Wall clock time and date at job start Mon Mar 30 2020 05:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52998 * 109.47536 * 2 1 4 4 H 1.09006 * 109.57200 * 54.83929 * 3 2 1 5 5 C 1.53207 * 109.57472 * 294.66164 * 3 2 1 6 6 C 1.53035 * 109.29842 * 182.45590 * 5 3 2 7 7 N 1.46847 * 109.52200 * 59.17845 * 6 5 3 8 8 C 1.46851 * 111.19996 * 298.25477 * 7 6 5 9 9 H 1.09001 * 109.45778 * 181.75881 * 8 7 6 10 10 C 1.50700 * 109.46067 * 301.72862 * 8 7 6 11 11 O 1.21276 * 120.00461 * 356.10241 * 10 8 7 12 12 N 1.34779 * 119.99508 * 176.10016 * 10 8 7 13 13 C 1.46500 * 120.00029 * 179.97438 * 12 10 8 14 14 C 1.52995 * 109.47031 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.46790 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47118 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99901 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99958 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99690 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99974 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47143 * 89.99585 * 20 18 16 22 22 H 1.48503 * 109.46811 * 209.99368 * 20 18 16 23 23 H 1.48505 * 109.47059 * 329.99369 * 20 18 16 24 24 C 1.53038 * 109.51786 * 61.74258 * 8 7 6 25 25 H 1.09004 * 109.47693 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47378 * 300.00022 * 1 2 3 27 27 H 1.08997 * 109.47020 * 60.00138 * 1 2 3 28 28 H 1.08997 * 109.47378 * 239.99978 * 2 1 3 29 29 H 1.09007 * 109.46923 * 120.00073 * 2 1 3 30 30 H 1.09001 * 109.48951 * 62.51269 * 5 3 2 31 31 H 1.08998 * 109.52122 * 302.42681 * 5 3 2 32 32 H 1.09005 * 109.46539 * 299.16361 * 6 5 3 33 33 H 1.08995 * 109.45377 * 179.19145 * 6 5 3 34 34 H 1.00907 * 110.99642 * 174.15894 * 7 6 5 35 35 H 0.97001 * 119.99621 * 0.02562 * 12 10 8 36 36 H 1.08999 * 109.47256 * 300.00641 * 13 12 10 37 37 H 1.09004 * 109.46715 * 60.00062 * 13 12 10 38 38 H 1.08992 * 109.47356 * 300.00404 * 14 13 12 39 39 H 1.09001 * 109.46748 * 60.00733 * 14 13 12 40 40 H 1.08999 * 109.47331 * 300.00675 * 15 14 13 41 41 H 1.09007 * 109.47376 * 60.00244 * 15 14 13 42 42 H 0.96998 * 119.99899 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.50252 * 60.76347 * 24 8 7 44 44 H 1.09006 * 109.49695 * 180.83714 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6041 1.9839 0.8397 5 6 1.6433 2.1272 -1.3119 6 6 2.2088 3.5491 -1.3314 7 7 3.6712 3.4972 -1.2084 8 6 4.0758 2.8873 0.0647 9 1 5.1632 2.8915 0.1399 10 6 3.4904 3.6759 1.2077 11 8 2.8630 4.6899 0.9863 12 7 3.6641 3.2542 2.4760 13 6 3.0956 4.0211 3.5872 14 6 3.4350 3.3306 4.9096 15 6 2.8406 4.1312 6.0701 16 6 3.1755 3.4514 7.3728 17 1 3.7546 2.5398 7.3730 18 6 2.7433 3.9939 8.5645 19 7 3.0359 3.4010 9.7013 20 14 1.7422 5.5710 8.5642 21 1 0.2972 5.2400 8.4771 22 1 2.0030 6.3230 9.8178 23 1 2.1305 6.4036 7.3974 24 6 3.5659 1.4457 0.1258 25 1 -0.3635 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 0.5566 2.1667 -1.3873 31 1 2.0463 1.5636 -2.1533 32 1 1.7942 4.1164 -0.4980 33 1 1.9402 4.0337 -2.2700 34 1 4.0757 4.4156 -1.3141 35 1 4.1662 2.4434 2.6529 36 1 3.5130 5.0280 3.5850 37 1 2.0129 4.0764 3.4740 38 1 3.0173 2.3239 4.9116 39 1 4.5177 3.2750 5.0230 40 1 3.2580 5.1381 6.0683 41 1 1.7579 4.1865 5.9566 42 1 2.7316 3.7824 10.5396 43 1 3.9998 0.8712 -0.6926 44 1 3.8537 0.9980 1.0772 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131343036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:59 Heat of formation + Delta-G solvation = -90.529744 kcal Electronic energy + Delta-G solvation = -21089.530630 eV Core-core repulsion = 18039.308470 eV Total energy + Delta-G solvation = -3050.222160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.66073 -38.85164 -37.06802 -35.40112 -35.12850 -33.53221 -31.93778 -30.75826 -28.98280 -26.04916 -24.69620 -24.08703 -22.67287 -22.26342 -21.46476 -20.28642 -18.97979 -17.91382 -17.64705 -16.93331 -16.68849 -16.23081 -15.77676 -15.71490 -15.14507 -14.97153 -14.78796 -14.56415 -14.45486 -13.99815 -13.82667 -13.70593 -13.17312 -12.80331 -12.74946 -12.70160 -12.62964 -12.41293 -12.00076 -11.89894 -11.81039 -11.62871 -11.54522 -11.36003 -11.31402 -11.08440 -11.01519 -10.78418 -10.11327 -9.35711 -8.31449 -6.35311 1.34390 1.36125 1.47617 1.57995 2.23558 2.34040 3.04281 3.17296 3.70927 3.74604 3.86431 3.90712 4.09084 4.15560 4.25203 4.37569 4.41706 4.46417 4.54908 4.64068 4.67187 4.74601 4.84164 4.85890 4.93458 4.96805 5.00700 5.08035 5.12087 5.18697 5.21311 5.29753 5.38280 5.43716 5.48362 5.52197 5.55806 5.62881 5.90819 6.25254 6.29729 6.56021 6.72699 7.21854 7.29660 8.84996 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023657 B = 0.003793 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.278749 B = 7380.399122 C = 7831.970036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.112 4.112 3 C -0.093 4.093 4 H 0.039 0.961 5 C -0.106 4.106 6 C 0.034 3.966 7 N -0.653 5.653 8 C 0.072 3.928 9 H 0.133 0.867 10 C 0.480 3.520 11 O -0.586 6.586 12 N -0.714 5.714 13 C 0.127 3.873 14 C -0.099 4.099 15 C -0.012 4.012 16 C -0.531 4.531 17 H 0.039 0.961 18 C 0.007 3.993 19 N -0.949 5.949 20 Si 0.946 3.054 21 H -0.268 1.268 22 H -0.283 1.283 23 H -0.250 1.250 24 C -0.100 4.100 25 H 0.061 0.939 26 H 0.039 0.961 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.347 0.653 35 H 0.413 0.587 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.019 0.981 41 H 0.017 0.983 42 H 0.266 0.734 43 H 0.098 0.902 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.024 -5.136 -25.014 25.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.112 4.112 4 H 0.058 0.942 5 C -0.144 4.144 6 C -0.095 4.095 7 N -0.282 5.282 8 C -0.042 4.042 9 H 0.150 0.850 10 C 0.267 3.733 11 O -0.467 6.467 12 N -0.366 5.366 13 C 0.003 3.997 14 C -0.137 4.137 15 C -0.050 4.050 16 C -0.569 4.569 17 H 0.057 0.943 18 C -0.190 4.190 19 N -0.590 5.590 20 Si 0.769 3.231 21 H -0.193 1.193 22 H -0.209 1.209 23 H -0.174 1.174 24 C -0.138 4.138 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.056 0.944 33 H 0.096 0.904 34 H 0.165 0.835 35 H 0.250 0.750 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.037 0.963 41 H 0.035 0.965 42 H 0.075 0.925 43 H 0.117 0.883 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.383 -4.997 -25.362 25.852 hybrid contribution -0.537 1.179 1.610 2.067 sum -0.920 -3.818 -23.752 24.074 Atomic orbital electron populations 1.21820 0.96190 1.01872 1.01398 1.21500 0.95746 0.95048 1.02676 1.21259 0.95755 0.96829 0.97339 0.94206 1.21657 1.00115 0.94876 0.97718 1.22214 0.87993 0.97803 1.01456 1.60786 1.10051 1.27947 1.29412 1.21924 1.01955 0.95161 0.85138 0.84981 1.22686 0.79790 0.85439 0.85420 1.90614 1.43256 1.27905 1.84899 1.46160 1.55648 1.29142 1.05619 1.21239 0.97733 0.95095 0.85626 1.21469 1.01168 0.99284 0.91789 1.19464 0.96213 0.96107 0.93202 1.21454 1.34007 1.10090 0.91338 0.94306 1.25954 0.97090 1.00907 0.95082 1.70049 1.48267 1.42149 0.98508 0.85725 0.79334 0.79781 0.78234 1.19273 1.20873 1.17365 1.21692 0.95022 0.92820 1.04223 0.91967 0.94229 0.92289 0.90520 0.91779 0.91632 0.90339 0.94429 0.90437 0.83527 0.74980 0.92801 0.93099 0.91745 0.91601 0.96263 0.96482 0.92463 0.88310 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.68 71.98 0.70 -1.76 16 2 C -0.11 -1.67 5.41 30.59 0.17 -1.51 16 3 C -0.09 -1.66 2.01 -10.69 -0.02 -1.68 16 4 H 0.04 0.95 7.32 -2.38 -0.02 0.93 16 5 C -0.11 -1.87 5.08 30.68 0.16 -1.71 16 6 C 0.03 0.72 6.14 86.33 0.53 1.25 16 7 N -0.65 -12.33 6.48 -495.55 -3.21 -15.54 16 8 C 0.07 1.28 3.51 44.19 0.16 1.44 16 9 H 0.13 1.75 8.14 -2.39 -0.02 1.74 16 10 C 0.48 12.29 5.69 87.66 0.50 12.78 16 11 O -0.59 -19.76 13.82 -3.02 -0.04 -19.80 16 12 N -0.71 -17.70 5.42 -463.07 -2.51 -20.21 16 13 C 0.13 4.04 5.67 86.38 0.49 4.53 16 14 C -0.10 -3.56 5.27 30.59 0.16 -3.40 16 15 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 16 C -0.53 -30.11 9.66 25.60 0.25 -29.87 16 17 H 0.04 2.39 7.99 -2.91 -0.02 2.36 16 18 C 0.01 0.39 5.47 84.66 0.46 0.86 16 19 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 20 Si 0.95 44.47 27.47 68.60 1.88 46.36 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.25 -11.06 6.54 99.48 0.65 -10.40 16 24 C -0.10 -1.46 4.77 30.64 0.15 -1.32 16 25 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.88 6.64 -2.39 -0.02 0.86 16 28 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.07 1.14 6.71 -2.39 -0.02 1.13 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.04 1.06 5.32 -2.38 -0.01 1.05 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.35 6.59 8.81 -89.69 -0.79 5.80 16 35 H 0.41 7.90 7.64 -92.71 -0.71 7.19 16 36 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.02 0.87 7.20 -2.39 -0.02 0.86 16 41 H 0.02 0.77 7.57 -2.38 -0.02 0.75 16 42 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 43 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 1.04 7.33 -2.38 -0.02 1.02 16 Total: -1.00 -69.02 338.84 -0.35 -69.37 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -0.58 Total: 19.51 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 3.81 Total: -20.80 kcal Atomic # 7 Polarization: -89.20 SS G_CDS: -5.42 Total: -94.63 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.04 Total: -19.80 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.36 kcal Total: -69.02 -0.35 -69.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131343036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.164 kcal (2) G-P(sol) polarization free energy of solvation -69.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds