0.0647 9 1 5.1632 2.8915 0.1399 10 6 3.4904 3.6759 1.2077 11 8 2.8630 4.6899 0.9863 12 7 3.6641 3.2542 2.4760 13 6 3.0956 4.0211 3.5872 14 6 3.4350 3.3306 4.9096 15 6 2.8406 4.1312 6.0701 16 6 3.1755 3.4514 7.3728 17 1 3.7546 2.5398 7.3730 18 6 2.7433 3.9939 8.5645 19 7 3.0359 3.4010 9.7013 20 14 1.7422 5.5710 8.5642 21 1 0.2972 5.2400 8.4771 22 1 2.0030 6.3230 9.8178 23 1 2.1305 6.4036 7.3974 24 6 3.5659 1.4457 0.1258 25 1 -0.3635 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 0.5566 2.1667 -1.3873 31 1 2.0463 1.5636 -2.1533 32 1 1.7942 4.1164 -0.4980 33 1 1.9402 4.0337 -2.2700 34 1 4.0757 4.4156 -1.3141 35 1 4.1662 2.4434 2.6529 36 1 3.5130 5.0280 3.5850 37 1 2.0129 4.0764 3.4740 38 1 3.0173 2.3239 4.9116 39 1 4.5177 3.2750 5.0230 40 1 3.2580 5.1381 6.0683 41 1 1.7579 4.1865 5.9566 42 1 2.7316 3.7824 10.5396 43 1 3.9998 0.8712 -0.6926 44 1 3.8537 0.9980 1.0772 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131343036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:00 Heat of formation + Delta-G solvation = -68.157818 kcal Electronic energy + Delta-G solvation = -21088.560510 eV Core-core repulsion = 18039.308470 eV Total energy + Delta-G solvation = -3049.252041 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.68855 -37.90017 -35.71837 -34.47489 -33.45539 -31.90570 -30.81584 -30.02992 -27.32442 -25.04936 -23.59971 -22.90899 -21.68554 -20.82649 -20.42948 -19.22187 -17.16935 -16.84851 -16.54761 -15.72228 -15.49527 -14.99656 -14.57572 -14.35387 -14.24663 -13.86366 -13.62464 -13.52488 -13.25855 -12.73188 -12.48476 -12.11795 -12.01734 -11.92688 -11.88867 -11.59062 -11.23227 -11.11429 -10.92307 -10.79774 -10.50646 -10.34727 -10.25495 -10.05047 -9.90157 -9.73871 -9.26087 -8.92979 -8.58217 -8.40670 -6.08951 -4.07781 2.62367 3.28763 3.31870 3.36679 3.40580 3.99233 4.41865 4.44544 4.53465 4.61993 4.78576 4.99974 5.09351 5.13097 5.25106 5.25825 5.36410 5.42101 5.47945 5.51798 5.61043 5.64447 5.71971 5.79079 5.83608 5.89547 5.95885 5.97113 6.03759 6.13393 6.25689 6.35846 6.40318 6.65700 6.74555 6.75956 7.13322 7.19065 7.32578 7.57988 7.73703 8.25334 8.47560 8.94736 9.53312 11.04317 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023657 B = 0.003793 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.278749 B = 7380.399122 C = 7831.970036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.094 4.094 4 H 0.069 0.931 5 C -0.110 4.110 6 C 0.034 3.966 7 N -0.659 5.659 8 C 0.067 3.933 9 H 0.108 0.892 10 C 0.481 3.519 11 O -0.548 6.548 12 N -0.721 5.721 13 C 0.113 3.887 14 C -0.113 4.113 15 C -0.011 4.011 16 C -0.523 4.523 17 H 0.072 0.928 18 C 0.067 3.933 19 N -0.903 5.903 20 Si 0.879 3.121 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.265 1.265 24 C -0.102 4.102 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.347 0.653 35 H 0.399 0.601 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.018 0.982 41 H 0.014 0.986 42 H 0.264 0.736 43 H 0.081 0.919 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.190 -4.945 -23.058 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.112 4.112 4 H 0.087 0.913 5 C -0.148 4.148 6 C -0.095 4.095 7 N -0.289 5.289 8 C -0.047 4.047 9 H 0.125 0.875 10 C 0.266 3.734 11 O -0.427 6.427 12 N -0.372 5.372 13 C -0.010 4.010 14 C -0.151 4.151 15 C -0.049 4.049 16 C -0.561 4.561 17 H 0.090 0.910 18 C -0.134 4.134 19 N -0.541 5.541 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.190 1.190 24 C -0.140 4.140 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.165 0.835 35 H 0.234 0.766 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.036 0.964 41 H 0.032 0.968 42 H 0.073 0.927 43 H 0.100 0.900 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.615 -4.779 -23.382 23.873 hybrid contribution -0.495 1.179 1.013 1.632 sum -1.110 -3.599 -22.369 22.684 Atomic orbital electron populations 1.21811 0.95886 1.01477 1.01996 1.21525 0.96012 0.95883 1.01963 1.21287 0.94986 0.96430 0.98513 0.91271 1.21685 1.00067 0.95706 0.97349 1.22260 0.87638 0.97219 1.02394 1.60723 1.10594 1.27921 1.29644 1.21752 1.00800 0.95107 0.87043 0.87470 1.21974 0.80639 0.85813 0.84957 1.90617 1.41634 1.26036 1.84407 1.46319 1.55724 1.28894 1.06299 1.21642 0.98317 0.95429 0.85637 1.21698 1.01232 0.99742 0.92405 1.19501 0.95763 0.95906 0.93707 1.21093 1.34961 1.10973 0.89026 0.91003 1.25022 0.95712 0.97171 0.95506 1.69908 1.46492 1.40067 0.97670 0.86783 0.80816 0.84086 0.77662 1.20232 1.21311 1.18959 1.21642 0.95925 0.93678 1.02792 0.92866 0.92671 0.92613 0.91972 0.91856 0.91622 0.91506 0.91242 0.91218 0.83531 0.76642 0.91921 0.91995 0.92137 0.92100 0.96372 0.96819 0.92671 0.90012 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.68 37.15 0.36 -0.96 16 2 C -0.12 -0.99 5.41 -26.74 -0.14 -1.13 16 3 C -0.09 -0.91 2.01 -90.46 -0.18 -1.09 16 4 H 0.07 0.84 7.32 -51.93 -0.38 0.46 16 5 C -0.11 -1.06 5.08 -26.61 -0.14 -1.20 16 6 C 0.03 0.37 6.14 -3.83 -0.02 0.35 16 7 N -0.66 -6.85 6.48 -107.98 -0.70 -7.55 16 8 C 0.07 0.68 3.51 -68.87 -0.24 0.43 16 9 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 10 C 0.48 6.45 5.69 -10.98 -0.06 6.39 16 11 O -0.55 -9.30 13.82 5.56 0.08 -9.22 16 12 N -0.72 -9.47 5.42 -60.30 -0.33 -9.80 16 13 C 0.11 1.84 5.67 -4.04 -0.02 1.82 16 14 C -0.11 -2.08 5.27 -26.73 -0.14 -2.22 16 15 C -0.01 -0.25 4.04 -27.88 -0.11 -0.37 16 16 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 17 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 18 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 19 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 20 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 24 C -0.10 -0.90 4.77 -26.65 -0.13 -1.02 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.45 6.64 -51.93 -0.34 0.10 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.61 6.71 -51.93 -0.35 0.26 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.97 5.32 -51.93 -0.28 0.69 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.35 3.55 8.81 -39.29 -0.35 3.21 16 35 H 0.40 4.25 7.64 -40.82 -0.31 3.94 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 41 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.56 7.33 -51.93 -0.38 0.18 16 LS Contribution 338.84 15.07 5.11 5.11 Total: -1.00 -31.67 338.84 -8.82 -40.48 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -7.81 Total: 2.96 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -1.26 Total: -12.14 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -0.25 Total: -44.23 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.08 Total: -9.22 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.67 -8.82 -40.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131343036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.675 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds