Wall clock time and date at job start Mon Mar 30 2020 04:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47237 * 2 1 4 4 C 1.53004 * 109.47144 * 119.99771 * 2 1 3 5 5 H 1.09009 * 110.62454 * 296.89724 * 4 2 1 6 6 C 1.55140 * 110.70912 * 173.60206 * 4 2 1 7 7 C 1.54902 * 101.65153 * 205.96378 * 6 4 2 8 8 N 1.47846 * 104.80122 * 37.06843 * 7 6 4 9 9 C 1.46889 * 111.00042 * 213.63942 * 8 7 6 10 10 C 1.50706 * 109.47109 * 290.83855 * 9 8 7 11 11 O 1.21281 * 119.99699 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00080 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00036 * 359.72107 * 12 10 9 14 14 C 1.46506 * 119.99969 * 180.02562 * 12 10 9 15 15 C 1.50703 * 109.46877 * 269.72057 * 14 12 10 16 16 H 1.08005 * 119.99817 * 0.02562 * 15 14 12 17 17 C 1.37871 * 120.00081 * 179.97438 * 15 14 12 18 18 N 1.31520 * 119.99848 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00321 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46844 * 60.00490 * 19 17 15 21 21 H 1.48496 * 109.47153 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47045 * 300.00555 * 19 17 15 23 23 C 1.47452 * 108.56229 * 335.90218 * 8 7 6 24 24 H 1.09004 * 109.47600 * 60.00268 * 1 2 3 25 25 H 1.09003 * 109.47437 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47419 * 300.00409 * 1 2 3 27 27 H 1.09002 * 109.47419 * 239.99591 * 2 1 3 28 28 H 1.08998 * 109.47354 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46678 * 299.99558 * 3 2 1 30 30 H 1.08995 * 109.47643 * 59.99463 * 3 2 1 31 31 H 1.09006 * 110.98530 * 324.05547 * 6 4 2 32 32 H 1.08997 * 110.99125 * 87.86836 * 6 4 2 33 33 H 1.09001 * 110.37573 * 278.23366 * 7 6 4 34 34 H 1.09006 * 110.37086 * 155.89403 * 7 6 4 35 35 H 1.09004 * 109.47256 * 170.84222 * 9 8 7 36 36 H 1.08998 * 109.47820 * 50.84032 * 9 8 7 37 37 H 1.09003 * 109.47269 * 270.27384 * 13 12 10 38 38 H 1.08994 * 109.47173 * 30.28203 * 13 12 10 39 39 H 1.09005 * 109.47077 * 150.28374 * 13 12 10 40 40 H 1.09000 * 109.46803 * 29.71536 * 14 12 10 41 41 H 1.09000 * 109.47214 * 149.72329 * 14 12 10 42 42 H 0.96998 * 119.99944 * 179.97438 * 18 17 15 43 43 H 1.08999 * 109.88228 * 120.39493 * 23 8 7 44 44 H 1.08990 * 109.88764 * 241.41981 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.7328 -0.1912 2.1510 6 6 3.5825 -0.8795 1.2001 7 6 3.7971 -2.1302 2.0885 8 7 2.6501 -3.0117 1.7832 9 6 2.2397 -3.7720 2.9712 10 6 3.3031 -4.7841 3.3120 11 8 4.3040 -4.8643 2.6318 12 7 3.1413 -5.6006 4.3719 13 6 1.9345 -5.5002 5.1964 14 6 4.1752 -6.5841 4.7035 15 6 3.8848 -7.8787 3.9889 16 1 3.0170 -7.9605 3.3511 17 6 4.7273 -8.9583 4.1484 18 7 5.7843 -8.8584 4.9246 19 14 4.3670 -10.5632 3.2631 20 1 4.3583 -10.3285 1.7967 21 1 5.4151 -11.5600 3.5991 22 1 3.0407 -11.0770 3.6900 23 6 1.5413 -2.1813 1.2782 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9562 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 3.9239 -1.0612 0.1809 32 1 4.0783 -0.0076 1.6268 33 1 3.7922 -1.8523 3.1425 34 1 4.7341 -2.6233 1.8296 35 1 1.3007 -4.2864 2.7668 36 1 2.1050 -3.0898 3.8106 37 1 2.1021 -4.7831 6.0000 38 1 1.0999 -5.1666 4.5798 39 1 1.7036 -6.4763 5.6230 40 1 5.1490 -6.2070 4.3908 41 1 4.1808 -6.7565 5.7798 42 1 6.3769 -9.6181 5.0371 43 1 1.2680 -2.4998 0.2723 44 1 0.6807 -2.2688 1.9413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134981341.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:52 Heat of formation + Delta-G solvation = -63.222523 kcal Electronic energy + Delta-G solvation = -21091.564110 eV Core-core repulsion = 18042.526080 eV Total energy + Delta-G solvation = -3049.038030 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.02632 -39.73865 -36.66339 -36.12661 -34.72932 -32.30394 -30.16888 -29.52473 -27.86324 -27.56630 -26.91973 -24.50924 -22.78845 -22.00548 -20.58171 -20.02438 -18.69132 -17.92975 -17.38749 -16.74975 -16.46619 -16.20268 -15.89358 -15.33750 -14.77495 -14.62469 -14.25658 -14.13680 -13.96766 -13.71538 -13.65534 -13.43828 -13.24754 -13.11868 -12.93131 -12.85434 -12.72227 -12.55411 -12.34806 -12.19842 -12.16916 -11.81654 -11.71470 -11.43291 -11.35898 -11.26083 -10.64767 -10.50782 -9.40924 -9.18733 -8.22639 -6.37866 1.35728 1.40765 1.47962 1.88213 2.27381 2.42080 3.06363 3.10756 3.60317 3.66404 3.86595 3.88200 4.19730 4.25885 4.29022 4.32612 4.44545 4.52265 4.54910 4.56548 4.71128 4.74533 4.85752 4.88668 4.94584 4.98385 5.01404 5.03879 5.10035 5.10845 5.18399 5.22078 5.31458 5.37561 5.50828 5.56073 5.59896 5.83762 5.99114 6.06424 6.12452 6.70405 6.82818 7.28736 7.55053 8.84205 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034740 B = 0.003600 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.784051 B = 7775.866915 C = 7793.079660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.145 4.145 4 C -0.094 4.094 5 H 0.085 0.915 6 C -0.115 4.115 7 C 0.048 3.952 8 N -0.541 5.541 9 C 0.050 3.950 10 C 0.492 3.508 11 O -0.581 6.581 12 N -0.615 5.615 13 C 0.079 3.921 14 C 0.262 3.738 15 C -0.544 4.544 16 H 0.052 0.948 17 C 0.006 3.994 18 N -0.930 5.930 19 Si 0.969 3.031 20 H -0.279 1.279 21 H -0.277 1.277 22 H -0.258 1.258 23 C 0.049 3.951 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.041 0.959 34 H 0.049 0.951 35 H 0.119 0.881 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.066 0.934 40 H -0.006 1.006 41 H 0.023 0.977 42 H 0.267 0.733 43 H 0.076 0.924 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.999 19.734 -5.109 24.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 C -0.202 4.202 4 C -0.113 4.113 5 H 0.104 0.896 6 C -0.153 4.153 7 C -0.079 4.079 8 N -0.266 5.266 9 C -0.081 4.081 10 C 0.281 3.719 11 O -0.461 6.461 12 N -0.348 5.348 13 C -0.063 4.063 14 C 0.140 3.860 15 C -0.582 4.582 16 H 0.070 0.930 17 C -0.193 4.193 18 N -0.570 5.570 19 Si 0.793 3.207 20 H -0.204 1.204 21 H -0.202 1.202 22 H -0.183 1.183 23 C -0.078 4.078 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.137 0.863 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.013 0.987 41 H 0.041 0.959 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.207 19.214 -5.734 24.010 hybrid contribution 0.347 -0.766 0.447 0.953 sum -12.860 18.448 -5.287 23.101 Atomic orbital electron populations 1.21857 0.94339 1.02033 1.02180 1.21059 0.96341 0.96298 0.96452 1.21825 1.01021 0.95274 1.02118 1.22415 0.94341 0.94995 0.99541 0.89641 1.22747 0.96478 0.96269 0.99831 1.22949 0.94311 0.92676 0.98012 1.63145 1.07096 1.26315 1.30011 1.22179 0.96684 0.95432 0.93803 1.21304 0.88375 0.82420 0.79841 1.90623 1.32841 1.71648 1.50986 1.48208 1.22004 1.35588 1.28991 1.21920 0.86048 1.02923 0.95408 1.18701 0.86346 0.86125 0.94820 1.21693 1.10459 0.97452 1.28626 0.92950 1.25889 0.94488 1.02873 0.96022 1.70050 1.14973 1.32737 1.39203 0.85451 0.78618 0.78149 0.78495 1.20444 1.20216 1.18279 1.22994 0.92471 0.91285 1.01072 0.92205 0.92574 0.92201 0.91788 0.92857 0.92184 0.92277 0.91274 0.89479 0.94097 0.93208 0.86286 0.89695 0.91242 0.88858 0.91540 0.98749 0.95922 0.92377 0.90595 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.96 71.98 0.64 -1.11 16 2 C -0.08 -1.17 2.30 -10.80 -0.02 -1.20 16 3 C -0.15 -1.78 9.04 71.98 0.65 -1.13 16 4 C -0.09 -1.60 2.49 -9.61 -0.02 -1.63 16 5 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 6 C -0.12 -2.45 5.68 31.98 0.18 -2.27 16 7 C 0.05 1.44 5.74 86.77 0.50 1.94 16 8 N -0.54 -16.35 4.86 -890.11 -4.33 -20.68 16 9 C 0.05 1.48 3.61 85.56 0.31 1.79 16 10 C 0.49 21.48 7.47 87.66 0.65 22.14 16 11 O -0.58 -31.82 14.61 -3.03 -0.04 -31.87 16 12 N -0.62 -27.03 2.86 -851.11 -2.43 -29.46 16 13 C 0.08 2.38 10.24 127.77 1.31 3.69 16 14 C 0.26 14.65 5.17 85.63 0.44 15.09 16 15 C -0.54 -32.41 9.39 25.60 0.24 -32.17 16 16 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 17 C 0.01 0.36 5.46 84.65 0.46 0.82 16 18 N -0.93 -57.69 13.29 21.45 0.28 -57.41 16 19 Si 0.97 46.04 29.54 68.60 2.03 48.07 16 20 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 23 C 0.05 1.01 5.45 86.64 0.47 1.49 16 24 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 25 H 0.06 0.70 7.05 -2.39 -0.02 0.68 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 28 H 0.05 0.69 7.48 -2.39 -0.02 0.67 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 1.56 8.02 -2.38 -0.02 1.54 16 32 H 0.09 1.55 8.12 -2.39 -0.02 1.53 16 33 H 0.04 1.17 7.62 -2.39 -0.02 1.16 16 34 H 0.05 1.89 7.38 -2.38 -0.02 1.87 16 35 H 0.12 2.96 7.30 -2.39 -0.02 2.94 16 36 H 0.09 2.02 7.81 -2.39 -0.02 2.00 16 37 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.09 2.09 6.45 -2.39 -0.02 2.07 16 39 H 0.07 2.11 8.07 -2.38 -0.02 2.09 16 40 H -0.01 -0.36 7.41 -2.39 -0.02 -0.38 16 41 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16 42 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 43 H 0.08 1.62 7.47 -2.39 -0.02 1.61 16 44 H 0.07 1.23 7.54 -2.39 -0.02 1.21 16 Total: -1.00 -76.82 346.35 2.26 -74.56 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 0.94 Total: 9.34 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 5.82 Total: 7.44 kcal Atomic # 7 Polarization: -101.07 SS G_CDS: -6.48 Total: -107.54 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.04 Total: -31.87 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -76.82 2.26 -74.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134981341.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.341 kcal (2) G-P(sol) polarization free energy of solvation -76.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds