Wall clock time and date at job start Mon Mar 30 2020 05:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47212 * 2 1 4 4 H 1.09008 * 109.57393 * 305.15437 * 3 2 1 5 5 C 1.53114 * 109.52671 * 65.31333 * 3 2 1 6 6 C 1.53042 * 109.28158 * 177.55954 * 5 3 2 7 7 N 1.46849 * 109.52449 * 300.82567 * 6 5 3 8 8 C 1.46849 * 111.19904 * 61.73745 * 7 6 5 9 9 H 1.08994 * 109.45035 * 58.26829 * 8 7 6 10 10 C 1.50703 * 109.46205 * 178.24296 * 8 7 6 11 11 O 1.21279 * 119.99926 * 20.05647 * 10 8 7 12 12 N 1.34775 * 119.99773 * 200.05248 * 10 8 7 13 13 C 1.46496 * 119.99642 * 180.02562 * 12 10 8 14 14 C 1.53006 * 109.46995 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47127 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47055 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00290 * 0.02562 * 16 15 14 18 18 C 1.37887 * 120.00079 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99907 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99654 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47022 * 89.99986 * 20 18 16 22 22 H 1.48502 * 109.46769 * 209.99494 * 20 18 16 23 23 H 1.48495 * 109.47280 * 329.99669 * 20 18 16 24 24 C 1.53039 * 109.52179 * 298.26187 * 8 7 6 25 25 H 1.08997 * 109.47035 * 59.99982 * 1 2 3 26 26 H 1.08997 * 109.46975 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46993 * 300.00425 * 1 2 3 28 28 H 1.08996 * 109.47334 * 239.99780 * 2 1 3 29 29 H 1.09008 * 109.47414 * 119.99406 * 2 1 3 30 30 H 1.08997 * 109.50520 * 297.50270 * 5 3 2 31 31 H 1.09004 * 109.50519 * 57.58309 * 5 3 2 32 32 H 1.08999 * 109.45782 * 60.83899 * 6 5 3 33 33 H 1.09002 * 109.46270 * 180.81733 * 6 5 3 34 34 H 1.00907 * 110.99757 * 297.64099 * 7 6 5 35 35 H 0.96998 * 120.00166 * 0.02562 * 12 10 8 36 36 H 1.09001 * 109.47464 * 60.00642 * 13 12 10 37 37 H 1.09001 * 109.47459 * 300.00357 * 13 12 10 38 38 H 1.09001 * 109.47002 * 299.99701 * 14 13 12 39 39 H 1.08993 * 109.46955 * 60.00138 * 14 13 12 40 40 H 1.09001 * 109.47289 * 299.99953 * 15 14 13 41 41 H 1.09004 * 109.47261 * 59.99697 * 15 14 13 42 42 H 0.96999 * 119.99682 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.49886 * 179.12020 * 24 8 7 44 44 H 1.09003 * 109.50176 * 299.19092 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6042 1.9839 -0.8397 5 6 1.6423 2.1259 1.3112 6 6 2.2072 3.5481 1.3313 7 7 3.6697 3.4971 1.2089 8 6 4.0751 2.8876 -0.0641 9 1 3.6515 3.4580 -0.8907 10 6 5.5785 2.8942 -0.1677 11 8 6.2548 3.0096 0.8324 12 7 6.1715 2.7719 -1.3718 13 6 7.6330 2.7777 -1.4724 14 6 8.0439 2.6258 -2.9384 15 6 9.5703 2.6313 -3.0434 16 6 9.9750 2.4811 -4.4872 17 1 9.2191 2.3911 -5.2534 18 6 11.3103 2.4595 -4.8303 19 7 11.6634 2.3289 -6.0904 20 14 12.6176 2.6158 -3.5052 21 1 12.9797 1.2651 -3.0054 22 1 13.8222 3.2727 -4.0734 23 1 12.0903 3.4337 -2.3836 24 6 3.5660 1.4457 -0.1258 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 0.5557 2.1648 1.3863 31 1 2.0453 1.5618 2.1524 32 1 1.7926 4.1153 0.4980 33 1 1.9381 4.0325 2.2700 34 1 4.0812 3.0094 1.9906 35 1 5.6307 2.6799 -2.1717 36 1 8.0405 1.9493 -0.8928 37 1 8.0204 3.7191 -1.0825 38 1 7.6567 1.6846 -3.3286 39 1 7.6366 3.4544 -3.5176 40 1 9.9580 3.5723 -2.6530 41 1 9.9773 1.8025 -2.4642 42 1 12.6028 2.3133 -6.3317 43 1 3.8536 0.9987 -1.0774 44 1 4.0004 0.8711 0.6923 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131343231.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:03 Heat of formation + Delta-G solvation = -73.691445 kcal Electronic energy + Delta-G solvation = -20414.202855 eV Core-core repulsion = 17364.710858 eV Total energy + Delta-G solvation = -3049.491997 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.34394 -38.48828 -35.56469 -34.67127 -33.34153 -31.88855 -31.01463 -29.97321 -27.36765 -25.12820 -23.66874 -22.89048 -21.87612 -20.69716 -20.51666 -19.70553 -17.34849 -16.72751 -16.11058 -15.56380 -15.38155 -15.08454 -14.69740 -14.59423 -14.23514 -14.09358 -13.99851 -13.41264 -13.20584 -12.70258 -12.64070 -12.33378 -12.17307 -11.96581 -11.86860 -11.64077 -11.38352 -11.26430 -11.07818 -10.99659 -10.89047 -10.69391 -10.16821 -9.95339 -9.76867 -9.49777 -9.22931 -8.85122 -8.57985 -8.55734 -6.06643 -4.05317 2.71057 3.20379 3.31316 3.38968 3.43553 4.08107 4.29372 4.34717 4.44393 4.49830 4.72566 4.82256 4.88251 4.95934 5.02877 5.09605 5.15993 5.27540 5.31418 5.43777 5.48577 5.55450 5.57514 5.61762 5.66387 5.70013 5.72538 5.73162 5.91633 6.02098 6.03541 6.35986 6.44920 6.64306 6.74078 6.79848 7.13879 7.22729 7.36253 7.65040 7.76706 8.34992 8.50137 8.97197 9.55708 11.06618 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032421 B = 0.003017 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.431956 B = 9278.745919 C = 9813.222526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.085 4.085 4 H 0.074 0.926 5 C -0.156 4.156 6 C 0.058 3.942 7 N -0.668 5.668 8 C 0.073 3.927 9 H 0.101 0.899 10 C 0.516 3.484 11 O -0.537 6.537 12 N -0.725 5.725 13 C 0.115 3.885 14 C -0.113 4.113 15 C -0.011 4.011 16 C -0.522 4.522 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.903 5.903 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.264 1.264 24 C -0.143 4.143 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.352 0.648 35 H 0.399 0.601 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.019 0.981 41 H 0.014 0.986 42 H 0.263 0.737 43 H 0.075 0.925 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.672 -2.012 13.613 27.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.104 4.104 4 H 0.092 0.908 5 C -0.195 4.195 6 C -0.071 4.071 7 N -0.299 5.299 8 C -0.041 4.041 9 H 0.119 0.881 10 C 0.301 3.699 11 O -0.413 6.413 12 N -0.376 5.376 13 C -0.008 4.008 14 C -0.151 4.151 15 C -0.049 4.049 16 C -0.560 4.560 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.542 5.542 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.182 4.182 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.172 0.828 35 H 0.233 0.767 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.032 0.968 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.936 -1.270 13.995 26.898 hybrid contribution 0.349 -0.996 0.237 1.082 sum -22.586 -2.266 14.232 26.792 Atomic orbital electron populations 1.21805 0.95762 1.01592 1.01865 1.21565 0.95966 0.96004 1.02200 1.21202 0.94521 0.96438 0.98201 0.90763 1.22408 1.01672 0.97794 0.97618 1.22064 0.87087 0.95262 1.02717 1.60379 1.08396 1.57601 1.03490 1.21499 0.92508 0.94888 0.95225 0.88111 1.20395 0.89697 0.76241 0.83581 1.90680 1.65686 1.48890 1.36074 1.46138 1.08740 1.74139 1.08591 1.21644 0.78024 1.01888 0.99251 1.21701 0.99753 1.01592 0.92040 1.19503 0.90627 0.96715 0.98075 1.21100 0.93054 1.50390 0.91458 0.91016 1.25032 0.98709 0.94468 0.95282 1.69913 1.17096 1.50668 1.16545 0.86774 0.81260 0.78760 0.82504 1.20255 1.21361 1.18865 1.22260 0.96033 0.96419 1.03530 0.92708 0.92836 0.92576 0.91759 0.92049 0.91065 0.91860 0.90813 0.90307 0.82796 0.76733 0.91889 0.91758 0.92169 0.92074 0.96292 0.96773 0.92695 0.90614 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.67 37.16 0.36 -0.52 16 2 C -0.12 -0.79 5.41 -26.73 -0.14 -0.93 16 3 C -0.09 -0.59 2.25 -90.50 -0.20 -0.79 16 4 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 5 C -0.16 -1.02 5.06 -26.65 -0.13 -1.15 16 6 C 0.06 0.44 6.55 -3.83 -0.03 0.41 16 7 N -0.67 -6.96 6.28 -107.98 -0.68 -7.64 16 8 C 0.07 0.74 2.82 -68.87 -0.19 0.55 16 9 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 10 C 0.52 7.29 7.08 -10.98 -0.08 7.21 16 11 O -0.54 -9.73 16.19 5.56 0.09 -9.64 16 12 N -0.72 -9.81 5.56 -60.29 -0.33 -10.15 16 13 C 0.11 1.91 5.67 -4.04 -0.02 1.88 16 14 C -0.11 -2.10 5.27 -26.73 -0.14 -2.24 16 15 C -0.01 -0.26 4.04 -27.89 -0.11 -0.38 16 16 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 17 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 18 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 19 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 20 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 23 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 24 C -0.14 -1.22 4.63 -26.65 -0.12 -1.34 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.30 6.64 -51.92 -0.34 -0.04 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.07 0.40 6.71 -51.93 -0.35 0.05 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.35 3.93 8.31 -39.29 -0.33 3.60 16 35 H 0.40 4.30 8.47 -40.82 -0.35 3.96 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 41 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 347.12 15.07 5.23 5.23 Total: -1.00 -32.35 347.12 -8.90 -41.24 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -8.06 Total: 1.36 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -1.25 Total: -10.51 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: -0.24 Total: -44.82 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.35 -8.90 -41.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131343231.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.447 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds