Wall clock time and date at job start Mon Mar 30 2020 04:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 120.00000 * 2 1 4 4 C 1.50700 * 109.46949 * 270.00051 * 3 2 1 5 5 H 1.07997 * 119.99999 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99433 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00569 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99518 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47524 * 89.99901 * 8 6 4 10 10 H 1.48506 * 109.47167 * 210.00008 * 8 6 4 11 11 H 1.48503 * 109.47463 * 329.99640 * 8 6 4 12 12 C 1.34776 * 119.99780 * 179.97438 * 2 1 3 13 13 O 1.21275 * 119.99908 * 185.69737 * 12 2 1 14 14 C 1.50693 * 119.99800 * 5.70619 * 12 2 1 15 15 C 1.53000 * 109.47585 * 67.11392 * 14 12 2 16 16 C 1.53007 * 109.47355 * 307.10870 * 14 12 2 17 17 C 1.53007 * 109.46922 * 187.11078 * 14 12 2 18 18 H 1.08997 * 109.50368 * 300.07977 * 17 14 12 19 19 C 1.53115 * 109.50398 * 179.97438 * 17 14 12 20 20 C 1.53117 * 109.16310 * 182.40444 * 19 17 14 21 21 C 1.53045 * 109.27685 * 57.65599 * 20 19 17 22 22 N 1.46847 * 109.51993 * 300.82279 * 21 20 19 23 23 C 1.46848 * 111.19893 * 61.74421 * 22 21 20 24 24 H 1.09008 * 109.47117 * 265.48617 * 1 2 3 25 25 H 1.09003 * 109.46751 * 25.47953 * 1 2 3 26 26 H 1.08996 * 109.47465 * 145.48453 * 1 2 3 27 27 H 1.08999 * 109.46871 * 30.00386 * 3 2 1 28 28 H 1.08996 * 109.46693 * 150.00101 * 3 2 1 29 29 H 0.97008 * 120.00619 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.47401 * 175.14109 * 15 14 12 31 31 H 1.09000 * 109.46714 * 295.13411 * 15 14 12 32 32 H 1.08997 * 109.47259 * 55.13597 * 15 14 12 33 33 H 1.08993 * 109.46947 * 300.00418 * 16 14 12 34 34 H 1.09000 * 109.46901 * 60.00138 * 16 14 12 35 35 H 1.08992 * 109.47087 * 180.02562 * 16 14 12 36 36 H 1.09004 * 109.52310 * 62.49944 * 19 17 14 37 37 H 1.09004 * 109.52700 * 302.30796 * 19 17 14 38 38 H 1.08997 * 109.50382 * 297.71574 * 20 19 17 39 39 H 1.08999 * 109.54113 * 177.61783 * 20 19 17 40 40 H 1.08995 * 109.46043 * 180.80463 * 21 20 19 41 41 H 1.08998 * 109.45046 * 60.83008 * 21 20 19 42 42 H 1.00904 * 110.99652 * 185.84218 * 22 21 20 43 43 H 1.08996 * 109.46436 * 58.26805 * 23 22 21 44 44 H 1.09004 * 109.45896 * 178.23897 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.5542 3.6175 -0.6731 8 14 3.4376 3.4170 -3.4339 9 1 2.3078 4.2607 -3.8998 10 1 4.6983 4.1993 -3.4968 11 1 3.5538 2.2201 -4.3052 12 6 2.1389 -1.1672 0.0005 13 8 3.3471 -1.1698 0.1048 14 6 1.3909 -2.4690 -0.1287 15 6 0.7675 -2.5630 -1.5227 16 6 0.2868 -2.5301 0.9289 17 6 2.3590 -3.6360 0.0768 18 1 3.1465 -3.5922 -0.6754 19 6 1.5996 -4.9592 -0.0537 20 6 2.5625 -6.1196 0.2125 21 6 3.1774 -5.9567 1.6046 22 7 3.8929 -4.6765 1.6782 23 6 2.9796 -3.5451 1.4727 24 1 -0.3634 -0.0809 1.0245 25 1 -0.3633 0.9278 -0.4421 26 1 -0.3634 -0.8467 -0.5823 27 1 1.6085 2.0283 0.5139 28 1 3.1499 1.1383 0.5138 29 1 4.0311 4.4435 -0.8503 30 1 0.3001 -3.5399 -1.6467 31 1 0.0149 -1.7830 -1.6375 32 1 1.5434 -2.4331 -2.2772 33 1 0.7309 -2.4632 1.9220 34 1 -0.4028 -1.6988 0.7825 35 1 -0.2538 -3.4719 0.8357 36 1 1.1923 -5.0476 -1.0608 37 1 0.7872 -4.9861 0.6726 38 1 3.3535 -6.1154 -0.5374 39 1 2.0190 -7.0630 0.1629 40 1 3.8742 -6.7737 1.7915 41 1 2.3869 -5.9747 2.3548 42 1 4.3868 -4.5882 2.5537 43 1 2.1902 -3.5745 2.2238 44 1 3.5330 -2.6105 1.5640 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135055413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:25 Heat of formation + Delta-G solvation = -26.169717 kcal Electronic energy + Delta-G solvation = -22279.541747 eV Core-core repulsion = 19232.110447 eV Total energy + Delta-G solvation = -3047.431300 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.40490 -37.98595 -35.20755 -34.72495 -32.54180 -31.60185 -29.58777 -27.82793 -27.05387 -26.14182 -24.24804 -23.11855 -22.93581 -20.99844 -19.12364 -18.14621 -16.53234 -16.32946 -15.70184 -15.47819 -14.87480 -14.54244 -14.33198 -14.24218 -13.99151 -13.51982 -13.23140 -13.08119 -12.88370 -12.50364 -12.30638 -12.08128 -11.88035 -11.59475 -11.37066 -11.36235 -11.13622 -10.88606 -10.73429 -10.66050 -10.45051 -10.31906 -10.19324 -10.15164 -9.89231 -9.57641 -8.59504 -8.41736 -8.29414 -7.55565 -6.02287 -4.07152 3.30945 3.37691 3.41203 3.50913 4.00173 4.28612 4.46124 4.80242 4.85314 4.94965 5.06008 5.15738 5.23491 5.31699 5.42237 5.50213 5.50286 5.54494 5.64824 5.72259 5.77321 5.83715 5.89547 5.94603 6.00711 6.02532 6.03934 6.10336 6.17923 6.20656 6.34454 6.45541 6.60608 6.68256 7.11126 7.18517 7.48162 7.49410 7.60063 7.94741 8.26237 8.49394 8.93133 9.17017 9.58236 11.05636 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027581 B = 0.005029 C = 0.004869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.951339 B = 5566.433435 C = 5749.315998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.600 5.600 3 C 0.244 3.756 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.516 3.484 13 O -0.537 6.537 14 C -0.077 4.077 15 C -0.146 4.146 16 C -0.172 4.172 17 C -0.054 4.054 18 H 0.084 0.916 19 C -0.119 4.119 20 C -0.117 4.117 21 C 0.057 3.943 22 N -0.688 5.688 23 C 0.055 3.945 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.030 0.970 28 H 0.044 0.956 29 H 0.263 0.737 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.024 0.976 42 H 0.340 0.660 43 H 0.023 0.977 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.282 -16.632 3.704 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.331 5.331 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.302 3.698 13 O -0.415 6.415 14 C -0.081 4.081 15 C -0.203 4.203 16 C -0.228 4.228 17 C -0.074 4.074 18 H 0.102 0.898 19 C -0.157 4.157 20 C -0.155 4.155 21 C -0.072 4.072 22 N -0.319 5.319 23 C -0.073 4.073 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.042 0.958 42 H 0.157 0.843 43 H 0.041 0.959 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.337 -16.445 3.156 18.282 hybrid contribution -0.348 0.476 -0.116 0.601 sum -7.685 -15.970 3.040 17.982 Atomic orbital electron populations 1.22211 0.82173 1.03023 1.00141 1.48058 1.05845 1.07770 1.71473 1.19283 0.92635 0.78186 0.97393 1.21441 1.36413 1.06257 0.92324 0.92508 1.24931 0.95370 0.96428 0.97356 1.69932 1.38435 1.14315 1.30710 0.86515 0.77668 0.78595 0.84748 1.20669 1.21087 1.19898 1.20199 0.87759 0.84784 0.77029 1.90622 1.14196 1.86922 1.49711 1.20740 0.96244 0.94009 0.97149 1.22026 1.01234 1.02080 0.94951 1.22584 0.98531 1.03376 0.98337 1.20864 0.96444 0.91801 0.98256 0.89774 1.21784 0.97845 0.94461 1.01600 1.21573 0.98932 0.97707 0.97265 1.21909 0.96397 0.92290 0.96629 1.60207 1.29820 1.01707 1.40140 1.22260 0.94610 0.94936 0.95504 0.93544 0.91129 0.90787 0.95221 0.93782 0.92748 0.91785 0.91208 0.91988 0.92425 0.89696 0.92085 0.91609 0.92098 0.91205 0.92033 0.91365 0.95812 0.84274 0.95891 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 8.51 59.85 0.51 1.59 16 2 N -0.60 -12.74 2.86 -182.95 -0.52 -13.26 16 3 C 0.24 6.45 5.18 -5.19 -0.03 6.43 16 4 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 8 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.52 10.71 6.07 -10.99 -0.07 10.65 16 13 O -0.54 -13.42 13.52 5.56 0.08 -13.35 16 14 C -0.08 -1.18 0.30 -155.66 -0.05 -1.23 16 15 C -0.15 -1.99 8.06 37.16 0.30 -1.69 16 16 C -0.17 -2.13 7.27 37.16 0.27 -1.86 16 17 C -0.05 -0.81 1.33 -90.54 -0.12 -0.93 16 18 H 0.08 1.49 8.02 -51.93 -0.42 1.08 16 19 C -0.12 -1.38 4.57 -26.61 -0.12 -1.50 16 20 C -0.12 -1.26 6.09 -26.65 -0.16 -1.42 16 21 C 0.06 0.63 6.55 -3.83 -0.03 0.61 16 22 N -0.69 -9.28 6.85 -113.81 -0.78 -10.06 16 23 C 0.06 0.85 5.17 -3.83 -0.02 0.83 16 24 H 0.05 0.64 7.03 -51.92 -0.36 0.27 16 25 H 0.07 1.16 8.04 -51.93 -0.42 0.74 16 26 H 0.07 0.99 3.19 -51.93 -0.17 0.82 16 27 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 28 H 0.04 1.32 7.35 -51.93 -0.38 0.93 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.06 0.70 6.24 -51.93 -0.32 0.37 16 31 H 0.07 0.91 5.26 -51.93 -0.27 0.64 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.75 6.41 -51.93 -0.33 0.42 16 34 H 0.08 0.99 3.51 -51.93 -0.18 0.81 16 35 H 0.06 0.63 6.38 -51.93 -0.33 0.30 16 36 H 0.07 0.70 6.47 -51.93 -0.34 0.37 16 37 H 0.06 0.65 6.32 -51.93 -0.33 0.32 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.34 4.04 8.90 -39.29 -0.35 3.69 16 43 H 0.02 0.33 6.38 -51.93 -0.33 0.00 16 44 H 0.10 1.86 5.82 -51.93 -0.30 1.56 16 LS Contribution 321.53 15.07 4.85 4.85 Total: -1.00 -32.59 321.53 -7.51 -40.10 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.91 Total: 3.00 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 0.07 Total: -2.18 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -0.57 Total: -49.42 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.08 Total: -13.35 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.59 -7.51 -40.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135055413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.931 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds